genome.fa.s8.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  119  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35387746--35387797	25	2.1	25	100	0	104	46	19	0	34	1.50
35391179--35391511	50	6.7	50	80	2	373	27	17	25	29	1.98
35391179--35391501	99	3.2	100	87	3	427	27	17	25	29	1.97
35391712--35391743	16	2.0	16	100	0	64	43	0	18	37	1.51
35394364--35394420	27	2.1	27	96	0	105	29	14	8	47	1.74
35398972--35399191	38	5.7	38	86	1	296	18	22	26	33	1.96
35399377--35399509	45	3.0	45	84	5	162	22	16	30	30	1.96
35399377--35399509	44	3.0	45	82	7	155	22	16	30	30	1.96
35405125--35405253	38	3.4	38	91	0	213	23	21	23	31	1.98
35405236--35405277	21	2.0	21	100	0	84	23	19	19	38	1.93
35405519--35405688	43	3.8	45	84	5	186	22	17	29	30	1.97
35405512--35405688	44	4.0	44	82	7	189	23	16	28	30	1.97
35423093--35423177	27	3.2	27	89	1	118	38	22	22	16	1.92
35424566--35424670	24	4.4	23	83	5	129	20	36	3	39	1.71
35426815--35426944	40	3.3	39	76	8	136	23	27	23	24	2.00
35426831--35426982	40	3.8	40	78	6	148	22	26	23	27	1.99
35426831--35426980	80	1.9	80	83	8	198	22	26	24	27	1.99
35434825--35434954	40	3.3	39	76	8	136	23	27	23	24	2.00
35434841--35434992	40	3.8	40	78	6	148	22	26	23	27	1.99
35434841--35434990	80	1.9	80	83	8	198	22	26	24	27	1.99
35447306--35447430	63	2.0	63	95	0	223	30	11	15	43	1.81
35453702--35454151	27	16.7	27	85	1	530	39	20	8	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35453702--35454094	54	7.3	54	90	1	601	39	19	8	32	1.82
35453695--35454094	107	3.7	108	91	2	635	39	20	8	32	1.82
35453702--35454149	161	2.8	161	87	1	603	39	20	8	31	1.83
35454190--35454431	27	9.0	27	87	3	301	35	18	20	25	1.95
35454195--35454431	81	3.0	80	89	3	352	36	17	20	25	1.94
35454776--35454835	27	2.3	26	85	2	75	21	21	20	36	1.95
35454995--35455091	6	15.8	6	72	16	65	19	16	15	48	1.81
35454983--35455080	31	3.2	31	92	0	151	20	15	15	48	1.80
35456428--35456543	39	3.0	39	94	0	196	23	20	28	27	1.99
35456428--35456589	78	2.1	78	81	4	184	22	21	27	27	1.99
35456428--35456589	39	4.2	39	87	1	146	22	21	27	27	1.99
35469646--35469827	40	4.6	40	87	4	253	23	23	26	26	2.00
35473512--35473906	27	14.7	27	84	0	468	39	19	8	32	1.81
35473506--35473879	54	6.9	54	89	0	552	39	19	8	33	1.81
35473506--35473879	108	3.5	108	92	0	615	39	19	8	33	1.81
35473512--35473960	27	16.7	27	78	6	385	38	20	8	32	1.82
35473783--35473979	80	2.5	80	80	5	193	38	20	9	30	1.85
35473512--35474015	27	18.7	27	75	9	341	38	20	7	32	1.82
35473998--35474246	27	9.3	27	81	8	212	38	18	18	24	1.93
35474002--35474227	54	4.2	54	81	1	240	38	19	18	23	1.93
35474002--35474227	81	2.8	80	83	2	274	38	19	18	23	1.93
35476263--35476446	40	4.6	39	83	5	208	28	22	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35476262--35476467	79	2.6	80	82	5	238	26	21	26	25	2.00
35476261--35476467	40	5.2	39	82	6	202	27	21	26	25	2.00
35484091--35484151	30	2.0	30	83	0	77	31	22	8	37	1.84
35488087--35488238	66	2.3	64	83	7	180	21	29	16	32	1.95
35488033--35488283	67	3.8	64	77	11	201	24	29	16	29	1.97
35488747--35488806	29	2.0	30	83	3	77	33	23	5	38	1.76
35492949--35493200	67	3.8	64	77	12	203	24	29	17	29	1.97
35499160--35499649	247	2.0	247	93	0	838	33	21	11	33	1.89
35508048--35508171	48	2.6	47	84	2	167	29	16	27	26	1.97
35508048--35508221	48	3.6	47	78	8	163	29	18	25	26	1.98
35508143--35508260	48	2.5	48	82	0	137	28	17	24	28	1.98
35524907--35525249	45	7.5	45	75	10	250	27	19	27	25	1.99
35524907--35525249	91	3.8	90	77	8	293	27	19	27	25	1.99
35527997--35528133	11	13.0	10	72	22	95	64	1	4	29	1.21
35527947--35528133	15	12.9	14	71	18	91	63	2	3	31	1.24
35528000--35528133	3	42.3	3	68	25	64	64	1	4	29	1.21
35528157--35528197	14	2.9	14	88	3	64	58	0	0	41	0.98
35533867--35533969	29	3.6	28	80	5	116	29	33	16	21	1.95
35541884--35541986	29	3.6	28	80	5	116	29	33	16	21	1.95
35546550--35546667	54	2.2	54	82	1	146	18	23	28	28	1.98
35550792--35550818	13	2.1	13	100	0	54	14	37	33	14	1.88
35551195--35551373	43	4.2	43	82	5	175	31	28	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35554950--35554995	20	2.3	21	78	14	53	26	17	26	30	1.97
35555072--35555129	28	2.1	27	87	3	80	32	13	25	27	1.94
35564364--35564414	20	2.7	19	82	14	54	41	0	21	37	1.54
35565855--35565920	25	2.7	25	95	4	118	30	19	37	12	1.88
35566627--35566795	54	3.1	54	80	5	191	39	21	9	30	1.85
35566621--35566795	81	2.2	80	81	8	212	38	21	9	30	1.85
35566773--35567012	27	8.9	27	89	0	336	31	22	7	39	1.82
35566627--35567101	27	17.6	27	79	6	173	36	21	8	34	1.84
35567003--35567128	27	4.7	26	79	5	126	42	19	9	28	1.82
35567003--35567128	54	2.3	54	82	2	146	42	19	9	28	1.82
35567003--35567145	27	5.3	27	80	5	101	41	17	11	29	1.85
35567767--35567835	28	2.5	27	88	9	104	40	27	11	20	1.87
35569012--35569077	25	2.7	25	95	4	118	30	19	37	12	1.88
35569778--35569950	81	2.2	80	81	5	206	38	20	9	31	1.84
35569778--35570258	54	8.9	54	80	6	210	35	20	8	35	1.84
35569799--35570177	81	4.7	79	78	7	212	33	22	8	35	1.85
35569930--35570169	27	8.9	27	89	0	336	30	22	7	38	1.83
35569809--35570258	27	16.7	27	81	6	184	35	21	8	34	1.84
35569944--35570196	81	3.1	79	76	5	265	32	21	8	38	1.83
35570119--35570286	81	2.1	80	79	9	180	38	19	10	32	1.85
35570160--35570285	27	4.7	26	82	5	144	42	18	9	30	1.82
35570160--35570285	54	2.3	54	84	2	164	42	18	9	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35570160--35570302	27	5.3	27	83	5	112	40	16	11	30	1.85
35570924--35570992	28	2.5	28	95	2	122	43	27	10	18	1.82
35572615--35572676	27	2.3	27	91	0	106	29	20	29	20	1.98
35581410--35581475	28	2.4	28	86	0	87	33	30	9	27	1.88
35581480--35581555	40	1.9	40	91	0	125	34	30	14	21	1.93
35584973--35584999	9	3.0	9	100	0	54	44	11	0	44	1.39
35590866--35591028	71	2.3	70	98	1	317	34	17	28	19	1.94
35594066--35594603	268	2.0	268	100	0	1076	27	18	23	30	1.98
35598639--35598801	70	2.3	71	97	1	310	34	18	28	19	1.95
35601059--35601093	17	2.2	17	90	10	56	74	0	5	20	1.02
35602018--35602171	29	5.5	27	71	18	84	44	1	1	51	1.20
35602114--35602139	12	2.2	12	100	0	52	53	0	0	46	1.00
35618356--35618506	40	3.8	40	77	13	134	27	23	26	22	2.00
35618392--35618522	40	3.3	40	79	2	156	25	23	27	23	2.00
35626344--35626494	40	3.8	40	77	13	134	27	23	26	22	2.00
35626380--35626510	40	3.3	40	79	2	156	25	23	27	23	2.00
35637049--35637212	71	2.3	71	100	0	328	18	28	17	35	1.94
35637049--35637246	71	2.8	70	91	3	258	20	28	17	33	1.95
35638521--35638619	27	3.5	28	77	4	92	32	25	14	28	1.94
35646597--35646695	27	3.5	28	80	4	101	32	26	14	27	1.94
35652139--35652262	46	2.7	44	82	9	144	22	30	17	29	1.97
35654891--35654926	18	2.0	18	88	0	54	25	25	13	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35659720--35659889	48	3.6	48	74	6	148	23	27	17	31	1.97
35659754--35659928	94	1.9	94	84	4	237	23	27	18	30	1.97
35662522--35662558	2	18.5	2	100	0	74	51	0	0	48	1.00
35662802--35662959	47	3.4	47	97	0	298	48	14	9	27	1.75
35664829--35664900	28	2.5	29	91	6	112	30	15	26	27	1.96
35672767--35672838	28	2.5	29	91	6	112	30	15	26	27	1.96
35676983--35677235	40	6.4	38	88	6	289	24	20	27	26	1.99
35676983--35677209	117	1.9	119	85	7	320	24	20	28	26	1.99
35676983--35677235	117	2.1	119	83	10	306	24	20	27	26	1.99
35686758--35686902	40	3.6	39	79	3	137	24	24	28	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425