genome.fa.s8.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  122  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36206388--36206636	27	9.1	27	78	6	137	33	8	19	38	1.81
36206591--36206959	81	4.6	81	88	3	480	40	7	23	27	1.82
36206591--36206959	27	13.7	27	83	6	376	40	7	23	27	1.82
36209592--36209708	31	3.5	35	89	9	133	22	23	17	36	1.94
36209615--36209708	31	3.0	31	98	0	179	23	22	15	38	1.93
36209901--36210043	24	6.0	24	91	4	209	26	22	22	28	1.99
36209901--36210042	47	3.0	48	90	5	207	26	22	22	28	1.99
36209900--36210043	71	2.0	72	89	4	220	26	22	22	29	1.99
36210093--36210152	20	3.0	20	90	0	102	33	20	11	35	1.88
36210195--36210242	25	1.9	25	86	0	69	25	16	25	33	1.96
36211402--36211466	27	2.4	27	84	5	87	20	24	20	35	1.96
36211517--36211735	27	8.0	27	79	2	195	31	8	18	40	1.81
36211525--36211773	27	9.1	27	79	6	146	32	8	20	38	1.81
36211505--36211749	81	3.0	80	74	7	224	31	8	19	40	1.82
36211728--36212083	27	13.2	27	82	6	393	40	7	24	27	1.82
36211728--36212097	81	4.6	81	87	4	473	40	7	24	27	1.82
36215141--36215242	28	3.5	29	81	6	109	28	27	14	29	1.95
36222589--36222708	6	19.3	6	67	21	61	50	13	16	20	1.78
36222600--36222708	31	3.5	31	88	3	121	50	12	16	20	1.77
36224192--36224399	40	5.2	39	84	1	209	25	25	22	26	2.00
36224192--36224397	80	2.6	81	84	3	247	24	26	22	26	2.00
36231081--36231252	93	1.8	93	96	0	317	27	30	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36231073--36231248	46	3.8	46	81	10	232	28	29	21	20	1.98
36233629--36233717	30	3.0	30	80	8	101	57	15	16	10	1.65
36233629--36233708	15	5.4	15	80	7	92	58	13	17	10	1.62
36233640--36233717	15	5.2	15	78	9	79	56	15	16	11	1.67
36236669--36236840	93	1.8	93	96	0	317	27	30	22	20	1.98
36236661--36236836	46	3.8	46	81	10	232	28	29	21	20	1.98
36248072--36248119	25	1.9	25	91	0	78	35	25	14	25	1.94
36248163--36248218	20	2.8	20	94	0	94	37	12	17	32	1.88
36248272--36248461	23	8.0	23	88	6	247	31	18	21	28	1.97
36248272--36248447	47	3.7	47	88	6	248	31	18	21	28	1.97
36248654--36248717	31	2.1	31	88	2	94	37	15	21	25	1.93
36252031--36252064	16	2.2	16	89	5	52	26	8	14	50	1.72
36256709--36256734	12	2.2	12	100	0	52	34	0	50	15	1.45
36256799--36256841	21	2.1	20	83	12	52	18	0	44	37	1.50
36257862--36258148	27	10.7	27	88	1	371	30	17	15	36	1.91
36257883--36258139	133	1.9	133	91	1	417	28	17	15	37	1.91
36258141--36258230	27	3.3	26	89	10	137	42	18	17	21	1.90
36258141--36258257	54	2.2	54	84	9	150	41	17	17	22	1.90
36258565--36258623	18	3.3	18	76	9	66	23	18	16	40	1.91
36261191--36261353	39	4.2	39	92	0	254	24	31	20	23	1.98
36268315--36268345	15	2.1	15	93	0	53	38	45	0	16	1.47
36275086--36275119	18	1.9	18	88	5	52	29	17	11	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36277006--36277107	29	3.6	27	78	5	87	29	29	16	24	1.97
36279401--36279513	29	4.0	29	90	3	176	29	32	14	23	1.94
36279401--36279512	57	2.0	57	91	3	181	28	33	14	24	1.94
36287449--36287518	27	2.6	27	97	2	131	31	27	12	28	1.93
36295364--36295433	27	2.6	27	97	2	131	31	27	12	28	1.93
36297826--36298032	40	5.2	39	76	5	164	26	25	21	27	2.00
36297826--36298031	80	2.6	81	81	3	229	25	25	21	27	2.00
36305793--36305997	40	5.2	39	77	7	173	24	25	22	26	2.00
36305813--36305996	40	4.6	39	82	8	183	23	25	22	28	1.99
36305808--36305996	79	2.4	81	83	5	224	23	25	23	28	2.00
36313427--36313453	12	2.2	12	100	0	54	33	14	0	51	1.43
36314883--36314996	43	2.7	44	78	8	119	30	21	20	28	1.98
36323363--36323395	16	1.9	18	88	11	52	48	12	15	24	1.78
36323923--36324141	45	5.0	44	85	5	257	24	26	22	26	2.00
36323923--36324141	88	2.5	88	85	6	284	24	26	22	26	2.00
36324949--36325089	46	3.0	46	94	1	246	43	14	11	29	1.81
36327336--36327451	55	2.1	55	80	0	124	20	30	22	26	1.98
36338000--36338145	40	3.7	40	88	1	186	25	28	21	23	1.99
36345810--36345973	40	4.1	40	87	0	211	26	29	21	21	1.99
36353638--36353801	40	4.1	40	82	4	172	26	27	21	23	1.99
36363699--36363804	55	1.9	55	80	0	122	19	29	25	25	1.99
36366569--36366640	37	1.9	37	94	0	126	27	30	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36366786--36366924	52	2.8	49	86	8	201	30	25	7	35	1.83
36366894--36367087	47	4.1	47	89	0	280	27	28	10	32	1.90
36371220--36371340	40	3.0	40	90	0	188	27	28	20	23	1.99
36371528--36371773	40	6.2	40	97	0	465	25	28	21	24	1.99
36373043--36373151	37	2.9	37	95	0	191	26	31	19	22	1.98
36373297--36373435	52	2.8	49	86	8	201	30	25	7	35	1.84
36373405--36373645	47	5.1	47	92	0	383	26	29	11	33	1.91
36373498--36373616	22	5.1	22	63	25	66	24	28	13	33	1.93
36373358--36373645	94	3.1	94	88	3	375	27	28	10	33	1.90
36380864--36381028	56	2.9	56	87	1	242	29	15	23	32	1.95
36382044--36382089	19	2.5	19	86	6	60	47	0	8	43	1.34
36384830--36384892	31	2.0	32	84	9	85	26	20	25	26	1.99
36389214--36389247	10	3.4	10	87	0	50	14	23	23	38	1.92
36389210--36389247	20	1.9	20	88	0	58	15	23	21	39	1.92
36389244--36389289	21	2.2	21	88	0	65	28	23	13	34	1.92
36391389--36391422	12	2.8	12	100	0	68	23	17	8	50	1.74
36391876--36391912	12	3.1	12	88	0	56	59	2	24	13	1.47
36395072--36395339	46	5.7	47	75	15	218	26	19	30	23	1.98
36397090--36397146	10	5.7	10	82	0	60	19	29	14	36	1.91
36397093--36397145	20	2.7	20	87	0	70	16	30	13	39	1.87
36398734--36398820	42	2.1	42	97	0	165	24	24	10	41	1.86
36410154--36410536	50	7.9	50	75	9	319	27	19	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36410180--36410536	95	3.7	95	84	3	414	26	19	29	23	1.99
36410647--36410684	16	2.4	16	100	0	76	42	15	0	42	1.47
36412255--36412284	16	1.9	16	93	6	53	33	23	0	43	1.54
36415296--36415332	8	4.6	8	100	0	74	37	0	0	62	0.96
36415301--36415386	5	16.6	5	76	15	68	39	0	1	59	1.05
36416662--36416718	15	3.9	15	90	2	89	36	0	12	50	1.40
36420937--36420985	25	2.0	25	87	0	71	32	24	16	26	1.96
36421020--36421086	20	3.3	20	89	0	107	32	11	22	32	1.90
36421136--36421231	47	2.1	47	94	2	167	28	19	20	31	1.97
36421135--36421238	23	4.4	24	92	3	167	28	19	22	29	1.98
36421445--36421505	31	2.0	31	93	0	104	32	16	26	24	1.96
36421978--36422010	16	2.1	16	100	0	66	6	6	51	36	1.51
36425096--36425250	43	3.6	42	75	8	145	29	14	23	32	1.94
36428657--36428781	62	2.0	62	92	0	205	21	16	23	38	1.93
36437898--36437934	2	18.5	2	94	0	65	0	45	0	54	1.00
36440302--36440343	22	2.0	21	86	13	59	9	11	4	73	1.22
36440312--36440350	20	2.0	20	85	10	53	12	10	7	69	1.37
36441803--36441850	21	2.3	21	92	3	80	29	4	6	60	1.40
36441799--36441853	21	2.5	22	85	11	78	29	3	5	61	1.35
36445767--36445889	44	2.8	44	83	4	142	19	17	30	32	1.95
36448564--36448630	33	2.1	33	94	2	118	32	37	4	25	1.76
36448847--36448873	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36449521--36449576	27	2.1	27	89	0	85	42	1	17	37	1.60
36450178--36450231	2	27.5	2	88	3	83	51	1	0	46	1.11
36456644--36456683	3	13.3	3	94	0	71	32	2	0	65	1.06
36463676--36463703	14	2.0	14	100	0	56	42	7	14	35	1.73
36466237--36466419	40	4.6	40	85	4	192	26	26	20	26	1.99
36469762--36469836	37	2.0	37	92	0	123	29	9	10	50	1.68
36471659--36471736	33	2.4	33	80	4	86	14	14	21	50	1.78
36471713--36471778	34	1.9	35	90	3	107	16	15	18	50	1.79
36471719--36471790	34	2.1	35	86	2	101	16	19	16	47	1.83
36473891--36473915	13	1.9	13	100	0	50	16	24	40	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425