Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  153  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46544747--46544790
19
2.4
18
85
7
54
40
9
0
50
1.34
46547151--46547219
28
2.5
28
92
2
113
20
10
27
42
1.84
46550765--46551000
59
4.0
59
91
2
352
30
30
16
22
1.96
46559950--46559974
11
2.3
11
100
0
50
32
0
24
44
1.54
46563558--46563657
51
2.0
51
91
0
164
45
17
12
26
1.83
46566665--46566804
57
2.4
58
85
5
187
30
18
18
32
1.95
46569470--46569609
27
5.1
27
78
1
145
36
19
17
27
1.94
46571031--46571069
12
3.2
12
85
0
51
25
43
0
30
1.55
46577184--46577305
55
2.2
55
79
1
129
31
26
27
14
1.95
46577742--46577789
23
2.0
24
88
4
71
27
25
10
37
1.88
46588282--46588335
22
2.5
21
80
11
65
27
18
33
20
1.96
46591441--46591525
29
2.9
28
74
8
80
54
8
20
17
1.68
46591499--46591570
29
2.5
30
84
8
96
51
9
13
25
1.72
46591421--46591575
58
2.7
57
79
8
152
52
7
19
20
1.69
46592955--46592994
17
2.4
17
87
8
55
42
17
0
40
1.49
46595130--46595174
23
2.0
23
95
0
81
44
17
17
20
1.87
46596735--46596864
65
2.0
65
96
0
242
16
8
25
49
1.74
46597351--46597388
19
2.0
19
89
0
58
34
10
10
44
1.73
46599137--46599169
11
3.0
11
100
0
66
36
0
0
63
0.95
46604514--46604552
20
2.0
20
94
0
69
25
33
28
12
1.93
46608142--46608339
27
7.3
27
84
2
236
29
25
7
38
1.82
46608142--46608335
54
3.6
54
88
1
264
29
25
6
38
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46608142--46608339
81
2.4
81
87
0
270
29
25
7
38
1.82
46608338--46608518
27
6.7
27
81
4
177
42
18
9
28
1.83
46608637--46608701
27
2.4
27
79
5
69
35
16
24
23
1.95
46609511--46609580
25
2.8
24
91
4
104
24
27
24
24
2.00
46609510--46609593
25
3.4
24
83
8
98
27
23
23
25
2.00
46609728--46609819
42
2.2
42
94
0
157
31
14
21
32
1.93
46609843--46609926
31
2.7
30
85
1
114
28
15
26
29
1.96
46615417--46615457
18
2.3
19
91
8
68
21
41
21
14
1.89
46618022--46618091
22
3.2
22
83
4
79
25
18
10
45
1.80
46623376--46623409
18
1.9
17
94
5
59
41
5
26
26
1.78
46625162--46625333
59
2.9
59
96
0
317
19
16
33
30
1.95
46633830--46633967
39
3.6
39
87
1
197
13
26
22
38
1.90
46638581--46638699
39
3.1
39
90
1
186
13
24
21
40
1.89
46638581--46638718
39
3.6
38
86
2
177
13
23
22
39
1.90
46639799--46639920
43
2.9
42
86
2
163
28
27
14
29
1.95
46641169--46641453
47
6.1
47
94
0
462
27
27
10
34
1.90
46653179--46653236
30
1.9
30
85
0
80
41
5
22
31
1.76
46653530--46653566
19
2.0
19
89
5
58
43
0
10
45
1.39
46655452--46655672
40
5.6
40
84
4
279
24
22
26
26
2.00
46655900--46655941
22
1.9
22
85
9
59
33
9
14
42
1.78
46663680--46663898
40
5.6
40
84
8
281
24
21
26
26
2.00
46663680--46663898
79
2.8
78
85
8
291
24
21
26
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46664532--46664697
40
4.2
39
81
5
176
22
25
22
28
1.99
46664547--46664697
79
1.9
79
84
8
200
22
25
23
28
1.99
46672612--46672758
37
3.8
37
81
7
134
23
27
23
25
2.00
46672580--46672720
40
3.7
38
82
8
135
24
29
22
24
1.99
46674743--46674829
25
3.5
25
75
4
70
33
18
21
26
1.96
46678862--46678920
9
6.6
9
88
0
82
44
22
8
25
1.81
46678942--46678981
6
6.3
6
83
11
53
17
0
2
80
0.83
46678942--46678981
13
3.1
13
79
13
55
17
0
2
80
0.83
46680823--46680943
45
2.7
44
83
3
170
34
28
14
22
1.94
46682984--46683067
10
8.7
10
69
17
52
52
1
0
46
1.08
46682917--46683075
57
2.8
55
84
7
178
55
1
1
41
1.15
46683001--46683057
23
2.4
24
88
8
82
52
1
0
45
1.11
46683010--46683047
16
2.4
16
82
8
51
55
2
0
42
1.14
46683024--46683114
34
2.7
33
83
5
119
53
2
0
43
1.12
46683075--46683130
25
2.2
25
87
0
76
55
3
0
41
1.17
46682994--46683128
58
2.3
58
84
2
164
56
2
0
41
1.12
46683107--46683169
29
2.2
28
86
5
90
53
1
3
41
1.26
46690925--46690961
18
2.0
20
89
10
60
54
10
0
35
1.36
46700200--46700290
41
2.2
43
84
4
114
26
15
24
34
1.95
46704126--46704230
27
3.9
27
79
2
122
26
16
19
38
1.92
46705096--46705128
17
1.9
17
93
0
57
54
3
18
24
1.57
46706330--46706407
39
2.0
39
100
0
156
38
25
0
35
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46708211--46708438
48
4.9
48
79
7
261
27
25
21
26
1.99
46708211--46708438
91
2.4
94
84
5
275
27
25
21
26
1.99
46714846--46714878
2
16.5
2
100
0
66
51
0
0
48
1.00
46717535--46717743
46
4.5
45
78
8
181
22
28
20
29
1.98
46717576--46717744
94
1.8
92
84
7
234
21
27
20
30
1.98
46717475--46717754
46
6.0
47
73
14
163
23
27
20
28
1.99
46719839--46719994
43
3.6
43
76
7
147
31
26
17
24
1.97
46723965--46724087
59
2.1
60
92
3
205
42
4
11
42
1.59
46724685--46724723
16
2.4
17
83
12
55
51
0
0
48
1.00
46725056--46725099
2
22.0
2
100
0
88
50
0
0
50
1.00
46727057--46727189
58
2.2
59
84
9
164
44
0
5
50
1.24
46727575--46727599
12
2.1
12
100
0
50
64
0
0
36
0.94
46730025--46730085
27
2.3
27
82
0
77
32
26
14
26
1.95
46731649--46731846
66
2.9
66
79
11
170
20
27
18
33
1.96
46739155--46739315
71
2.3
71
87
2
243
17
27
19
35
1.94
46745511--46745601
44
2.1
44
100
0
182
32
25
10
30
1.90
46749964--46750124
43
3.7
43
77
11
168
32
27
16
23
1.96
46749953--46750110
86
1.8
85
85
6
221
31
27
17
23
1.96
46752957--46752992
6
5.8
6
96
3
63
33
0
0
66
0.92
46753152--46753330
82
2.2
82
84
1
241
28
15
12
44
1.82
46757698--46757829
55
2.4
55
82
8
155
31
26
28
14
1.95
46760954--46761019
33
2.0
33
100
0
132
21
15
18
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46764835--46764887
26
2.0
26
92
0
88
45
9
5
39
1.60
46766583--46766612
15
2.0
15
100
0
60
33
6
13
46
1.69
46767849--46768106
49
5.3
49
96
0
457
30
29
7
32
1.85
46769891--46770039
80
1.9
80
81
2
183
22
30
24
22
1.99
46769932--46770039
40
2.7
38
85
8
128
21
29
25
23
1.99
46776279--46776399
52
2.4
49
76
16
129
33
4
6
56
1.44
46776558--46776591
17
2.0
17
100
0
68
64
11
5
17
1.45
46776744--46776802
31
2.0
29
81
15
68
62
1
1
33
1.15
46776932--46776973
21
1.9
21
85
9
57
45
0
2
52
1.13
46777884--46777915
17
1.9
17
93
6
57
31
0
0
68
0.90
46777825--46777907
36
2.4
35
74
8
80
33
3
2
60
1.27
46780662--46780695
17
2.0
17
100
0
68
41
11
5
41
1.66
46781646--46781737
44
2.1
44
83
0
112
46
14
16
22
1.82
46781646--46781740
22
4.3
22
74
2
66
46
14
16
22
1.84
46782345--46782527
63
2.9
63
81
2
190
30
26
17
25
1.97
46791653--46791722
27
2.5
28
86
2
97
32
25
14
27
1.94
46791730--46791836
42
2.5
42
95
0
187
23
33
14
28
1.93
46799059--46799158
29
3.5
28
73
13
80
27
33
18
22
1.96
46807874--46807928
11
5.5
10
79
12
60
36
9
18
36
1.82
46807976--46808067
25
3.7
25
88
0
139
27
26
22
23
2.00
46808290--46808373
31
2.7
31
90
1
134
34
17
23
23
1.96
46816434--46816559
47
2.7
44
80
11
137
28
16
29
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46816482--46816795
46
6.7
47
70
14
168
26
18
30
24
1.98
46821467--46821497
2
16.0
2
93
6
55
48
0
0
51
1.00
46822455--46822604
38
3.9
38
88
0
192
24
22
26
27
2.00
46822608--46823019
171
2.4
172
91
0
664
12
25
31
30
1.92
46822609--46823019
214
1.9
215
92
0
689
12
25
31
30
1.92
46822608--46823019
43
9.6
43
92
0
673
12
25
31
30
1.92
46825292--46825405
42
2.7
43
82
4
133
29
21
23
25
1.99
46832371--46832451
42
1.9
42
92
0
135
30
13
18
37
1.90
46839151--46839452
41
7.3
41
90
3
446
19
19
24
36
1.95
46842054--46842175
48
2.7
43
73
19
115
25
25
22
26
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425