genome.fa.s8.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  209  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63930891--63931070	81	2.2	80	80	9	204	40	20	7	31	1.81
63930891--63931070	54	3.3	54	82	5	213	40	20	7	31	1.81
63931034--63931127	27	3.4	27	80	13	111	41	17	8	32	1.79
63931185--63931248	26	2.4	26	79	7	67	35	18	25	20	1.95
63932057--63932118	25	2.5	25	91	0	97	27	24	24	24	2.00
63932273--63932364	42	2.2	42	92	0	148	29	14	21	34	1.93
63932388--63932502	31	3.7	31	92	1	196	27	16	27	27	1.97
63936749--63936966	40	5.5	40	93	1	341	24	27	23	23	2.00
63941779--63941826	25	1.9	25	86	0	69	33	25	16	25	1.96
63941863--63941951	20	4.6	20	90	5	146	34	11	21	32	1.89
63941874--63941946	11	7.4	11	68	22	63	35	12	20	31	1.90
63941857--63941951	38	2.5	37	88	6	111	35	10	21	32	1.87
63941998--63942097	23	4.3	23	94	5	182	28	20	24	28	1.99
63941998--63942097	48	2.1	46	96	3	182	28	20	24	28	1.99
63941998--63942115	48	2.5	47	90	5	157	27	20	24	27	1.99
63942307--63942369	31	2.1	31	90	3	101	36	15	23	23	1.94
63945086--63945186	27	3.7	28	80	11	102	39	20	9	29	1.85
63945182--63945389	27	7.8	26	90	2	251	29	22	7	39	1.82
63945182--63945389	81	2.6	79	87	5	278	29	22	7	39	1.82
63945260--63945589	27	12.2	27	79	10	131	36	20	8	34	1.82
63945128--63945400	81	3.4	81	79	8	229	31	22	8	37	1.83
63945314--63945578	54	4.9	52	75	13	155	38	19	7	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63945260--63945516	81	3.2	80	76	7	189	35	21	8	35	1.83
63945382--63945617	27	8.8	26	77	6	177	39	19	8	32	1.82
63945382--63945536	80	1.9	81	85	8	219	41	19	8	30	1.81
63945341--63945595	27	9.4	27	76	9	144	38	19	8	34	1.81
63945635--63945712	27	2.9	27	77	11	88	37	21	19	21	1.95
63946864--63946911	25	1.9	25	86	0	69	33	25	16	25	1.96
63946955--63947013	20	3.0	20	97	0	109	37	10	20	32	1.86
63946959--63947013	11	5.4	11	70	16	55	38	10	20	30	1.87
63947064--63947182	24	5.0	24	88	5	170	28	21	22	26	1.99
63947064--63947182	47	2.5	48	89	5	170	28	21	22	26	1.99
63947373--63947467	31	3.1	31	96	0	172	40	15	21	23	1.91
63960270--63960317	24	2.0	24	100	0	96	41	4	29	25	1.74
63962932--63962971	21	1.9	21	100	0	80	25	10	25	40	1.86
63965967--63966153	71	2.7	68	93	5	281	18	28	18	34	1.95
63965990--63966153	71	2.3	71	100	0	328	18	28	17	35	1.94
63965990--63966187	71	2.8	70	92	3	276	20	28	17	33	1.95
63973536--63973722	71	2.7	68	93	5	281	18	28	18	34	1.95
63973559--63973722	71	2.3	71	100	0	328	18	28	17	35	1.94
63973559--63973756	71	2.8	70	92	3	276	20	28	17	33	1.95
63976350--63976393	19	2.4	19	85	7	56	50	0	9	40	1.34
63980517--63980621	40	2.7	40	82	10	119	20	29	25	23	1.99
63982815--63982945	30	4.5	30	86	8	171	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63982815--63982945	58	2.2	58	86	4	174	32	13	25	28	1.94
63989163--63989349	71	2.7	68	93	5	281	18	28	18	34	1.95
63989186--63989349	71	2.3	71	100	0	328	18	28	17	35	1.94
63989186--63989383	71	2.8	70	92	3	276	20	28	17	33	1.95
63990665--63990774	21	5.2	22	80	7	93	45	35	0	18	1.56
63990643--63990823	7	25.6	7	72	10	82	47	30	1	20	1.58
63991171--63991267	41	2.3	41	83	3	122	26	16	19	37	1.93
63991328--63991451	40	3.1	40	90	0	194	25	21	21	31	1.98
63994400--63994472	29	2.5	29	88	4	103	19	23	36	20	1.95
63998191--63998237	20	2.3	20	88	0	76	44	38	4	12	1.62
63999310--63999392	35	2.4	34	80	7	80	25	7	1	66	1.25
64002504--64002556	14	3.7	14	79	20	65	22	22	11	43	1.85
64003741--64003858	31	3.5	35	89	9	135	22	23	16	37	1.94
64003764--64003858	31	3.1	31	98	0	181	23	22	15	38	1.92
64004049--64004215	24	7.0	24	93	3	257	26	22	22	28	1.99
64004048--64004215	71	2.3	71	90	4	257	26	22	22	29	1.99
64004266--64004325	20	3.0	20	95	0	111	33	20	10	36	1.86
64004266--64004320	11	5.4	11	70	16	55	30	20	10	38	1.87
64004368--64004415	25	1.9	25	86	0	69	25	16	25	33	1.96
64010772--64010865	31	3.1	31	96	1	172	22	22	15	39	1.92
64011057--64011199	24	6.0	24	91	4	209	26	22	22	28	1.99
64011057--64011198	47	3.0	48	90	5	207	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64011056--64011199	71	2.0	72	89	4	220	26	22	22	29	1.99
64011250--64011309	20	3.0	20	95	0	111	33	20	10	36	1.86
64011250--64011304	11	5.4	11	70	16	55	30	20	10	38	1.87
64011352--64011399	25	1.9	25	86	0	69	25	16	25	33	1.96
64015482--64015565	42	2.0	42	100	0	168	30	16	16	35	1.92
64017698--64018217	132	3.9	131	86	4	380	30	17	25	26	1.97
64017600--64018658	176	6.0	175	80	7	1042	30	16	24	27	1.97
64017877--64018975	132	8.3	132	92	1	1756	31	16	24	27	1.97
64018274--64018884	44	13.9	45	73	7	298	31	16	24	27	1.96
64017657--64018975	396	3.3	396	88	2	1827	31	16	24	27	1.97
64019227--64019273	20	2.3	20	88	0	76	44	38	4	12	1.62
64021037--64021083	3	15.7	3	100	0	94	34	0	0	65	0.93
64034952--64035038	43	2.0	43	97	0	165	34	8	14	42	1.76
64037049--64037274	48	4.7	48	91	0	344	28	30	16	24	1.96
64039989--64040185	46	4.2	47	79	10	190	23	26	17	32	1.97
64044222--64044468	40	6.2	40	91	0	370	23	21	29	26	1.99
64052266--64052512	40	6.2	40	90	2	365	23	21	29	26	1.99
64052266--64052512	119	2.1	119	88	4	365	23	21	29	26	1.99
64053968--64054019	23	2.2	25	93	6	90	19	7	26	46	1.77
64060332--64060559	40	5.7	40	93	0	366	23	21	29	25	1.99
64063914--64063949	18	1.9	19	88	5	56	63	0	25	11	1.27
64065290--64065421	29	4.5	29	97	1	237	37	14	23	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64065290--64065421	59	2.3	58	95	1	237	37	14	23	24	1.92
64065261--64065421	88	1.8	88	90	2	261	36	14	23	25	1.93
64065261--64065423	29	5.6	29	90	4	213	36	14	23	25	1.92
64070587--64070713	46	2.7	46	82	6	139	22	25	20	31	1.98
64077468--64077499	15	2.0	17	88	11	50	21	18	21	37	1.94
64079770--64079814	22	2.0	22	100	0	90	13	31	13	42	1.82
64085344--64085548	46	4.5	45	74	11	150	23	28	19	27	1.98
64090225--64090258	17	2.0	17	94	0	59	35	32	17	14	1.91
64095402--64095454	15	3.5	15	97	0	97	13	11	20	54	1.69
64097297--64097456	43	3.7	43	72	15	134	30	24	18	27	1.98
64097329--64097448	44	2.9	41	76	9	116	30	25	18	25	1.98
64103579--64103661	26	3.3	26	80	13	109	25	14	28	31	1.95
64108001--64108071	27	2.6	28	93	2	117	29	15	26	28	1.96
64111412--64111557	73	2.0	73	98	0	283	32	13	29	24	1.94
64116429--64116499	27	2.6	28	93	2	117	29	15	26	28	1.96
64118088--64118371	40	7.2	40	89	2	405	24	20	27	27	1.99
64123992--64124039	25	1.9	25	86	0	69	35	22	14	27	1.93
64124075--64124137	20	3.2	20	90	0	108	36	12	20	30	1.90
64124192--64124288	48	2.1	47	90	7	153	30	19	19	29	1.97
64124191--64124309	23	5.0	24	84	12	156	30	20	21	28	1.98
64125252--64125283	12	2.6	13	90	9	50	50	21	6	21	1.71
64135020--64135134	40	2.9	40	82	2	124	20	22	17	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64135023--64135098	20	3.8	19	70	16	55	21	23	17	38	1.93
64135080--64135137	20	2.9	20	70	10	55	17	24	20	37	1.93
64135034--64135149	40	2.9	41	79	7	114	18	23	18	39	1.92
64139226--64139483	40	6.5	40	90	2	369	25	28	23	22	1.99
64147458--64147712	40	6.5	40	89	4	360	25	28	23	22	1.99
64147458--64147712	117	2.2	120	87	6	369	25	28	23	22	1.99
64150551--64150762	80	2.7	79	88	3	309	26	27	21	24	1.99
64150571--64150755	40	4.6	41	89	4	261	25	28	21	24	1.99
64158776--64158981	40	5.2	40	87	2	267	26	28	21	23	1.99
64158776--64158981	80	2.6	79	88	5	301	26	28	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425