genome.fa.s8.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  156  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47459946--47460078	58	2.3	58	80	2	133	24	17	33	24	1.96
47463609--47463817	40	5.2	41	84	4	257	24	21	26	26	1.99
47463609--47463790	81	2.3	80	86	2	240	25	22	26	24	2.00
47471645--47471849	40	5.2	40	82	6	240	25	21	27	25	1.99
47488731--47488871	27	5.2	26	80	11	160	17	24	23	34	1.96
47488728--47488871	54	2.7	54	94	2	245	17	24	23	34	1.96
47488731--47488889	81	2.0	80	82	8	198	18	23	22	35	1.96
47491918--47492031	40	2.8	40	93	2	185	25	21	25	28	1.99
47496972--47497110	39	3.5	39	84	5	140	22	28	24	25	2.00
47496973--47497163	40	4.8	40	79	7	194	23	28	23	24	2.00
47496980--47497163	79	2.3	81	83	8	227	23	27	23	24	2.00
47514279--47514304	13	2.0	13	100	0	52	61	7	0	30	1.24
47518095--47518315	46	4.7	46	83	10	254	28	18	30	22	1.97
47518095--47518362	92	2.9	92	79	8	224	28	18	30	23	1.97
47520244--47520436	26	7.3	26	79	2	197	27	16	22	33	1.95
47520249--47520447	53	3.8	53	84	2	256	27	16	22	34	1.95
47527064--47527152	45	2.0	45	97	0	169	31	15	24	28	1.96
47528098--47528319	48	4.7	47	78	11	188	25	18	31	25	1.98
47528047--47528319	46	5.7	50	79	13	249	24	18	31	25	1.98
47531100--47531164	32	2.0	32	96	0	121	24	9	13	52	1.70
47533547--47533645	43	2.3	43	78	3	110	28	20	26	25	1.99
47534938--47535037	41	2.4	42	80	16	118	29	28	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47542414--47542471	13	4.5	13	84	0	71	37	27	8	25	1.85
47544488--47544581	42	2.2	42	84	0	116	22	24	30	22	1.99
47545036--47545111	27	2.8	26	74	5	71	27	9	19	43	1.81
47551391--47551451	26	2.3	26	91	0	95	19	16	27	36	1.93
47557903--47557960	24	2.2	28	80	17	72	6	34	3	55	1.44
47562215--47562537	27	12.0	27	85	0	407	35	19	19	25	1.96
47565720--47565972	39	6.4	40	83	5	225	29	27	21	21	1.99
47566050--47566131	28	2.9	28	83	0	101	29	24	10	35	1.90
47567664--47568011	27	13.0	27	86	1	448	34	20	20	23	1.96
47567664--47568011	80	4.3	81	83	1	448	34	20	20	23	1.96
47568392--47568452	28	2.2	27	80	5	68	26	22	22	27	1.99
47568383--47568479	33	3.1	33	73	14	96	27	23	22	25	2.00
47568383--47568507	61	2.0	61	81	3	144	26	24	23	25	2.00
47569350--47569478	46	2.8	46	82	7	145	30	17	28	23	1.97
47570488--47570566	41	1.9	40	87	10	115	18	20	41	18	1.90
47579661--47579902	47	5.1	47	84	3	265	31	9	30	27	1.89
47579661--47579950	94	3.1	93	79	7	284	32	9	30	27	1.89
47579825--47580008	98	1.9	96	91	4	298	35	7	26	30	1.83
47579824--47580008	48	3.8	48	88	5	291	35	7	26	30	1.83
47580154--47580262	37	2.9	37	87	0	155	23	18	29	28	1.98
47584559--47584772	46	4.7	44	77	11	164	28	16	29	25	1.97
47584559--47584727	46	3.6	46	80	6	171	28	15	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47586290--47586334	21	2.1	21	84	8	56	48	4	17	28	1.66
47589245--47589269	9	2.8	9	100	0	50	12	0	20	68	1.21
47589898--47589967	30	2.3	30	100	0	140	24	32	24	18	1.97
47590845--47591133	48	6.0	49	76	8	238	27	26	19	26	1.99
47591186--47591374	89	2.1	89	96	0	344	37	22	12	28	1.90
47596878--47597056	39	4.6	39	89	2	238	24	22	31	22	1.98
47604827--47604978	39	3.9	39	92	1	234	23	21	32	23	1.98
47604828--47604978	77	1.9	79	91	2	252	23	21	32	23	1.98
47607897--47607997	50	2.0	50	100	0	202	33	26	15	23	1.95
47612508--47612666	48	3.3	48	84	1	201	28	23	18	29	1.98
47616737--47616806	28	2.5	28	90	4	106	32	27	12	27	1.93
47617360--47617397	2	19.0	2	100	0	76	50	0	0	50	1.00
47624666--47624735	28	2.5	28	90	4	106	32	27	12	27	1.93
47625287--47625323	2	18.5	2	100	0	74	51	0	0	48	1.00
47626346--47626384	20	2.0	20	89	0	60	51	0	12	35	1.40
47626707--47626740	17	2.0	17	88	0	50	17	0	29	52	1.45
47635878--47636115	47	5.1	47	91	0	350	34	10	28	27	1.89
47635947--47636023	22	3.4	22	67	22	68	33	12	28	24	1.93
47636016--47636095	25	3.3	25	67	28	73	33	8	27	30	1.87
47635903--47636161	141	1.8	141	85	4	371	33	11	29	25	1.91
47635878--47636161	94	3.0	94	87	2	329	33	10	29	26	1.89
47637826--47638004	47	3.8	46	77	10	143	22	29	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47637826--47638004	94	1.9	94	83	2	234	22	29	20	27	1.98
47639243--47639334	42	2.2	42	96	0	166	21	29	26	22	1.99
47643443--47643497	28	2.0	28	96	0	101	21	10	20	47	1.80
47647708--47647762	28	2.0	28	100	0	110	20	10	21	47	1.80
47653765--47654267	250	2.0	250	98	0	961	45	15	12	26	1.82
47659965--47660200	27	8.7	27	79	6	230	39	18	10	30	1.85
47659963--47660200	54	4.4	54	83	5	268	39	18	10	31	1.85
47659963--47660200	81	2.9	81	79	11	290	39	18	10	31	1.85
47660155--47660216	27	2.3	27	91	0	97	40	12	16	30	1.86
47660577--47660633	22	2.6	22	82	0	60	17	19	21	42	1.90
47660622--47660724	27	3.8	27	73	0	89	21	21	18	38	1.93
47660703--47660772	32	2.2	32	86	0	95	25	21	20	32	1.97
47668695--47668728	18	1.9	17	88	5	50	23	14	5	55	1.61
47671419--47671488	27	2.6	27	97	2	131	31	27	12	28	1.93
47679275--47679345	27	2.6	27	95	4	124	30	26	14	28	1.95
47682316--47682423	42	2.6	42	96	0	198	28	14	33	23	1.94
47682429--47682498	27	2.5	28	86	2	97	27	14	25	32	1.94
47684085--47684148	32	2.0	33	87	3	94	28	21	21	28	1.99
47691862--47691934	32	2.2	33	90	2	112	23	20	26	30	1.99
47706620--47706827	40	5.2	39	85	1	236	25	26	22	25	2.00
47706620--47706827	80	2.6	80	85	1	265	25	26	22	25	2.00
47714626--47714833	40	5.2	39	85	1	227	25	25	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47714626--47714833	80	2.6	80	84	1	256	25	25	22	26	2.00
47721515--47721622	48	2.2	48	90	0	153	29	25	18	26	1.98
47721541--47721655	48	2.4	48	89	0	167	31	26	16	25	1.96
47724913--47725054	40	3.5	40	83	1	124	27	23	26	22	1.99
47724952--47725080	40	3.2	39	84	6	152	24	22	27	25	2.00
47733757--47733804	2	23.5	2	91	4	78	50	2	0	47	1.12
47734098--47734224	58	2.2	58	78	4	141	31	16	23	28	1.96
47735135--47735174	19	2.1	19	95	0	71	27	5	22	45	1.73
47741655--47741684	14	2.1	14	93	0	51	33	0	0	66	0.92
47749548--47749737	40	4.8	40	87	3	242	23	28	24	23	2.00
47749548--47749740	79	2.4	80	84	5	248	23	27	24	23	2.00
47754676--47754821	43	3.4	43	77	5	143	28	20	23	26	1.99
47759425--47759596	67	2.6	66	81	7	170	31	16	29	22	1.96
47759449--47759632	67	2.8	64	78	8	203	28	16	30	23	1.96
47763834--47764005	67	2.6	66	81	7	170	31	16	29	22	1.96
47763858--47764041	67	2.8	64	78	8	203	28	16	30	23	1.96
47770059--47770273	47	4.7	46	75	14	176	25	18	30	25	1.98
47770015--47770324	94	3.3	93	81	5	333	25	19	30	23	1.98
47773134--47773301	40	4.2	40	83	0	203	25	22	27	25	1.99
47773491--47773556	24	2.8	24	86	4	80	36	0	27	36	1.57
47773515--47773564	24	2.1	24	100	0	100	38	0	20	42	1.52
47775305--47775337	15	2.2	15	100	0	66	12	21	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47778649--47778745	48	2.0	48	100	0	194	27	28	12	30	1.93
47780837--47780930	48	2.0	48	95	0	170	37	21	17	24	1.94
47787251--47787308	29	2.0	30	83	10	75	32	10	6	50	1.63
47787329--47787372	18	2.4	17	78	14	52	56	2	0	40	1.11
47787469--47787546	40	2.0	40	89	0	120	44	16	1	37	1.56
47793828--47793883	27	2.1	27	100	0	112	37	35	14	12	1.84
47794062--47794163	29	3.5	29	90	0	123	26	31	15	26	1.96
47801800--47801900	29	3.5	29	90	1	141	26	31	15	25	1.96
47807541--47807764	48	4.8	48	75	7	208	25	20	25	28	1.99
47811560--47811588	14	2.1	14	100	0	58	27	27	13	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425