genome.fa.s8.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  184  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55765782--55765894	28	3.9	28	69	18	79	28	20	26	24	1.99
55771606--55771630	2	12.5	2	100	0	50	52	0	0	48	1.00
55774231--55774367	60	2.3	59	81	8	152	29	19	25	25	1.99
55774327--55774379	28	1.9	27	88	3	79	28	20	26	24	1.99
55784396--55784466	37	1.9	37	94	0	124	30	19	19	29	1.97
55786731--55786795	28	2.3	28	91	0	103	32	27	7	32	1.85
55786901--55786991	28	3.2	28	83	10	114	20	23	23	32	1.98
55786941--55787002	28	2.2	28	82	2	70	27	25	16	30	1.96
55787444--55787485	18	2.3	18	83	0	57	26	2	4	66	1.23
55801428--55801530	44	2.4	42	81	10	127	25	17	23	33	1.96
55801768--55801807	19	2.1	19	100	0	80	42	5	27	25	1.75
55806035--55806104	27	2.5	28	95	2	124	28	14	27	30	1.95
55806035--55806116	27	3.0	27	85	8	78	29	15	24	30	1.96
55813284--55813313	2	15.0	2	100	0	60	50	0	0	50	1.00
55813676--55813702	2	13.5	2	100	0	54	48	0	0	51	1.00
55815688--55815715	2	14.0	2	100	0	56	50	0	0	50	1.00
55817049--55817257	43	4.9	43	97	0	391	12	22	32	32	1.92
55817317--55817477	29	5.6	29	70	11	123	24	18	29	27	1.98
55817301--55817508	58	3.6	58	94	0	346	25	20	27	27	1.99
55817375--55817528	29	5.4	28	68	12	82	23	19	31	25	1.98
55821524--55821565	2	21.0	2	100	0	84	50	0	0	50	1.00
55827469--55827595	47	2.7	46	82	7	150	29	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55828777--55828814	20	1.9	19	94	5	67	13	36	31	18	1.89
55832433--55832524	27	3.4	26	84	3	121	28	20	9	41	1.84
55832551--55832654	27	3.9	27	85	2	120	42	20	8	28	1.81
55832551--55832711	54	2.9	55	80	9	150	41	18	9	30	1.82
55832581--55832716	27	5.0	27	82	8	125	42	17	8	31	1.78
55832770--55832858	27	3.3	26	79	6	88	38	15	23	22	1.93
55833492--55833541	25	2.0	26	88	4	75	36	22	14	28	1.92
55833578--55833638	10	5.9	10	77	11	61	36	11	19	32	1.88
55833578--55833654	21	3.7	20	81	5	82	35	12	18	33	1.89
55833686--55833743	24	2.4	25	78	16	68	31	18	22	27	1.97
55839607--55839650	15	2.6	17	79	17	56	45	2	0	52	1.13
55841686--55841727	22	1.9	22	100	0	84	28	28	9	33	1.88
55844348--55844513	40	4.2	40	94	2	282	23	22	27	25	2.00
55845982--55846020	8	4.8	8	84	6	51	35	25	0	38	1.56
55857304--55857410	55	1.9	55	90	0	169	29	28	17	24	1.97
55857304--55857435	55	2.4	55	85	6	162	31	25	16	25	1.96
55858187--55858409	44	4.8	45	71	15	150	25	30	18	25	1.98
55858228--55858428	47	4.3	46	75	14	169	24	29	18	26	1.98
55860097--55860166	27	2.5	28	88	2	106	28	14	25	31	1.95
55860097--55860178	27	3.0	27	80	8	103	29	13	23	34	1.93
55868004--55868073	27	2.5	28	88	2	106	28	14	25	31	1.95
55868004--55868085	27	3.0	27	80	8	103	29	13	23	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55872804--55872873	20	3.4	20	68	14	61	21	10	15	52	1.71
55872802--55872885	42	2.0	42	97	0	159	26	10	16	46	1.80
55876584--55876631	23	2.2	23	85	7	64	29	4	0	66	1.10
55876764--55876800	5	7.6	5	88	11	51	13	2	0	83	0.74
55876749--55876800	14	3.7	13	80	10	50	9	7	0	82	0.84
55879541--55879721	94	1.9	93	88	1	272	32	13	23	30	1.93
55880541--55880572	14	2.3	14	94	0	55	6	0	43	50	1.27
55882670--55882925	40	6.5	40	85	5	317	24	28	23	24	2.00
55884907--55884974	25	2.7	25	90	0	109	33	30	4	30	1.77
55887857--55887896	19	2.2	19	90	4	64	30	2	0	67	1.04
55887821--55888004	62	3.1	60	73	13	177	38	5	2	54	1.36
55887883--55888151	104	2.6	104	92	2	440	39	6	2	51	1.42
55888261--55888384	9	14.1	9	73	17	91	44	14	2	38	1.58
55888269--55888381	16	7.1	16	76	7	104	44	15	2	38	1.60
55888419--55888482	9	7.2	9	77	10	69	48	17	0	34	1.47
55902110--55902367	40	6.5	40	87	2	324	26	29	22	22	1.99
55905485--55905615	30	4.5	30	86	8	171	32	13	25	28	1.94
55905485--55905615	58	2.2	58	86	4	174	32	13	25	28	1.94
55913441--55913570	29	4.5	30	84	10	162	32	13	25	28	1.94
55915394--55915429	15	2.4	15	100	0	72	0	33	0	66	0.92
55924161--55924368	48	5.0	38	73	18	148	29	24	15	30	1.96
55924200--55924338	48	2.9	48	85	1	190	29	22	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55928460--55928495	16	2.3	15	86	9	54	36	0	0	63	0.94
55928891--55928929	7	5.6	7	84	0	51	64	0	33	2	1.08
55937166--55937292	50	2.7	47	74	19	122	29	18	27	24	1.98
55938661--55938787	40	3.2	39	76	8	130	22	28	24	24	2.00
55938677--55938827	40	3.8	40	77	6	137	23	26	23	26	2.00
55938677--55938826	80	1.9	80	83	8	198	22	26	24	26	2.00
55945125--55945197	38	1.9	38	83	5	94	21	24	26	27	2.00
55945447--55945474	11	2.5	11	100	0	56	39	0	7	53	1.28
55953848--55953910	24	2.6	24	74	2	72	25	19	20	34	1.96
55957196--55957231	18	2.0	18	89	10	56	38	5	27	27	1.79
55960562--55960767	40	5.2	39	85	1	232	25	25	22	26	2.00
55960562--55960767	80	2.6	80	85	1	261	25	25	22	26	2.00
55965399--55965542	39	3.7	39	92	0	243	26	20	29	22	1.99
55965400--55965582	78	2.3	79	90	1	278	24	22	29	23	1.99
55973391--55973544	39	4.0	39	93	1	274	27	20	29	22	1.98
55973391--55973544	77	2.0	78	94	1	274	27	20	29	22	1.98
55973664--55973822	30	5.5	30	87	8	213	27	25	13	32	1.94
55973664--55973822	87	1.8	87	87	2	239	27	25	13	32	1.94
55981527--55981686	29	5.5	30	88	8	222	27	25	13	33	1.94
55981527--55981686	59	2.8	57	89	4	223	27	25	13	33	1.94
55983928--55983991	31	2.1	31	96	0	119	23	21	15	39	1.92
55984183--55984301	24	5.0	24	89	5	170	26	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55984183--55984301	47	2.5	48	89	5	170	26	22	21	28	1.99
55984352--55984411	20	3.0	20	95	0	111	33	20	11	35	1.88
55984352--55984406	11	5.4	11	70	16	55	30	20	12	36	1.90
55984454--55984501	25	1.9	25	86	0	69	25	16	25	33	1.96
55991978--55992041	31	2.1	31	96	0	119	23	21	15	39	1.92
55992233--55992351	24	5.0	24	89	5	170	26	22	21	28	1.99
55992233--55992351	47	2.5	48	89	5	170	26	22	21	28	1.99
55992402--55992461	20	3.0	20	95	0	111	33	20	10	36	1.86
55992402--55992456	11	5.4	11	70	16	55	30	20	10	38	1.87
56011023--56011051	14	2.0	15	93	6	51	20	0	27	51	1.47
56018120--56018217	42	2.3	41	77	5	106	25	26	20	27	1.99
56018277--56018509	48	4.9	48	89	0	322	26	30	18	25	1.98
56021062--56021118	27	2.2	25	81	9	69	52	0	1	45	1.11
56021072--56021130	30	2.0	30	83	6	75	54	0	1	44	1.10
56025020--56025122	44	2.3	44	78	3	109	28	15	20	35	1.93
56025195--56025333	44	3.1	43	74	5	134	29	21	15	33	1.95
56025313--56025554	101	2.4	101	92	0	394	28	21	18	32	1.96
56025339--56025493	50	3.1	50	69	18	158	29	21	20	29	1.98
56025516--56025686	45	3.8	45	84	1	209	30	23	15	29	1.96
56025507--56025688	89	2.0	89	88	0	265	29	23	16	30	1.96
56025682--56025713	16	2.0	16	100	0	64	37	25	6	31	1.81
56027137--56027336	40	5.0	41	82	7	241	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56027076--56027336	80	3.3	80	81	4	262	24	26	22	26	2.00
56035233--56035456	40	5.6	40	81	2	245	23	25	24	26	2.00
56035197--56035456	40	6.5	39	78	5	204	23	25	23	26	2.00
56035197--56035456	79	3.3	81	80	5	253	23	25	23	26	2.00
56035197--56035456	119	2.2	119	80	7	296	23	25	23	26	2.00
56050537--56050709	46	3.8	45	77	13	190	21	21	27	29	1.99
56050534--56050704	93	1.8	93	93	0	297	21	21	28	28	1.99
56051605--56051669	31	2.1	31	100	0	130	38	6	9	46	1.61
56053320--56053491	93	1.8	93	96	0	317	27	30	22	20	1.98
56053312--56053487	46	3.8	46	81	10	232	28	29	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425