genome.fa.s8.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  137  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41296570--41296626	24	2.3	25	80	14	66	31	3	1	63	1.22
41297512--41297552	19	2.2	19	86	0	55	43	0	0	56	0.99
41303627--41303658	7	4.7	7	92	7	57	87	0	0	12	0.54
41303628--41303661	6	5.3	6	96	3	50	85	0	0	14	0.60
41303627--41303658	13	2.4	13	94	5	55	87	0	0	12	0.54
41307931--41307999	26	2.5	28	86	4	97	31	26	14	27	1.95
41307931--41307999	28	2.6	27	81	9	79	31	26	14	27	1.95
41308007--41308114	42	2.6	42	98	0	207	23	33	13	29	1.93
41310521--41310598	38	2.1	38	100	0	156	26	20	10	42	1.84
41310680--41310894	45	4.9	45	73	7	174	31	25	16	26	1.97
41313552--41313633	22	3.6	22	76	12	69	32	17	24	25	1.96
41313594--41313643	23	2.2	22	78	3	55	36	20	18	26	1.95
41316632--41316717	44	2.0	44	88	2	129	36	15	23	25	1.94
41316629--41316734	43	2.4	44	84	1	142	33	16	24	26	1.96
41316629--41316746	43	2.7	43	81	1	137	34	15	23	26	1.94
41324333--41324383	21	2.5	21	87	3	77	64	3	5	25	1.33
41325010--41325034	13	1.9	13	100	0	50	8	40	36	16	1.77
41329119--41330262	570	2.0	570	97	0	2180	27	17	26	28	1.98
41333607--41333787	39	4.6	39	88	2	247	24	23	25	26	2.00
41333604--41333821	39	5.6	39	82	7	106	25	22	25	25	2.00
41342100--41342234	43	3.1	43	78	3	146	34	16	20	28	1.94
41342190--41342324	48	2.8	48	77	3	139	28	14	22	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41348727--41348886	29	5.5	29	82	4	180	25	31	16	26	1.97
41356776--41356935	29	5.5	29	82	4	180	25	31	16	26	1.97
41369579--41369679	29	3.5	29	95	1	186	28	14	29	26	1.95
41369579--41369739	29	5.6	29	84	3	107	26	16	32	25	1.96
41369575--41369700	58	2.2	59	85	5	179	28	15	30	25	1.95
41378754--41378864	46	2.4	46	79	8	127	29	18	28	23	1.97
41378975--41379071	49	2.0	50	85	2	133	26	22	29	20	1.99
41384839--41384875	19	1.9	19	100	0	74	43	32	2	21	1.67
41391100--41391153	27	2.0	27	85	0	72	38	7	14	38	1.75
41398472--41398809	180	1.9	180	86	2	482	31	20	10	37	1.87
41399365--41399558	50	3.9	50	78	4	219	29	24	18	27	1.98
41410040--41410142	29	3.5	28	81	7	100	24	16	31	28	1.96
41418158--41418260	29	3.5	28	77	7	91	22	16	32	29	1.96
41424689--41424881	40	4.9	39	82	4	226	22	27	24	24	2.00
41427878--41428070	39	4.9	40	87	1	257	23	20	31	24	1.98
41435667--41435860	40	4.9	39	86	1	235	23	19	30	25	1.98
41435678--41435830	79	1.9	79	90	2	245	24	19	30	25	1.98
41443660--41443807	40	3.7	40	81	8	176	23	27	24	25	2.00
41459931--41460089	39	4.1	39	90	0	192	28	23	20	27	1.99
41459935--41460093	78	2.0	78	87	0	228	28	22	19	28	1.98
41468017--41468175	39	4.1	39	93	0	255	28	23	20	27	1.99
41471816--41471926	27	4.2	26	79	5	114	36	18	24	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41473111--41473144	16	2.1	16	94	0	59	55	5	32	5	1.48
41473353--41473431	24	3.3	24	89	1	115	21	44	3	30	1.70
41479667--41479778	27	4.2	26	82	5	134	36	21	25	16	1.94
41481217--41481285	24	2.9	24	91	0	111	24	39	2	33	1.70
41485918--41486101	40	4.6	39	75	6	138	26	23	27	22	2.00
41485958--41486146	80	2.4	81	77	4	186	23	24	29	22	1.99
41494036--41494219	40	4.6	39	75	6	138	26	23	27	22	2.00
41494076--41494264	80	2.4	81	77	4	186	23	24	29	22	1.99
41495673--41495700	14	2.0	14	100	0	56	35	21	14	28	1.92
41497080--41497104	2	12.5	2	100	0	50	52	0	0	48	1.00
41499184--41499267	43	2.0	43	97	0	159	25	17	17	39	1.92
41501860--41501974	29	4.0	28	79	2	104	29	29	13	26	1.95
41501853--41501961	58	1.9	57	82	1	137	28	30	14	26	1.95
41508044--41508211	40	4.2	40	76	15	170	25	22	27	25	2.00
41508046--41508211	80	2.1	80	87	4	237	25	22	27	24	2.00
41516058--41516225	40	4.2	40	76	15	170	25	22	27	25	2.00
41516060--41516225	80	2.1	80	87	4	237	25	22	27	24	2.00
41525818--41526130	46	6.8	46	91	1	430	22	23	13	40	1.89
41531380--41531451	28	2.5	29	88	2	101	27	25	15	31	1.95
41540260--41540321	31	2.0	31	90	6	99	29	19	14	37	1.91
41545470--41545646	55	3.3	54	77	11	200	22	23	18	36	1.95
41545631--41545752	47	2.6	47	94	0	208	26	22	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41563038--41563145	40	2.7	40	83	1	135	27	22	26	23	1.99
41563036--41563213	40	4.4	40	75	9	112	28	23	25	22	1.99
41568257--41568459	40	5.1	40	82	5	225	26	26	22	24	2.00
41574469--41574610	41	3.5	40	85	2	167	27	22	26	23	2.00
41574469--41574635	40	4.1	40	82	3	174	28	22	25	23	1.99
41582820--41582986	49	3.4	49	90	0	280	30	10	32	26	1.90
41582974--41583007	17	2.0	17	100	0	68	23	23	35	17	1.95
41582925--41583056	66	2.0	66	93	0	228	28	12	34	24	1.92
41582876--41583220	115	3.0	115	86	6	391	28	10	33	27	1.90
41582991--41583362	49	7.2	49	75	15	340	28	9	33	29	1.88
41582827--41583318	164	3.0	164	97	0	903	28	10	33	27	1.89
41582991--41583362	98	3.6	98	73	19	378	28	9	33	29	1.88
41583138--41583171	17	2.0	17	100	0	68	23	23	35	17	1.95
41583089--41583220	66	2.0	66	95	0	237	27	12	34	26	1.92
41582820--41583367	213	2.6	213	89	4	806	29	9	33	28	1.89
41582925--41583269	115	3.0	115	87	6	454	28	10	33	27	1.90
41583464--41583548	37	2.3	37	95	0	152	24	20	34	21	1.97
41588162--41588328	49	3.4	49	90	0	280	30	10	32	26	1.90
41588316--41588349	17	2.0	17	100	0	68	23	23	35	17	1.95
41588267--41588398	66	2.0	66	93	0	228	28	12	34	24	1.92
41588218--41588562	115	3.0	115	86	6	391	28	10	33	27	1.90
41588333--41588704	49	7.2	49	75	15	340	28	9	33	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41588169--41588660	164	3.0	164	97	0	903	28	10	33	27	1.89
41588333--41588704	98	3.6	98	73	19	378	28	9	33	29	1.88
41588480--41588513	17	2.0	17	100	0	68	23	23	35	17	1.95
41588431--41588562	66	2.0	66	95	0	237	27	12	34	26	1.92
41588162--41588709	213	2.6	213	89	4	806	29	9	33	28	1.89
41588267--41588611	115	3.0	115	87	6	454	28	10	33	27	1.90
41588806--41588890	37	2.3	37	95	0	152	24	20	34	21	1.97
41590825--41590858	17	2.0	17	100	0	68	23	23	35	17	1.95
41590776--41590907	66	2.0	66	95	0	237	27	12	34	26	1.92
41590842--41591000	49	3.2	49	97	0	291	28	9	33	28	1.88
41591104--41591186	37	2.2	37	95	0	148	25	18	34	21	1.96
41596272--41596339	24	2.8	24	88	0	100	22	17	25	35	1.95
41600271--41600433	39	4.2	39	92	0	254	24	32	20	22	1.98
41607106--41607298	39	4.9	39	90	0	251	23	31	21	23	1.98
41607136--41607298	39	4.2	39	93	0	263	24	31	20	23	1.98
41609303--41609405	29	3.6	27	78	5	89	28	32	16	23	1.96
41612404--41612678	41	6.9	39	78	4	162	36	25	19	18	1.95
41612560--41612676	38	3.1	38	82	3	139	33	24	22	19	1.97
41615655--41615748	29	3.2	29	98	0	179	29	15	27	26	1.96
41615651--41615785	58	2.3	58	84	3	175	26	15	31	25	1.96
41615849--41615877	2	14.5	2	100	0	58	48	0	0	51	1.00
41617451--41617496	21	2.2	21	84	7	58	39	0	17	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41617931--41617988	26	2.2	26	87	0	80	17	24	22	36	1.95
41618031--41618123	25	3.8	24	74	5	78	18	23	22	35	1.96
41618798--41618842	22	2.0	22	83	8	56	37	4	2	55	1.32
41621225--41621276	20	2.6	20	90	0	86	11	30	32	25	1.91
41621780--41621865	30	3.2	30	66	27	91	32	22	2	43	1.66
41621780--41621881	51	2.0	51	100	0	204	33	21	1	43	1.64
41622364--41622402	19	2.1	19	95	0	69	41	12	10	35	1.77
41625698--41625775	40	2.0	40	100	0	156	41	2	5	51	1.38
41627215--41627285	37	1.9	37	94	0	124	25	30	19	23	1.98
41627431--41627615	48	3.8	48	89	4	282	31	25	7	34	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425