genome.fa.s8.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  133  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39968519--39968633	27	4.3	27	82	4	79	36	21	7	33	1.83
39968409--39968581	81	2.2	80	77	3	177	39	23	8	28	1.84
39968408--39968582	54	3.3	54	76	7	176	38	22	8	29	1.84
39968560--39968862	27	11.2	27	86	1	374	29	22	7	40	1.82
39969097--39969148	27	2.0	26	84	3	68	17	26	21	34	1.95
39969369--39969447	31	2.5	31	87	4	106	17	18	16	46	1.84
39969444--39969477	18	1.9	17	88	5	50	23	11	11	52	1.70
39969369--39969456	6	14.3	6	75	9	70	19	18	15	46	1.84
39971911--39972040	40	3.2	40	84	4	174	22	24	29	23	1.99
39979882--39980011	40	3.2	40	84	4	174	22	24	29	23	1.99
39982561--39982703	27	5.4	26	75	6	108	39	22	8	30	1.83
39982697--39982998	27	11.2	27	84	1	354	29	21	7	41	1.81
39983220--39983357	71	2.0	67	85	5	186	18	28	22	30	1.98
39985138--39985290	27	5.7	25	74	12	117	39	22	8	29	1.84
39985132--39985306	54	3.3	53	75	10	167	39	22	8	30	1.83
39985284--39985585	27	11.2	27	85	1	363	29	20	8	41	1.81
39985246--39985575	81	4.1	81	81	4	209	31	20	8	40	1.81
39985807--39985944	71	2.0	67	85	5	186	18	28	22	30	1.98
39986090--39986149	6	9.8	6	80	3	66	18	15	16	50	1.79
39991339--39991509	93	1.8	93	87	2	254	22	19	28	29	1.98
39996938--39997101	29	5.7	29	88	0	238	30	15	23	31	1.95
40016178--40016322	40	3.6	40	85	4	193	24	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40016178--40016343	40	4.2	40	83	3	183	24	24	25	25	2.00
40029247--40029357	27	4.2	26	87	5	150	36	22	25	15	1.93
40033675--40033709	18	1.9	18	100	0	70	45	11	11	31	1.76
40038158--40038340	40	4.6	40	83	3	181	23	26	22	27	1.99
40046186--40046368	40	4.6	40	83	3	181	23	26	22	27	1.99
40057551--40057758	40	5.2	39	82	3	202	25	25	23	25	2.00
40057551--40057757	80	2.6	80	82	3	238	25	26	23	25	2.00
40065495--40065702	40	5.2	39	81	5	211	25	25	23	25	2.00
40065495--40065701	80	2.6	80	82	3	238	25	26	23	25	2.00
40067380--40067423	21	2.1	21	83	8	54	43	11	9	36	1.72
40070687--40070861	49	3.5	49	80	6	226	30	26	17	25	1.97
40091373--40091424	18	2.7	19	82	14	54	71	5	21	1	1.17
40093821--40093877	28	2.0	28	100	0	114	40	10	28	21	1.86
40096781--40096878	47	2.1	47	86	3	135	30	10	15	43	1.79
40097655--40097859	45	4.6	45	86	6	258	23	21	24	29	1.99
40102782--40102983	40	5.1	40	75	9	148	23	24	27	24	2.00
40102781--40102932	78	1.9	79	84	5	200	25	23	26	24	2.00
40110854--40111055	40	5.1	40	75	9	148	23	24	27	24	2.00
40110853--40111004	78	1.9	79	84	5	200	25	23	26	24	2.00
40114957--40115010	27	2.0	27	85	3	74	35	20	22	22	1.96
40115011--40115156	27	5.4	27	85	3	186	26	21	17	34	1.96
40117635--40117787	39	3.9	39	92	0	252	23	20	32	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40117636--40117818	39	4.6	39	89	0	249	23	22	31	22	1.99
40125720--40125870	39	3.9	39	90	3	234	23	20	32	23	1.98
40125721--40125901	39	4.6	39	87	2	231	23	22	31	22	1.98
40129511--40129745	47	5.1	47	88	5	327	31	9	14	44	1.77
40129511--40129736	90	2.5	90	86	5	303	31	9	14	44	1.77
40130520--40130691	45	3.9	44	81	6	179	25	21	26	26	1.99
40144960--40145010	20	2.5	20	84	6	59	29	25	13	31	1.94
40147867--40147913	24	2.0	24	91	0	76	42	14	6	36	1.72
40147933--40148019	40	2.2	40	87	2	129	47	11	12	28	1.76
40150269--40150303	17	2.0	17	88	5	52	5	31	2	60	1.35
40153707--40153853	47	3.1	47	88	0	204	33	10	29	27	1.89
40154063--40154174	37	3.0	37	89	0	161	22	17	32	27	1.97
40163104--40163200	28	3.5	28	91	1	142	32	24	14	27	1.94
40163187--40163285	42	2.4	42	100	0	198	21	34	15	29	1.94
40171093--40171189	28	3.5	28	92	1	151	34	24	13	27	1.93
40171176--40171274	42	2.4	42	96	0	180	22	33	14	30	1.93
40177877--40177933	30	1.9	30	85	0	78	40	7	21	31	1.80
40178662--40178845	67	2.8	64	77	8	194	30	17	29	22	1.97
40188469--40188618	67	2.2	67	81	8	171	32	17	28	21	1.96
40188493--40188676	67	2.8	64	77	8	194	29	17	29	22	1.97
40190758--40190854	28	3.5	28	92	1	151	34	24	13	27	1.93
40190841--40190939	42	2.4	42	96	0	180	22	33	14	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40198318--40198501	67	2.8	64	77	8	194	29	17	29	22	1.97
40201575--40201755	49	3.7	49	87	2	274	25	17	28	28	1.98
40201574--40201755	99	1.8	99	96	2	339	25	17	28	28	1.98
40203845--40203880	8	4.3	9	83	16	51	50	22	19	8	1.74
40204106--40204198	28	3.3	28	89	0	132	22	12	34	30	1.92
40204127--40204218	28	3.3	28	86	3	78	29	14	32	23	1.94
40204106--40204218	56	2.0	56	81	3	129	25	14	32	27	1.94
40206302--40206413	49	2.3	49	80	0	125	25	28	15	30	1.96
40206390--40206559	48	3.6	48	78	6	202	24	27	20	28	1.99
40206390--40206564	94	1.9	94	93	0	305	23	28	20	28	1.99
40206390--40206604	94	2.3	93	87	4	299	24	27	20	28	1.99
40211368--40211493	42	3.0	40	81	9	119	26	18	30	25	1.98
40213465--40213540	39	1.9	39	94	0	134	36	13	28	21	1.91
40216782--40216969	40	4.7	40	90	3	299	23	28	23	24	2.00
40218582--40218769	40	4.7	40	89	1	261	25	28	21	23	1.99
40218562--40218773	80	2.7	79	88	3	309	26	27	21	24	1.99
40226593--40226780	40	4.7	40	91	1	288	25	29	22	22	1.99
40226573--40226784	80	2.7	79	90	3	336	26	28	21	23	1.99
40235984--40236171	40	4.7	40	92	3	317	25	27	22	24	2.00
40235951--40236171	119	1.9	119	87	5	331	24	27	22	25	2.00
40244143--40244413	48	5.6	48	75	5	242	26	19	30	22	1.98
40244128--40244413	96	3.0	97	85	1	351	26	19	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40246632--40246657	13	2.0	13	100	0	52	30	0	23	46	1.53
40247748--40247912	44	3.9	42	76	9	163	24	20	25	29	1.99
40253314--40253551	27	8.8	27	88	0	341	29	21	7	41	1.81
40253290--40253749	27	17.1	27	81	2	210	35	21	7	35	1.82
40253544--40253712	81	2.1	81	86	2	232	42	20	7	28	1.80
40253742--40253929	27	7.0	27	89	0	277	35	20	20	23	1.96
40254134--40254203	25	2.8	25	93	0	113	25	27	22	24	2.00
40254133--40254216	25	3.4	24	83	8	98	28	23	22	25	1.99
40254134--40254228	50	1.9	50	80	8	113	27	25	23	24	2.00
40254351--40254442	42	2.2	42	98	0	175	31	15	20	32	1.94
40254466--40254580	31	3.7	31	95	1	205	27	16	26	28	1.97
40262735--40262760	13	2.0	13	100	0	52	30	0	23	46	1.53
40286937--40287130	40	4.9	40	92	0	318	27	23	27	22	1.99
40296886--40297053	40	4.2	40	79	3	160	23	26	23	27	2.00
40296902--40297051	80	1.9	80	83	8	198	22	26	24	27	1.99
40302731--40302914	40	4.6	39	75	6	138	26	23	27	22	2.00
40302771--40302959	80	2.4	81	77	4	186	23	24	29	22	1.99
40310849--40311032	40	4.6	39	75	6	138	26	23	27	22	2.00
40310889--40311077	80	2.4	81	77	4	186	23	24	29	22	1.99
40314274--40314320	19	2.3	20	82	10	60	51	12	0	36	1.40
40314541--40314599	30	2.0	30	82	0	73	27	27	8	37	1.85
40333651--40333874	40	5.6	40	85	8	294	25	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40333651--40333874	83	2.8	80	87	5	301	25	27	23	24	2.00
40335923--40336086	71	2.3	71	100	0	328	18	28	17	35	1.94
40335923--40336120	71	2.8	70	91	3	258	20	28	17	33	1.95
40344213--40344436	40	5.6	40	85	6	292	26	26	22	24	2.00
40344213--40344436	83	2.8	80	86	4	299	26	26	22	24	2.00
40348428--40348512	43	2.0	43	86	13	122	21	18	27	32	1.97
40350819--40350942	27	4.6	27	74	12	103	38	22	9	29	1.86
40350870--40350968	27	3.7	26	71	14	67	40	20	9	30	1.83
40350895--40350973	27	2.9	27	78	10	81	39	21	11	27	1.88
40350898--40350982	27	3.2	26	75	18	68	43	21	9	25	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425