genome.fa.s8.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  138  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41627431--41627614	98	1.9	97	89	4	291	31	26	7	34	1.84
41627585--41627919	47	7.1	47	89	0	481	26	29	11	33	1.90
41627841--41627920	25	3.3	24	66	16	58	31	27	6	35	1.82
41629901--41630028	54	2.3	55	94	1	222	16	20	9	53	1.70
41631800--41632226	40	10.8	40	90	4	643	25	28	21	24	1.99
41631800--41632226	159	2.7	158	90	5	668	25	28	21	24	1.99
41633491--41633561	37	1.9	37	91	5	117	26	30	18	23	1.97
41633706--41633888	97	1.9	96	93	3	314	30	26	7	36	1.83
41633706--41633889	48	3.8	48	90	4	307	30	26	7	35	1.83
41633859--41634193	47	7.1	47	90	0	508	26	29	11	32	1.91
41634093--41634164	22	3.1	22	64	24	58	23	29	13	33	1.93
41636169--41636292	53	2.4	53	97	1	232	16	20	9	54	1.70
41643512--41643735	123	1.8	123	85	1	315	30	10	24	34	1.89
41643730--41643859	40	3.2	40	83	4	165	22	25	29	23	1.99
41653771--41653817	18	2.6	18	90	6	69	25	10	0	63	1.26
41655072--41655304	118	2.0	118	98	0	448	38	15	12	33	1.85
41655539--41655624	35	2.4	36	82	9	113	16	12	27	43	1.84
41661572--41661668	38	2.6	38	88	0	131	21	22	27	27	1.99
41661679--41661907	43	5.3	43	89	0	332	13	23	32	30	1.93
41663411--41663524	43	2.7	42	82	5	131	29	24	15	29	1.96
41667113--41667142	5	6.0	5	92	0	51	76	0	3	20	0.92
41670745--41671024	132	2.1	130	83	7	350	33	15	18	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41672150--41672360	64	3.2	64	62	20	151	29	26	18	26	1.98
41672116--41672402	137	2.1	137	98	0	556	31	25	19	24	1.98
41672650--41672698	25	1.9	26	83	4	64	24	14	22	38	1.91
41674181--41674288	26	4.2	26	95	1	175	37	24	5	33	1.79
41674181--41674288	51	2.1	51	91	3	173	37	24	5	33	1.79
41678448--41678499	25	2.0	26	85	3	70	25	13	23	38	1.91
41679976--41680085	26	4.2	26	91	0	175	35	24	6	33	1.81
41680433--41680503	24	3.0	24	95	0	124	35	1	38	25	1.65
41681922--41682033	27	4.1	27	83	7	129	15	23	23	38	1.92
41681922--41682033	54	2.1	54	86	3	154	15	23	23	38	1.92
41686107--41686314	40	5.2	40	85	0	209	25	22	25	25	2.00
41689034--41689062	7	4.1	7	100	0	58	13	0	27	58	1.36
41689935--41690066	29	4.6	29	86	0	156	30	15	30	24	1.95
41696607--41696814	40	5.2	40	84	0	218	25	22	25	25	2.00
41696608--41696814	80	2.6	80	83	4	247	25	22	26	25	2.00
41700284--41700481	71	2.8	70	92	3	294	33	17	28	20	1.95
41700350--41700467	41	3.1	41	60	28	98	32	17	28	21	1.96
41700318--41700481	71	2.3	71	100	0	328	35	17	28	18	1.94
41707844--41708041	71	2.8	70	92	3	294	33	17	28	20	1.95
41707910--41708027	41	3.1	41	60	28	98	32	17	28	21	1.96
41707878--41708041	71	2.3	71	100	0	328	35	17	28	18	1.94
41709443--41709530	44	2.0	44	82	12	110	27	27	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41709549--41709692	47	3.2	46	66	18	122	29	27	17	25	1.97
41709524--41709777	88	2.9	88	95	0	447	30	27	17	25	1.97
41709596--41709733	41	3.2	41	64	18	100	32	26	16	24	1.96
41709763--41710095	44	7.6	44	84	1	380	24	28	15	31	1.96
41711340--41711413	5	15.0	5	77	17	75	0	22	0	77	0.78
41711340--41711413	13	5.8	13	75	21	68	0	22	0	77	0.78
41711341--41711416	34	2.3	33	86	8	109	0	21	0	78	0.74
41711343--41711409	21	3.3	21	74	21	72	0	23	0	76	0.79
41713938--41714004	19	3.5	19	87	0	98	46	11	17	23	1.82
41715862--41716186	132	2.5	132	79	6	322	31	16	18	32	1.94
41715900--41716187	132	2.2	131	83	5	357	32	16	18	32	1.93
41716721--41716749	2	14.5	2	100	0	58	51	0	0	48	1.00
41719563--41719619	24	2.3	25	79	11	64	31	15	26	26	1.96
41730031--41730131	28	3.5	30	82	6	118	29	14	26	28	1.95
41730060--41730135	29	2.7	28	76	13	75	30	14	26	28	1.95
41737902--41738002	28	3.5	30	82	6	118	29	14	26	28	1.95
41737931--41738006	29	2.7	28	76	13	75	30	14	26	28	1.95
41745784--41745884	28	3.5	30	82	6	118	29	14	26	28	1.95
41745813--41745888	29	2.7	28	76	13	75	30	14	26	28	1.95
41747976--41748032	28	2.0	28	100	0	114	33	21	17	28	1.96
41749611--41749830	80	2.7	81	80	3	221	23	25	22	28	2.00
41749651--41749830	40	4.4	40	82	3	191	23	26	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41749651--41749830	81	2.2	80	81	3	200	23	26	22	27	2.00
41753875--41753963	34	2.6	34	94	0	151	32	7	16	42	1.77
41753975--41754049	19	3.9	19	85	11	109	22	0	21	56	1.43
41753975--41754049	9	7.9	9	85	11	105	22	0	21	56	1.43
41755342--41755392	27	1.9	26	84	4	66	35	17	27	19	1.94
41755990--41756043	27	2.0	27	85	3	74	35	20	22	22	1.96
41756044--41756216	27	6.4	27	82	2	186	25	20	17	36	1.94
41756048--41756216	54	3.1	54	87	0	214	25	20	17	36	1.94
41762856--41762887	2	16.0	2	100	0	64	50	0	0	50	1.00
41763623--41763822	27	7.4	27	89	0	274	25	20	18	36	1.95
41766001--41766085	43	2.0	43	83	4	109	25	12	23	37	1.91
41771205--41771293	34	2.6	34	96	0	160	32	7	17	41	1.79
41771305--41771366	9	6.4	9	80	12	70	22	0	19	58	1.40
41771308--41771366	19	3.0	19	76	16	66	22	0	18	59	1.38
41771306--41771366	30	2.0	30	90	6	97	21	0	19	59	1.39
41775050--41775131	40	2.0	40	97	0	155	29	26	10	32	1.91
41782170--41782202	16	1.9	18	88	11	52	42	24	15	18	1.88
41788732--41788851	35	3.4	35	77	4	134	29	10	17	42	1.83
41793506--41793630	6	20.3	6	72	14	94	49	15	16	19	1.79
41793514--41793653	25	5.6	25	72	10	99	51	14	15	19	1.76
41793536--41793618	31	2.7	32	92	3	116	50	15	14	19	1.78
41793562--41793653	43	2.1	44	95	2	168	53	14	14	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41793790--41793863	27	2.8	27	89	2	105	36	21	24	17	1.95
41794022--41794083	22	2.8	23	82	7	74	35	20	20	22	1.96
41796130--41796349	40	5.6	40	80	8	238	25	23	26	24	2.00
41804163--41804382	40	5.6	40	80	8	238	25	23	26	24	2.00
41812169--41812388	40	5.6	40	80	8	238	25	23	26	24	2.00
41813858--41814408	27	20.5	27	87	1	732	23	21	21	33	1.97
41816389--41816479	6	14.8	6	70	17	53	48	14	16	20	1.81
41816398--41816466	25	2.8	24	80	12	70	49	13	17	20	1.79
41816391--41816489	31	3.2	31	86	0	126	48	14	17	20	1.81
41816646--41816739	27	3.5	26	85	4	107	39	21	23	15	1.92
41816898--41816962	22	3.0	21	73	13	60	35	23	21	20	1.96
41817389--41817771	27	14.3	27	86	1	441	25	19	20	33	1.97
41819028--41819105	41	1.9	41	84	5	104	16	20	32	30	1.95
41819291--41819411	35	3.5	35	76	4	136	29	10	16	42	1.82
41823276--41823307	13	2.3	15	89	10	50	43	0	0	56	0.99
41823854--41823898	24	1.9	23	86	4	63	37	0	17	44	1.49
41827942--41828013	27	2.7	27	93	0	117	36	11	20	31	1.88
41827969--41828122	54	2.8	53	80	3	182	36	12	22	28	1.91
41827963--41828122	27	5.9	27	71	9	112	35	12	22	29	1.91
41834793--41834833	19	2.2	19	100	0	82	48	0	17	34	1.47
41837147--41837495	47	7.4	47	91	0	520	28	30	8	31	1.87
41837316--41837391	22	3.3	22	64	10	62	28	31	10	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41842323--41842485	30	5.5	30	91	2	249	25	24	14	35	1.93
41846558--41846757	39	5.1	39	93	0	301	24	20	32	24	1.98
41853669--41853798	47	2.8	47	88	2	190	22	14	27	35	1.93
41855824--41855873	22	2.3	22	89	0	73	12	0	44	44	1.41
41858673--41858801	46	2.8	46	80	7	136	38	21	18	20	1.93
41859824--41859873	24	2.1	24	100	0	100	24	8	26	42	1.82
41859925--41859991	32	2.1	32	97	0	125	32	13	13	40	1.83
41860087--41860145	29	2.0	29	100	0	118	40	11	3	44	1.58
41860170--41860206	17	2.2	17	100	0	74	35	27	10	27	1.90
41860571--41860596	9	2.9	9	100	0	52	88	0	0	11	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425