genome.fa.s8.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  159  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48368301--48368446	54	2.7	54	83	2	177	36	6	22	33	1.81
48368212--48368361	81	1.9	81	80	5	178	29	6	23	40	1.80
48370264--48370314	21	2.4	21	96	0	93	11	31	27	29	1.92
48382087--48382206	46	2.6	45	84	9	154	30	20	28	21	1.98
48382273--48382399	49	2.6	49	81	6	152	31	22	24	22	1.98
48387563--48387668	48	2.2	48	93	0	176	33	5	27	33	1.80
48387802--48387873	37	1.9	37	88	0	108	25	20	31	22	1.98
48389521--48389662	43	3.3	43	97	1	261	11	23	32	31	1.91
48389648--48389677	15	2.0	15	100	0	60	20	13	26	40	1.89
48389606--48389720	56	2.0	57	96	3	214	13	22	30	33	1.93
48389662--48389743	43	1.9	43	94	0	146	13	24	30	31	1.93
48389563--48389743	99	1.8	99	97	0	344	13	23	30	32	1.93
48389662--48389755	43	2.2	43	90	0	143	14	22	30	31	1.94
48389935--48390017	28	2.9	28	75	7	96	24	20	30	25	1.99
48393408--48393513	48	2.2	48	93	0	176	33	5	27	33	1.80
48393646--48393717	37	1.9	37	91	0	117	22	19	34	23	1.96
48395323--48395376	25	2.3	23	74	6	54	50	3	0	46	1.19
48402184--48402287	42	2.5	43	81	6	124	32	19	18	29	1.95
48403737--48404027	57	5.1	56	76	6	271	33	10	18	37	1.86
48403738--48404027	114	2.5	114	92	0	472	33	11	18	37	1.86
48404674--48404721	22	2.2	22	88	0	69	25	22	37	14	1.92
48405896--48406091	46	4.2	45	74	15	141	22	30	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48407440--48407535	27	3.5	27	77	16	99	36	20	22	19	1.95
48416659--48416876	40	5.5	40	87	4	282	22	23	29	25	1.99
48424896--48425153	40	6.5	40	89	2	351	22	23	28	25	2.00
48437292--48437459	40	4.2	40	80	1	167	23	27	23	25	2.00
48437308--48437457	80	1.9	80	83	5	196	22	27	24	26	2.00
48450619--48450702	28	3.2	28	61	22	72	30	22	21	25	1.98
48450504--48450781	51	5.6	48	84	7	292	30	27	18	23	1.98
48457168--48457217	24	2.1	24	100	0	100	42	20	0	38	1.52
48457168--48457241	24	3.1	24	88	3	87	37	24	0	37	1.56
48457431--48457638	40	5.2	39	84	2	238	25	28	21	24	1.99
48462599--48462689	40	2.3	40	83	7	105	27	16	28	27	1.97
48467193--48467377	40	4.7	40	87	6	218	25	21	26	26	1.99
48467206--48467354	79	1.9	80	86	6	214	28	20	24	26	1.99
48467227--48467400	79	2.2	79	81	8	194	28	20	24	26	1.99
48476091--48476196	52	2.0	53	98	1	205	31	13	23	32	1.93
48478618--48478728	47	2.4	47	89	3	161	27	27	9	36	1.87
48478732--48478867	46	3.0	46	97	0	254	31	27	7	33	1.84
48481569--48481673	40	2.6	40	80	8	115	24	24	23	26	2.00
48482333--48482639	40	7.7	40	92	1	483	25	28	21	24	1.99
48482317--48482639	120	2.7	120	93	0	551	25	28	21	24	1.99
48485193--48485303	47	2.4	47	89	3	161	27	27	9	36	1.87
48485307--48485488	46	4.0	46	97	0	337	31	27	7	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48487189--48487220	15	2.1	15	100	0	64	18	34	21	25	1.96
48489217--48489652	50	8.8	50	74	9	333	26	18	25	30	1.98
48489263--48489649	142	2.6	146	86	5	516	25	18	25	30	1.98
48489410--48489591	101	1.8	101	88	0	283	26	18	24	30	1.98
48490211--48490568	180	2.0	180	87	2	522	38	9	19	32	1.84
48497000--48497034	13	2.5	14	90	9	54	31	11	14	42	1.81
48515378--48515475	48	2.0	48	96	0	178	25	22	16	35	1.94
48516305--48516344	20	2.0	20	85	5	53	27	2	7	62	1.35
48522623--48522667	23	2.0	23	86	0	63	42	24	20	13	1.87
48527840--48527949	26	4.2	26	94	2	177	34	4	24	36	1.76
48529568--48529707	27	5.2	27	87	5	176	18	24	22	35	1.96
48535822--48535889	32	2.1	32	97	0	127	33	1	27	36	1.66
48538450--48538506	30	1.9	30	85	7	80	28	19	7	45	1.76
48545224--48545256	14	2.3	15	89	5	50	24	15	6	54	1.63
48546700--48546743	22	2.0	22	100	0	88	36	0	13	50	1.42
48548624--48548654	15	2.1	15	100	0	62	45	12	22	19	1.84
48549651--48549710	27	2.2	27	93	0	102	33	6	30	30	1.83
48549651--48549732	27	3.0	27	84	7	87	31	10	30	26	1.91
48553046--48553078	16	2.0	16	94	5	57	84	0	15	0	0.61
48558500--48558717	40	5.5	40	90	2	325	23	22	28	25	1.99
48560379--48560490	27	4.2	26	86	10	145	35	23	25	16	1.94
48560379--48560490	54	2.1	54	88	6	165	35	23	25	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48566974--48567085	27	4.1	27	82	10	131	37	22	23	16	1.94
48566974--48567085	54	2.1	54	89	3	172	37	22	23	16	1.94
48568865--48569050	40	4.7	40	86	5	227	25	22	26	25	2.00
48568865--48569073	80	2.6	80	78	13	227	26	22	26	24	2.00
48576834--48577019	40	4.7	40	86	5	227	25	22	26	25	2.00
48576834--48577052	80	2.8	80	79	12	238	26	22	26	24	2.00
48585131--48585247	3	39.7	3	90	1	166	29	2	1	65	1.15
48586715--48586769	10	5.1	12	88	8	59	16	1	0	81	0.77
48586726--48586779	5	10.8	5	95	0	99	18	1	0	79	0.82
48596188--48596242	27	2.0	27	100	0	110	36	18	7	38	1.78
48596433--48596756	48	6.8	48	89	0	434	27	31	16	24	1.97
48600955--48601018	32	2.0	32	100	0	128	40	18	15	25	1.90
48604313--48604675	48	7.6	48	85	3	309	27	28	15	28	1.96
48604350--48604686	144	2.3	144	88	1	496	27	29	15	27	1.96
48604350--48604686	48	7.0	48	86	1	433	27	29	15	27	1.96
48610514--48610623	26	4.2	26	97	0	184	33	5	24	36	1.79
48612057--48612132	26	2.8	26	88	4	98	34	21	13	31	1.91
48612235--48612361	27	4.7	27	89	1	182	18	25	22	33	1.97
48612436--48612475	19	2.0	22	85	14	59	17	2	47	32	1.61
48614666--48614718	25	2.1	25	100	0	106	67	3	0	28	1.07
48619790--48619818	2	14.5	2	100	0	58	0	48	0	51	1.00
48622164--48622312	60	2.5	59	80	9	151	25	24	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48622305--48622360	19	2.9	19	81	2	58	33	28	16	21	1.95
48625497--48625580	40	2.1	40	100	0	168	38	15	14	32	1.87
48633085--48633130	23	2.0	23	83	4	58	30	13	4	52	1.59
48633430--48633464	17	2.1	17	88	0	52	60	0	0	40	0.97
48634263--48634290	8	3.5	8	100	0	56	14	0	0	85	0.59
48639457--48639517	31	2.0	31	83	0	77	39	19	19	21	1.93
48664563--48664664	51	2.0	51	98	0	195	18	15	24	41	1.90
48668662--48668953	40	7.2	40	91	3	451	22	28	23	25	1.99
48675818--48675864	19	2.3	20	82	10	60	36	0	14	48	1.44
48676214--48676402	101	1.9	101	95	0	342	26	19	24	29	1.98
48676213--48676406	50	3.9	50	79	6	230	26	19	25	28	1.98
48678537--48678651	49	2.3	49	96	0	212	29	9	31	29	1.89
48678628--48678672	21	2.1	21	95	0	81	28	11	26	33	1.91
48678579--48678721	70	2.0	70	95	0	259	28	9	30	31	1.88
48678537--48678770	119	2.0	119	94	0	414	28	8	32	30	1.88
48678649--48678772	49	2.5	49	98	0	239	27	8	33	30	1.87
48678874--48678995	37	3.3	37	97	0	226	25	19	33	21	1.97
48680556--48680587	16	2.0	16	93	0	55	46	0	18	34	1.49
48682882--48682924	22	2.0	20	82	8	50	60	0	6	32	1.23
48685275--48685425	44	3.4	43	76	10	144	19	23	21	35	1.96
48685266--48685469	88	2.3	87	85	0	255	20	22	22	35	1.96
48684961--48685471	218	2.3	217	76	9	529	20	20	22	36	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48690185--48690360	46	3.8	44	77	10	158	22	18	28	30	1.98
48690181--48690352	93	1.8	93	87	2	256	22	19	29	29	1.98
48690554--48690587	16	2.1	16	100	0	68	52	23	5	17	1.66
48699966--48700008	22	2.0	20	82	8	50	60	0	6	32	1.23
48702472--48702513	21	2.0	21	85	0	57	38	7	14	40	1.73
48702708--48702751	22	1.9	24	86	9	65	40	13	2	43	1.57
48706101--48706305	9	24.1	9	68	23	99	24	1	17	55	1.52
48706098--48706264	52	3.3	49	79	10	142	25	1	17	55	1.51
48706098--48706377	13	20.6	13	68	24	120	24	2	17	55	1.54
48706105--48706317	77	2.8	77	79	16	223	25	1	16	55	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425