genome.fa.s8.2.7.7.80.10.50.1000.303.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  303  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94156333--94156376	3	14.7	3	100	0	88	68	0	0	31	0.90
94157614--94157677	17	3.8	17	74	12	51	32	3	1	62	1.20
94157645--94157695	18	2.7	19	82	11	61	29	0	1	68	1.00
94157645--94157695	19	2.7	18	87	6	66	29	0	1	68	1.00
94157797--94157861	31	2.1	32	82	8	80	55	3	4	36	1.36
94159080--94159146	33	2.0	33	97	0	125	14	20	17	46	1.84
94159203--94159244	21	2.0	21	100	0	84	38	9	9	42	1.70
94161121--94161147	5	5.4	5	100	0	54	18	0	0	81	0.69
94162918--94162951	15	2.3	15	100	0	68	11	11	5	70	1.32
94163063--94163108	15	2.9	15	90	6	65	26	6	0	67	1.15
94163075--94163141	21	3.0	23	76	21	72	29	5	0	64	1.17
94163245--94163306	25	2.5	24	75	17	63	32	9	1	56	1.41
94177803--94177976	45	3.8	45	76	10	190	28	29	20	21	1.98
94177811--94177981	93	1.8	92	92	1	288	27	30	21	21	1.98
94180356--94180444	30	3.0	30	79	11	94	56	15	17	10	1.67
94180356--94180438	15	5.6	14	73	10	58	55	16	18	9	1.68
94180367--94180444	15	5.2	15	75	9	70	55	15	17	11	1.69
94183337--94183508	93	1.8	93	93	0	299	27	30	21	20	1.98
94183329--94183504	46	3.8	46	81	4	219	28	30	21	20	1.98
94183380--94183523	46	3.1	45	73	15	132	28	29	20	20	1.98
94187043--94187244	27	7.4	27	73	12	135	39	17	9	33	1.82
94187047--94187244	54	3.6	54	73	10	179	39	18	9	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94187282--94187359	27	2.9	27	77	11	88	37	21	19	21	1.95
94188511--94188558	25	1.9	25	86	0	69	33	25	16	25	1.96
94188601--94188661	20	3.0	20	92	0	104	34	11	21	32	1.89
94188711--94188853	24	6.0	24	91	4	209	28	22	22	26	1.99
94188711--94188853	47	3.0	47	90	5	207	28	22	22	26	1.99
94188711--94188854	71	2.0	72	89	4	220	29	22	22	26	1.99
94189044--94189138	31	3.1	31	96	0	172	40	15	21	23	1.91
94191684--94191772	27	3.3	26	81	6	70	39	16	8	34	1.80
94191694--94191890	54	3.6	53	74	8	182	39	17	10	32	1.84
94191699--94191890	27	7.1	26	75	10	136	39	17	10	32	1.84
94191930--94192002	27	2.8	26	79	8	78	35	21	20	21	1.96
94193241--94193301	20	3.0	20	92	0	104	34	11	21	32	1.89
94193351--94193492	24	6.0	24	90	5	200	28	21	22	26	1.99
94193351--94193492	46	3.0	47	88	7	198	28	21	22	26	1.99
94193683--94193777	31	3.1	31	95	0	172	41	15	20	23	1.90
94202845--94202872	2	14.0	2	100	0	56	50	0	0	50	1.00
94203665--94203689	5	5.0	5	100	0	50	80	0	0	20	0.72
94213399--94213492	40	2.4	40	78	3	102	36	37	12	13	1.84
94213910--94213949	17	2.3	17	86	4	53	17	42	27	12	1.85
94222759--94222802	22	2.0	22	100	0	88	22	9	27	40	1.84
94223544--94223615	27	2.7	27	86	4	101	36	13	29	20	1.92
94226552--94226621	27	2.5	28	95	2	124	28	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94226552--94226633	27	3.0	27	85	8	78	29	15	24	30	1.96
94234581--94234650	27	2.5	28	95	2	124	28	14	27	30	1.95
94234581--94234662	27	3.0	27	85	8	78	29	15	24	30	1.96
94239160--94239572	152	2.7	151	84	6	502	43	5	9	41	1.60
94240100--94240146	24	1.9	24	83	12	60	31	6	6	55	1.51
94242951--94243030	41	2.0	41	82	0	97	28	21	31	18	1.97
94245317--94245347	13	2.4	13	94	0	53	74	6	3	16	1.16
94251016--94251046	15	2.1	15	100	0	62	35	19	25	19	1.95
94256032--94256056	13	1.9	13	100	0	50	56	20	0	24	1.43
94257911--94257959	24	2.0	24	96	0	89	44	20	18	16	1.86
94264885--94264941	24	2.4	24	87	0	87	40	15	24	19	1.90
94273126--94273285	42	3.8	42	83	1	176	30	22	14	33	1.94
94274387--94274439	26	2.1	24	82	6	61	60	5	1	32	1.31
94279287--94279326	21	2.0	20	90	5	62	35	0	22	42	1.54
94279292--94279334	21	2.1	21	83	12	54	32	2	20	44	1.65
94283053--94283119	1	67.0	1	72	0	53	86	5	2	4	0.77
94283053--94283117	17	4.3	16	80	12	59	86	6	3	4	0.79
94283519--94283895	42	9.0	42	83	2	454	22	19	21	36	1.95
94283541--94283863	166	1.9	166	85	1	441	22	18	21	36	1.95
94283519--94283895	208	1.8	208	87	2	560	22	19	21	36	1.95
94284675--94285435	154	5.0	152	82	7	828	42	3	10	43	1.57
94285931--94285977	24	1.9	24	83	12	60	31	6	6	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94286001--94286035	10	3.4	10	84	7	52	20	5	0	74	1.02
94289635--94289773	37	3.8	37	96	0	244	24	31	19	24	1.98
94289914--94290194	48	5.9	48	97	0	508	31	28	5	34	1.81
94296268--94296396	25	5.4	24	83	9	133	33	19	19	27	1.96
94303837--94304353	237	2.2	235	91	3	840	45	5	3	44	1.45
94303833--94304353	59	8.8	59	91	2	760	45	6	3	44	1.45
94311461--94311584	54	2.3	53	83	6	144	39	19	10	30	1.85
94311461--94311627	27	6.2	27	77	4	124	38	18	12	30	1.88
94311448--94311613	81	2.1	80	79	3	172	37	21	10	30	1.87
94331233--94331450	46	4.7	46	81	12	266	22	20	28	28	1.98
94333865--94334285	27	15.7	27	83	2	420	29	11	21	38	1.88
94334598--94334704	28	3.8	28	94	0	178	28	34	14	22	1.93
94339200--94339248	7	6.9	7	83	4	62	46	36	0	16	1.47
94340504--94340595	20	4.8	20	63	20	54	41	1	3	54	1.24
94340473--94340614	55	2.5	55	79	10	155	44	1	3	50	1.27
94340793--94340842	16	3.1	16	85	0	73	28	30	4	38	1.75
94341263--94341324	32	1.9	32	90	0	97	43	9	1	45	1.46
94343928--94343977	25	2.0	25	100	0	100	44	20	4	32	1.70
94346012--94346055	23	2.0	23	86	8	65	11	6	20	61	1.52
94346579--94346608	16	1.9	16	93	6	53	36	6	6	50	1.55
94349958--94350096	60	2.3	59	82	8	156	27	26	19	26	1.99
94350089--94350144	19	2.9	19	81	2	58	32	23	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94350170--94350211	22	1.9	22	90	0	66	19	54	2	23	1.55
94350744--94350783	8	5.0	8	93	0	71	2	25	22	50	1.62
94354809--94354915	29	3.7	29	96	0	196	28	32	14	24	1.95
94355139--94355182	16	2.8	16	92	0	70	15	25	11	47	1.79
94355145--94355198	24	2.3	23	84	9	65	16	24	11	48	1.79
94361236--94361315	39	2.1	39	100	0	160	33	20	10	36	1.86
94365522--94365640	29	4.2	30	81	10	135	26	31	13	28	1.94
94365524--94365636	58	2.0	57	87	5	165	25	31	14	28	1.94
94365708--94365744	19	2.0	19	89	5	58	18	43	16	21	1.88
94374341--94374560	109	2.0	110	95	0	397	37	14	18	29	1.91
94379189--94379224	2	18.0	2	100	0	72	50	0	0	50	1.00
94380189--94380304	32	3.7	32	68	21	93	49	2	2	45	1.29
94380187--94380390	5	35.2	6	63	25	50	50	2	2	44	1.32
94380191--94380306	58	1.9	61	87	6	175	49	2	2	45	1.29
94380280--94380387	12	9.2	12	70	19	61	52	2	2	41	1.30
94380282--94380390	20	5.9	18	71	21	75	52	2	2	42	1.30
94381136--94381183	22	2.2	21	82	13	62	70	4	2	22	1.15
94383548--94383600	22	2.5	21	87	6	72	58	26	7	7	1.52
94385990--94386161	40	4.3	40	84	5	224	27	27	21	23	1.99
94390242--94390274	17	2.0	17	88	5	50	33	18	0	48	1.48
94390576--94390765	101	1.9	101	88	0	290	27	25	15	31	1.95
94392466--94392490	13	1.9	13	100	0	50	40	12	0	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94393871--94394253	27	14.2	27	84	4	504	26	22	9	40	1.86
94394258--94394453	27	7.3	27	87	0	257	35	18	19	26	1.95
94394433--94394496	27	2.4	27	74	10	67	17	18	26	37	1.93
94394652--94394734	27	3.1	26	84	5	85	20	21	20	37	1.95
94394822--94394880	22	2.7	22	81	0	64	22	23	22	32	1.98
94395045--94395118	27	2.8	27	85	6	89	17	24	21	36	1.95
94395236--94395440	6	33.8	6	80	13	233	18	18	15	48	1.82
94400530--94400571	3	14.0	3	100	0	84	66	0	0	33	0.92
94400570--94400598	3	9.7	3	100	0	58	34	0	31	34	1.58
94405317--94405480	40	4.1	40	77	6	170	25	21	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425