Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  351  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108565747--108565794
20
2.4
20
79
6
53
50
2
2
45
1.25
108565853--108565948
42
2.2
44
88
5
142
53
6
6
34
1.51
108566519--108566545
7
3.9
7
100
0
54
14
25
14
44
1.84
108567572--108567604
2
16.5
2
100
0
66
51
0
0
48
1.00
108567691--108567722
2
16.5
2
93
6
57
53
0
0
46
1.00
108569163--108569205
19
2.3
19
83
0
50
4
4
9
81
0.97
108571860--108571965
54
1.9
55
94
1
187
48
16
6
29
1.71
108581123--108581151
2
15.0
2
92
7
51
48
0
0
51
1.00
108590090--108590127
19
2.0
19
89
0
58
44
18
15
21
1.86
108594432--108594470
14
2.8
14
96
0
69
20
10
12
56
1.65
108598042--108598207
53
3.1
53
88
6
221
25
15
28
30
1.96
108605551--108605705
53
3.0
53
88
5
210
25
16
28
29
1.96
108615049--108615223
99
1.8
99
86
8
263
23
30
18
26
1.98
108615049--108615366
46
6.7
45
73
15
225
22
29
19
27
1.98
108615051--108615366
94
3.3
90
80
9
273
23
29
19
27
1.98
108615050--108615363
140
2.2
142
82
11
360
22
29
19
28
1.98
108617190--108617296
42
3.0
33
71
22
81
32
20
5
41
1.76
108617205--108617288
42
2.0
42
97
0
159
29
21
5
42
1.76
108625330--108625379
23
2.2
23
82
3
57
48
2
4
46
1.32
108626336--108626369
4
8.5
4
100
0
68
26
0
0
73
0.83
108629815--108629871
22
2.6
21
75
22
55
70
3
3
22
1.18
108635250--108635298
2
24.5
2
100
0
98
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108635310--108635334
12
2.1
12
100
0
50
60
0
40
0
0.97
108635540--108635603
16
3.9
17
70
17
55
62
0
1
35
1.05
108635876--108635988
47
2.5
46
75
16
117
58
0
6
35
1.23
108642873--108642974
27
3.8
27
78
2
107
38
12
22
26
1.90
108642873--108642996
27
4.6
26
75
10
106
37
12
21
29
1.90
108642876--108642994
54
2.2
54
83
4
150
36
12
22
27
1.91
108656160--108656223
19
3.2
20
76
14
62
75
1
0
23
0.90
108656167--108656223
14
4.3
14
76
10
66
73
1
0
24
0.92
108656174--108656224
26
2.0
26
92
0
84
72
3
0
23
1.01
108659534--108659568
8
4.4
8
85
0
52
14
25
37
22
1.92
108661057--108661253
43
4.6
42
76
6
180
30
27
15
25
1.96
108661052--108661253
86
2.3
84
79
6
199
32
27
14
25
1.95
108661076--108661324
129
1.9
129
81
4
297
32
27
12
26
1.93
108664131--108664161
16
1.9
16
93
0
53
25
0
3
70
1.02
108665284--108665327
14
3.1
14
78
12
54
50
29
0
20
1.49
108665349--108665415
22
3.1
22
73
4
55
50
25
1
22
1.57
108665382--108665413
14
2.3
14
94
0
55
50
21
0
28
1.49
108665522--108665636
40
2.9
40
78
0
140
30
22
13
33
1.92
108671980--108672048
18
3.8
18
82
0
75
39
14
15
30
1.88
108671980--108672052
36
2.0
36
83
0
92
38
13
16
31
1.88
108672020--108672055
18
2.0
18
100
0
72
33
16
22
27
1.95
108672573--108672903
166
2.0
165
97
0
626
22
25
13
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108674691--108674766
3
25.3
3
100
0
152
67
0
0
32
0.91
108674991--108675034
22
2.0
22
95
0
79
47
11
18
22
1.80
108677191--108677228
20
1.9
20
88
0
58
52
5
5
36
1.47
108677693--108677824
31
4.3
31
80
8
153
40
1
3
53
1.28
108677694--108677808
61
1.9
61
96
0
212
41
1
3
53
1.28
108677770--108677839
15
4.6
15
80
18
74
38
2
4
54
1.35
108690036--108690095
18
3.3
18
75
9
59
41
15
10
33
1.80
108691112--108691148
2
19.0
2
94
5
67
51
0
0
48
1.00
108693283--108693604
46
7.0
46
92
0
500
40
15
22
21
1.91
108693284--108693652
138
2.6
138
91
2
560
40
14
23
21
1.90
108693292--108693657
46
7.8
50
82
12
350
40
15
22
21
1.90
108694714--108694752
20
1.9
21
84
5
53
41
12
0
46
1.42
108695534--108695573
19
2.1
19
95
0
71
0
25
5
70
1.08
108695584--108695617
12
2.8
12
83
16
52
52
5
0
41
1.25
108696664--108696729
33
2.0
33
96
0
123
37
12
13
36
1.82
108706610--108706741
35
3.6
37
82
12
157
32
23
11
32
1.90
108714026--108714192
35
4.6
35
85
7
201
33
24
10
31
1.90
108714021--108714192
75
2.4
73
84
8
226
33
23
11
31
1.90
108717108--108717137
11
2.7
11
89
0
51
66
6
6
20
1.38
108717892--108718043
40
3.8
40
81
1
153
22
25
17
34
1.96
108717973--108718051
40
2.0
40
85
5
106
24
25
17
32
1.97
108728725--108728775
19
2.5
20
76
17
61
39
3
15
41
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108728940--108728982
17
2.4
18
80
7
61
53
0
4
41
1.21
108735815--108735865
19
2.5
20
76
17
61
39
3
15
41
1.66
108737761--108737895
26
5.2
26
97
0
227
34
5
24
36
1.78
108743586--108743720
26
5.2
26
97
0
227
34
5
24
36
1.78
108748251--108748323
29
2.6
28
83
12
80
28
2
6
61
1.35
108749782--108749851
28
2.4
29
81
11
99
35
2
2
58
1.28
108750016--108750041
1
26.0
1
100
0
52
100
0
0
0
0.00
108753616--108753654
20
2.0
20
89
0
60
48
2
12
35
1.55
108758944--108758986
3
14.7
3
85
4
61
69
2
2
25
1.12
108759257--108759471
40
5.5
40
88
3
296
22
23
28
25
1.99
108759257--108759471
79
2.7
80
87
4
296
22
23
28
25
1.99
108767327--108767544
40
5.5
40
86
2
280
22
23
28
25
1.99
108772683--108772731
25
2.0
24
84
8
62
26
24
16
32
1.96
108772819--108772945
48
2.6
48
88
2
191
22
21
19
37
1.95
108772856--108772930
23
3.2
23
70
7
78
22
21
22
33
1.97
108773154--108773238
23
3.5
23
73
14
89
40
2
27
30
1.69
108773143--108773245
51
2.0
51
98
0
197
40
3
26
29
1.73
108773911--108773955
2
22.5
2
95
0
81
46
0
2
51
1.13
108774738--108774788
26
2.0
26
92
0
84
27
15
33
23
1.95
108792617--108792680
31
2.1
31
90
0
101
21
20
17
40
1.91
108792872--108792991
24
5.0
24
92
3
188
25
21
23
29
1.99
108793042--108793101
20
3.0
20
90
0
102
33
20
11
35
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108793144--108793191
25
1.9
25
82
0
60
25
14
25
35
1.94
108796832--108796975
46
3.1
46
82
0
162
46
26
15
11
1.80
108796832--108796975
69
2.1
69
84
0
180
46
26
15
11
1.80
108796832--108796975
23
6.3
23
83
0
144
46
26
15
11
1.80
108798455--108798520
26
2.6
26
77
17
75
71
0
24
4
1.05
108798445--108798513
16
4.1
16
71
23
52
72
0
24
2
0.98
108804008--108804081
39
2.0
36
89
10
114
50
17
5
27
1.68
108808728--108808923
98
2.0
96
96
2
356
22
37
14
26
1.92
108811449--108811517
5
14.6
5
74
19
51
71
1
27
0
0.95
108811448--108811512
22
3.0
22
76
19
75
72
1
26
0
0.94
108811453--108811518
26
2.5
27
90
9
102
71
1
27
0
0.95
108815684--108815729
18
2.6
18
86
6
58
34
26
13
26
1.92
108816261--108816330
27
2.6
27
79
0
77
22
21
24
31
1.98
108820124--108820255
50
2.6
51
84
3
176
40
12
13
34
1.82
108820124--108820241
50
2.3
52
89
2
177
40
12
13
33
1.82
108821931--108821990
31
1.9
32
86
3
86
38
0
3
58
1.15
108821978--108822002
8
3.1
8
100
0
50
24
0
0
76
0.80
108823529--108823607
40
2.0
40
100
0
158
35
2
17
44
1.63
108823541--108823606
21
3.2
21
66
30
61
36
3
18
42
1.66
108825493--108825537
3
15.0
3
100
0
90
33
0
0
66
0.92
108827858--108827902
20
2.3
19
81
7
54
24
15
31
28
1.96
108827865--108827902
20
1.9
20
88
0
58
26
15
28
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108832423--108832480
28
2.1
28
96
0
107
56
5
6
31
1.47
108832628--108832660
13
2.4
14
85
10
50
57
15
6
21
1.59
108833209--108833248
18
2.2
19
86
4
55
35
10
20
35
1.86
108843751--108843868
43
2.8
42
77
11
123
32
27
17
22
1.97
108845912--108845963
25
2.1
25
100
0
104
28
23
11
36
1.90
108853635--108853725
46
2.0
46
82
4
112
23
15
16
45
1.85
108853748--108853777
15
1.9
16
93
6
53
56
6
3
33
1.42
108854255--108854292
14
2.7
14
88
8
51
36
5
18
39
1.73
108854395--108854462
35
1.9
35
96
0
127
39
2
1
55
1.24
108858533--108858595
31
2.0
31
90
0
99
55
4
25
14
1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425