genome.fa.s8.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  228  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69432566--69432762	70	2.8	70	90	4	258	20	28	16	34	1.95
69436288--69436437	39	3.8	39	88	0	183	24	32	22	21	1.98
69436324--69436437	39	2.9	39	93	1	192	24	32	20	22	1.98
69443306--69443469	71	2.3	71	100	0	328	18	28	17	35	1.94
69454907--69455051	40	3.7	40	86	2	186	22	22	31	23	1.99
69454905--69455075	80	2.2	79	79	5	184	23	21	30	23	1.99
69462892--69463033	38	3.6	39	85	3	187	23	21	30	23	1.99
69465695--69465719	12	2.1	12	100	0	50	40	24	0	36	1.55
69471402--69471458	26	2.2	26	84	15	73	49	15	0	35	1.45
69477988--69478088	28	3.5	28	86	6	114	29	26	13	29	1.94
69485903--69486003	28	3.5	28	86	6	114	29	26	13	29	1.94
69487904--69488065	23	6.9	23	74	14	118	35	19	20	24	1.96
69487913--69488065	45	3.3	46	78	9	132	35	20	20	23	1.96
69487918--69488050	22	5.9	21	74	12	95	35	20	21	22	1.96
69491176--69491286	27	4.1	26	80	6	114	34	19	19	26	1.96
69495013--69495208	27	7.3	27	79	3	189	39	14	13	32	1.85
69495009--69495274	81	3.3	81	80	5	254	38	16	12	32	1.86
69495013--69495244	27	8.6	27	77	6	163	39	15	12	31	1.86
69495050--69495244	54	3.6	54	80	9	200	38	16	12	31	1.87
69495267--69495371	27	3.9	27	81	5	97	35	18	19	27	1.94
69497690--69497715	12	2.2	12	100	0	52	15	0	7	76	0.99
69499344--69499404	30	2.0	30	87	0	86	39	6	22	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69502008--69502041	18	1.9	18	88	5	52	14	26	20	38	1.91
69504491--69504515	4	6.2	4	100	0	50	76	0	24	0	0.80
69504776--69504802	12	2.2	12	100	0	54	55	0	7	37	1.28
69506114--69506155	21	2.0	21	100	0	84	23	4	19	52	1.65
69511914--69512077	27	6.1	27	85	0	202	33	20	20	25	1.97
69512481--69512544	33	1.9	33	87	9	94	26	25	25	23	2.00
69520641--69520712	29	2.5	28	86	6	92	30	15	26	27	1.96
69524567--69524609	17	2.4	18	84	7	61	46	11	16	25	1.80
69524920--69525053	27	5.0	27	83	0	151	41	18	14	25	1.88
69526777--69526820	20	2.2	20	100	0	88	34	6	43	15	1.74
69530499--69531583	540	2.0	540	99	0	2154	33	15	16	34	1.90
69533994--69534090	28	3.4	27	85	7	115	30	26	14	27	1.95
69541988--69542084	28	3.4	27	85	7	115	30	26	14	27	1.95
69548068--69548175	39	2.8	39	85	5	155	33	21	24	21	1.97
69548166--69548305	38	3.6	38	83	1	154	20	20	27	32	1.97
69550585--69550715	65	2.0	65	96	0	244	25	26	19	29	1.98
69555275--69555386	29	3.9	29	85	2	138	25	32	16	26	1.96
69555275--69555386	57	2.0	57	85	7	156	25	32	16	26	1.96
69563325--69563358	6	5.7	6	96	0	50	5	0	8	85	0.75
69565304--69565434	29	4.5	29	99	0	253	37	14	24	23	1.92
69573376--69573506	29	4.5	29	98	0	244	38	14	23	23	1.92
69576377--69576498	28	4.3	28	87	2	165	27	33	13	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69576377--69576498	57	2.2	56	88	4	174	27	33	13	24	1.94
69577034--69577175	75	1.9	75	98	0	275	45	26	10	17	1.81
69600257--69600355	28	3.5	28	81	9	112	29	25	16	29	1.96
69607862--69607960	28	3.5	28	81	9	112	29	25	16	29	1.96
69610410--69610535	63	2.0	63	100	0	252	33	20	9	36	1.85
69613105--69613203	28	3.5	28	81	9	112	29	25	16	29	1.96
69620723--69620821	28	3.5	28	81	9	112	29	25	16	29	1.96
69625759--69625813	13	4.3	12	81	9	56	21	1	1	74	1.01
69625758--69625813	25	2.2	25	87	6	78	23	1	1	73	1.03
69627406--69627441	1	36.0	1	88	0	54	0	0	5	94	0.31
69630462--69630637	46	3.8	46	79	12	216	20	21	29	28	1.98
69630459--69630630	93	1.8	93	96	0	317	20	21	29	27	1.98
69633054--69633156	29	3.6	29	82	0	116	21	15	33	30	1.94
69639881--69639979	28	3.5	29	83	6	114	30	27	15	27	1.96
69641925--69641959	16	2.2	16	94	0	61	48	20	22	8	1.76
69642196--69642289	28	3.3	28	87	1	134	27	13	30	27	1.94
69643590--69643622	18	1.9	17	88	11	50	45	12	15	27	1.81
69645109--69645152	21	2.1	21	100	0	88	34	4	18	43	1.70
69646352--69646481	45	2.9	45	88	2	183	23	21	29	26	1.99
69649403--69649572	43	4.0	43	74	10	152	28	14	23	33	1.94
69649413--69649571	86	1.9	85	82	6	205	28	14	23	33	1.94
69653587--69653811	40	5.7	40	88	1	285	26	27	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69661763--69661932	40	4.3	40	79	3	175	25	25	24	24	2.00
69667655--69667749	25	3.8	25	91	0	145	26	22	25	26	2.00
69667951--69668165	27	8.0	27	85	1	270	24	20	19	36	1.95
69667951--69668166	80	2.7	80	85	5	283	24	19	18	36	1.95
69667970--69668198	107	2.1	106	82	5	273	25	17	18	37	1.93
69667998--69668252	107	2.4	107	79	6	241	26	16	18	38	1.92
69668127--69668333	107	1.9	106	80	6	240	28	11	19	39	1.87
69668169--69668360	79	2.4	81	79	3	210	31	9	17	41	1.82
69668169--69668333	27	6.2	26	83	5	170	30	10	18	40	1.84
69668362--69668750	27	14.4	27	89	1	564	40	8	22	29	1.83
69671226--69671370	43	3.4	42	78	6	148	28	13	23	33	1.93
69672315--69672346	13	2.5	13	100	0	64	28	9	28	34	1.88
69673952--69674099	43	3.4	44	76	5	151	27	14	23	33	1.94
69681078--69681224	43	3.4	43	75	5	145	27	16	24	31	1.96
69682626--69682687	31	2.0	31	100	0	124	35	3	22	38	1.71
69685773--69685813	20	2.0	20	100	0	82	14	24	19	41	1.89
69686359--69686480	29	4.3	28	74	8	104	28	13	31	26	1.94
69690588--69690630	16	2.7	16	92	0	68	51	13	20	13	1.76
69690862--69690986	28	4.4	28	79	14	132	31	16	28	24	1.96
69690863--69690986	29	4.4	28	84	7	144	31	16	27	25	1.96
69703577--69703913	43	8.0	43	80	6	375	24	16	27	31	1.96
69703577--69703913	82	4.0	84	83	7	382	24	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69703579--69703913	125	2.7	125	82	4	372	25	15	27	31	1.96
69703875--69704050	56	3.1	56	85	1	237	27	14	24	34	1.94
69707418--69707581	71	2.3	71	100	0	328	18	28	17	35	1.94
69707418--69707615	71	2.8	70	91	3	258	20	28	17	33	1.95
69712320--69712407	34	2.6	34	85	0	113	28	21	20	29	1.98
69712678--69712727	23	2.2	23	86	13	68	42	18	14	26	1.87
69712806--69712876	28	2.6	27	90	2	106	19	18	22	39	1.92
69712763--69712876	27	4.2	27	80	4	113	21	20	19	39	1.93
69712871--69712994	53	2.3	54	81	6	171	39	16	12	32	1.85
69712872--69712997	27	4.7	27	89	2	173	38	15	14	31	1.88
69716280--69716356	24	3.2	24	70	12	77	41	7	35	15	1.76
69717968--69718048	33	2.4	34	77	8	94	28	18	23	29	1.98
69717968--69718061	32	2.9	30	73	12	71	26	20	25	27	1.99
69721674--69721771	34	2.9	34	79	0	106	27	20	20	31	1.97
69722157--69722262	27	3.9	27	83	0	113	22	15	19	42	1.88
69722251--69722313	27	2.3	27	84	7	83	34	12	19	33	1.89
69722175--69722313	54	2.6	54	78	4	120	26	13	20	39	1.90
69722238--69722474	81	2.9	80	86	5	307	34	16	16	32	1.91
69722270--69722474	27	7.6	27	92	0	320	35	15	16	32	1.91
69726318--69726489	93	1.8	93	96	0	317	27	30	22	20	1.98
69726310--69726485	46	3.8	46	81	10	232	28	29	21	20	1.98
69740783--69740852	27	2.5	28	95	2	124	28	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69740783--69740864	27	3.0	27	85	8	78	29	15	24	30	1.96
69746961--69747029	27	2.5	28	90	6	106	31	26	14	27	1.95
69754630--69754728	28	3.5	28	81	9	112	29	25	16	29	1.96
69757613--69757644	16	2.0	16	100	0	64	43	18	12	25	1.85
69758492--69758627	54	2.5	54	93	0	236	26	19	25	28	1.99
69762655--69762690	2	18.0	2	100	0	72	50	0	0	50	1.00
69782294--69782420	46	2.8	45	84	10	159	29	20	29	20	1.98
69782294--69782520	49	4.8	48	76	12	182	29	21	27	21	1.98
69790990--69791079	11	7.5	11	73	22	74	44	3	0	52	1.17
69791005--69791075	29	2.4	30	86	13	94	46	4	0	49	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425