Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  18  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4795260--4795341
42
2.0
42
85
0
110
30
10
21
36
1.88
4800012--4800044
7
4.7
7
88
11
50
0
69
0
30
0.88
4809812--4809837
2
13.0
2
100
0
52
50
0
0
50
1.00
4811484--4811524
20
2.0
20
100
0
82
39
24
17
19
1.92
4813406--4813456
14
3.7
14
75
12
52
49
5
3
41
1.45
4813438--4813470
14
2.4
14
90
5
50
54
0
3
42
1.15
4813750--4813797
22
2.3
21
86
13
64
66
0
4
29
1.10
4813853--4813882
13
2.4
13
94
5
53
73
0
6
20
1.05
4814220--4814279
27
2.1
29
82
14
72
28
1
1
68
1.09
4820643--4820747
40
2.6
41
91
5
171
38
11
25
24
1.89
4824679--4824734
16
3.4
16
76
13
60
12
7
21
58
1.57
4824669--4824733
33
1.9
34
87
3
96
16
7
21
53
1.68
4824978--4825011
13
2.6
13
90
9
52
35
0
0
64
0.94
4825742--4825773
2
16.0
2
93
0
55
46
0
3
50
1.17
4826319--4826375
24
2.4
24
81
0
78
40
15
15
28
1.88
4830776--4830830
27
2.0
27
96
0
101
32
27
3
36
1.74
4831430--4831473
22
2.0
22
100
0
88
63
0
13
22
1.29
4836559--4836614
16
3.5
16
80
4
69
37
5
26
30
1.79
4836596--4836689
44
2.1
46
88
4
138
31
6
26
35
1.82
4836780--4836916
58
2.4
58
80
4
143
48
3
2
45
1.32
4839989--4840053
33
2.0
33
96
0
121
46
10
32
10
1.73
4843739--4843784
16
2.9
16
90
0
65
28
19
6
45
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4848998--4849057
27
2.2
27
96
3
111
35
21
0
43
1.53
4850988--4851065
36
2.2
36
86
4
104
58
3
2
34
1.30
4851236--4851273
20
1.9
20
84
10
51
63
0
2
34
1.09
4851443--4851490
19
2.5
20
79
3
53
37
4
0
58
1.18
4851443--4851491
10
5.0
10
75
20
50
36
4
0
59
1.17
4852716--4852775
26
2.4
24
83
8
75
68
3
0
28
1.05
4852746--4852804
21
2.8
22
85
7
70
69
6
0
23
1.12
4854534--4854610
18
4.3
18
83
3
75
31
11
18
38
1.86
4854534--4854615
36
2.3
36
80
4
94
31
10
19
37
1.87
4855316--4855371
21
2.7
21
80
0
67
21
26
30
21
1.98
4862955--4863006
8
6.8
8
86
8
81
38
1
0
59
1.08
4867057--4867467
46
8.9
46
92
1
646
24
23
13
38
1.91
4869883--4869950
30
2.3
30
82
5
75
27
17
5
48
1.70
4874124--4874193
28
2.5
28
95
0
122
45
12
11
30
1.78
4879348--4879410
32
1.9
33
83
3
83
63
4
7
23
1.41
4880528--4880565
8
4.8
8
93
0
67
71
0
2
26
1.00
4882099--4882139
20
2.1
19
86
13
57
65
0
0
34
0.93
4883129--4883204
34
2.2
34
97
0
143
53
21
5
19
1.64
4886445--4886474
11
2.7
11
94
0
51
86
0
13
0
0.57
4890072--4890108
5
7.4
5
87
0
56
32
0
43
24
1.55
4896515--4896582
30
2.3
30
84
5
84
47
5
19
27
1.72
4898986--4899259
46
6.0
46
93
0
424
39
14
22
23
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4901345--4901374
14
2.1
15
93
6
53
33
0
20
46
1.51
4902497--4902626
43
3.0
43
79
12
142
23
18
27
30
1.97
4906472--4906573
49
2.2
45
85
7
141
28
15
9
46
1.78
4909541--4909573
6
5.5
6
100
0
66
54
30
15
0
1.41
4912825--4913040
46
4.7
46
91
0
315
39
15
23
21
1.91
4912775--4913040
138
2.0
130
87
5
379
39
15
23
21
1.92
4914018--4914052
17
2.1
17
94
0
61
31
8
11
48
1.69
4916687--4916783
49
2.0
49
80
11
110
32
16
12
38
1.86
4916903--4916935
11
3.1
11
86
8
50
6
12
0
81
0.85
4923103--4923147
2
23.0
2
95
4
83
51
0
0
48
1.00
4925545--4925585
13
2.8
15
78
14
50
58
2
0
39
1.11
4925659--4925710
23
2.4
21
87
6
68
48
0
3
48
1.20
4925649--4925710
23
2.8
23
77
18
60
48
0
3
48
1.17
4931889--4932007
43
2.8
41
81
7
148
30
15
26
27
1.96
4932094--4932139
20
2.3
20
84
0
65
32
4
30
32
1.77
4937106--4937213
44
2.4
44
87
3
144
29
23
13
33
1.93
4944492--4944599
44
2.4
44
87
3
144
29
23
13
33
1.93
4945736--4945761
2
13.0
2
100
0
52
50
0
0
50
1.00
4947154--4947261
33
3.3
33
75
7
112
29
12
22
36
1.90
4949939--4950022
42
2.0
42
97
0
159
33
17
21
27
1.96
4952322--4952351
8
3.8
8
90
0
51
70
0
0
30
0.88
4952325--4952356
16
2.0
16
93
0
55
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4952790--4952829
2
20.0
2
100
0
80
50
0
0
50
1.00
4966971--4967013
16
2.7
16
82
7
52
37
16
2
44
1.60
4967045--4967093
2
24.5
2
100
0
98
51
0
0
48
1.00
4968007--4968052
18
2.5
19
86
6
60
8
15
2
73
1.16
4972454--4972494
2
22.0
2
80
14
52
48
0
0
51
1.00
4972673--4972697
8
3.1
8
100
0
50
60
0
0
40
0.97
4974409--4974543
39
3.4
39
75
8
114
23
20
27
28
1.99
4975663--4975702
2
20.0
2
100
0
80
50
0
0
50
1.00
4979863--4979957
40
2.4
38
78
3
100
14
12
35
36
1.85
4985355--4985379
12
2.1
12
100
0
50
60
0
8
32
1.26
4985362--4985483
14
9.2
13
67
24
53
61
4
4
30
1.33
4985420--4985481
25
2.7
22
75
18
54
64
0
3
32
1.09
4985415--4985498
24
3.4
25
82
8
93
61
1
2
34
1.16
4987136--4987717
205
2.8
206
93
1
1001
28
20
18
31
1.96
4999785--4999809
12
2.1
12
100
0
50
60
0
8
32
1.26
4999792--4999913
14
9.2
13
67
24
53
61
4
4
30
1.33
4999850--4999911
25
2.7
22
75
18
54
64
0
3
32
1.09
4999845--4999915
24
2.9
25
85
4
92
63
1
2
32
1.18
4999955--5000019
26
2.5
27
78
9
73
44
1
4
49
1.32
5001324--5001349
2
13.0
2
100
0
52
50
0
0
50
1.00
5002482--5002596
44
2.6
44
85
2
149
35
13
22
27
1.92
5002482--5002615
46
3.0
45
82
4
153
35
14
23
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5003491--5003548
2
29.5
2
86
10
84
48
0
1
50
1.11
5005175--5005201
2
13.5
2
100
0
54
48
0
0
51
1.00
5009483--5009528
19
2.5
19
86
6
60
73
2
15
8
1.16
5017549--5017627
41
1.9
42
82
7
99
55
2
8
32
1.44
5020325--5020411
42
2.1
42
97
0
165
18
28
14
37
1.91
5036216--5036245
13
2.3
13
94
0
51
6
16
0
76
0.99
5038282--5038368
39
2.2
39
97
0
165
11
27
5
55
1.58
5049546--5049582
15
2.6
14
87
8
56
0
18
2
78
0.87
5049613--5049663
20
2.5
20
81
15
61
29
5
1
62
1.29
5050935--5051038
51
2.0
51
96
0
190
32
23
11
32
1.90
5059992--5060059
34
2.0
34
88
5
102
66
0
4
29
1.11
5060338--5060362
2
12.5
2
100
0
50
48
0
0
52
1.00
5060912--5060966
19
3.0
18
79
10
58
45
0
1
52
1.11
5065439--5065492
21
2.5
20
85
8
72
48
1
1
48
1.23
5065665--5065721
30
1.9
30
85
0
78
40
12
3
43
1.59
5067730--5067757
11
2.5
11
100
0
56
35
17
0
46
1.49
5068579--5068606
12
2.3
12
100
0
56
57
7
0
35
1.26
5068595--5068651
16
3.2
18
75
12
64
49
5
0
45
1.24
5068596--5068652
17
3.3
17
70
9
53
47
5
0
47
1.24
5077349--5077423
24
2.6
30
70
29
81
33
21
9
36
1.85
5077369--5077414
24
1.9
24
100
0
92
36
23
8
30
1.85
5077699--5077950
94
2.7
90
79
12
224
28
12
13
45
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5078214--5078261
9
5.3
9
80
7
53
18
31
0
50
1.48
5079223--5079259
19
1.9
19
94
0
65
40
8
16
35
1.78
5079223--5079282
19
2.8
22
82
9
63
38
6
16
38
1.75
5079552--5079586
19
1.9
19
88
11
56
31
0
0
68
0.90
5087098--5087147
17
3.0
17
75
18
52
62
0
2
36
1.07
5087553--5087668
3
39.0
3
68
22
50
60
0
4
35
1.17
5087561--5087646
20
4.2
20
69
20
54
60
0
5
33
1.21
5087553--5087681
30
4.2
31
74
12
99
60
0
4
34
1.17
5087600--5087668
23
3.0
23
73
10
70
62
0
2
34
1.10
5087600--5087672
15
5.2
13
75
16
58
63
0
2
34
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425