genome.fa.s8.2.7.7.80.10.50.1000.350.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  350  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108233133--108233221	44	2.0	44	82	4	108	37	24	19	19	1.94
108234039--108234087	24	2.0	25	84	7	66	2	12	8	77	1.07
108234093--108234136	8	5.5	8	88	0	70	40	0	0	59	0.98
108239628--108239778	40	3.7	39	82	6	194	23	15	26	34	1.95
108247265--108247319	25	2.2	25	93	0	92	21	30	1	45	1.62
108251642--108251735	43	2.2	44	90	1	145	31	25	18	24	1.97
108252003--108252055	17	3.1	18	75	8	65	52	1	5	39	1.36
108255585--108255611	6	4.5	6	100	0	54	48	14	18	18	1.82
108256484--108256523	20	2.1	18	90	9	62	0	32	0	67	0.91
108258650--108258704	19	2.8	19	75	2	56	47	0	0	52	1.00
108261695--108261775	39	2.1	39	100	0	162	24	18	17	39	1.92
108272618--108272657	21	1.9	21	85	10	55	20	30	22	27	1.98
108276969--108277117	75	2.0	75	91	0	244	25	22	21	30	1.99
108290525--108290554	6	5.0	6	100	0	60	0	50	0	50	1.00
108300384--108300433	22	2.3	22	89	0	73	66	8	6	20	1.40
108301737--108301795	22	2.7	23	79	10	61	47	0	1	50	1.11
108302527--108302655	68	1.9	68	91	3	215	31	18	9	40	1.82
108307431--108307469	21	1.9	21	89	5	62	43	0	7	48	1.31
108308834--108308873	6	6.7	6	94	0	71	17	15	15	52	1.75
108308987--108309115	18	7.1	18	74	5	89	34	14	14	36	1.87
108316330--108316373	11	3.8	11	77	11	52	34	0	2	63	1.07
108318339--108318454	33	3.4	32	72	8	97	32	15	28	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108323786--108323944	29	5.4	29	88	6	205	27	25	14	33	1.94
108323786--108323944	30	5.4	30	88	8	211	27	25	14	33	1.94
108323786--108323944	59	2.7	57	88	4	212	27	25	14	33	1.94
108331823--108331982	29	5.5	29	86	6	198	27	25	13	33	1.94
108331823--108331982	30	5.5	30	86	8	204	27	25	13	33	1.94
108331823--108331982	59	2.8	57	86	4	205	27	25	13	33	1.94
108331909--108331980	28	2.5	29	86	4	92	30	27	12	29	1.93
108337056--108337278	47	4.7	46	74	11	168	27	18	28	25	1.98
108337056--108337278	94	2.4	93	83	6	263	27	18	28	25	1.98
108349980--108350053	37	2.0	37	100	0	148	35	27	16	21	1.94
108351700--108351778	41	1.9	41	100	0	158	53	10	11	25	1.68
108355707--108355793	26	3.3	26	79	10	72	52	5	0	41	1.25
108358314--108358397	21	4.1	21	66	23	54	8	23	1	66	1.26
108367858--108367923	31	2.2	30	78	10	71	33	13	16	36	1.88
108368444--108368475	16	2.0	16	93	0	55	37	21	12	28	1.90
108371596--108371654	29	2.0	29	100	0	118	49	13	13	23	1.78
108374749--108374818	23	3.0	23	100	0	140	34	21	8	35	1.84
108377742--108377783	2	22.0	2	85	9	61	45	0	2	52	1.13
108380036--108380093	26	2.3	26	81	3	64	25	13	20	39	1.90
108380399--108380442	23	1.9	23	86	9	63	43	6	15	34	1.74
108381477--108381533	27	2.1	27	100	0	114	42	10	7	40	1.66
108383053--108383101	25	1.9	26	84	12	66	55	12	10	22	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108394218--108394274	27	2.2	25	87	9	80	42	14	5	38	1.68
108394227--108394283	27	2.1	27	100	0	114	38	17	7	36	1.77
108417137--108417194	3	19.3	3	100	0	116	32	0	0	67	0.91
108422032--108422212	40	4.6	40	77	9	167	24	24	26	24	2.00
108424998--108425057	26	2.3	25	88	8	93	51	10	25	13	1.71
108425008--108425061	26	2.1	26	100	0	108	50	11	22	16	1.77
108431272--108431304	16	2.0	17	88	5	50	36	21	0	42	1.53
108431797--108431845	3	16.3	3	83	8	64	61	2	0	36	1.08
108432258--108432307	5	10.0	5	78	8	57	54	2	0	44	1.11
108432258--108432309	16	3.4	16	82	12	65	53	1	0	44	1.11
108433108--108433158	27	1.9	26	84	11	68	27	3	17	50	1.63
108437275--108437313	10	3.9	10	86	0	51	43	20	28	7	1.79
108437275--108437313	15	2.6	15	87	0	60	43	20	28	7	1.79
108442030--108442082	21	2.5	21	81	0	61	41	5	20	32	1.76
108450441--108450485	18	2.3	19	81	14	56	31	26	11	31	1.91
108450451--108450486	18	2.0	18	94	0	63	25	27	13	33	1.94
108453325--108453373	20	2.5	20	83	6	64	28	16	14	40	1.87
108455051--108455210	29	5.5	30	86	8	204	26	25	14	33	1.94
108462966--108463125	29	5.5	30	88	8	213	26	25	14	33	1.94
108462966--108463125	59	2.8	57	88	4	214	26	25	14	33	1.94
108474127--108474168	10	4.3	10	78	6	50	69	2	0	28	1.01
108475898--108475957	30	2.0	30	86	0	84	25	6	13	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108476079--108476112	12	2.8	12	95	0	59	61	0	0	38	0.96
108476925--108476974	19	2.7	19	84	3	66	66	2	0	32	1.03
108477609--108477651	9	5.0	9	88	2	54	41	0	11	46	1.40
108478254--108478300	14	3.4	14	77	8	51	78	2	10	8	1.04
108480578--108480611	3	11.3	3	87	0	50	29	29	2	38	1.72
108483196--108483346	17	7.9	18	68	21	53	60	1	1	35	1.20
108483194--108483263	31	2.4	29	83	13	81	60	2	2	34	1.26
108483288--108483445	9	16.6	10	66	22	58	63	1	2	32	1.19
108483286--108483327	17	2.5	16	88	11	66	61	0	0	38	0.96
108483285--108483420	19	6.7	19	67	20	62	60	1	2	36	1.18
108483340--108483423	9	8.7	10	71	16	61	63	1	2	33	1.15
108483331--108483450	19	6.1	19	71	18	77	64	1	2	31	1.17
108486900--108486946	23	2.0	25	87	8	71	61	6	10	21	1.50
108491004--108491042	20	2.0	21	85	10	55	53	0	20	25	1.45
108491524--108491566	2	21.5	2	100	0	86	48	0	0	51	1.00
108500457--108500498	18	2.4	17	81	18	50	35	2	2	59	1.23
108501790--108501828	18	2.3	18	91	8	64	71	2	5	20	1.17
108503113--108503180	30	2.3	30	82	5	75	45	5	20	27	1.74
108510405--108510478	19	3.9	18	78	15	78	21	27	24	27	1.99
108510864--108510893	6	5.0	6	100	0	60	83	0	0	16	0.65
108513246--108513408	39	4.2	39	92	0	254	25	31	19	23	1.98
108516596--108516641	24	1.9	24	91	8	76	54	8	0	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108519761--108519816	24	2.4	24	82	8	62	30	23	26	19	1.98
108519845--108519910	24	2.7	24	85	2	87	43	18	19	18	1.88
108520854--108520967	27	4.3	27	83	9	135	33	21	25	19	1.97
108520854--108520967	54	2.1	53	85	4	149	33	21	25	19	1.97
108520880--108521059	93	1.9	92	84	9	242	34	22	25	17	1.96
108520973--108521078	27	3.9	27	82	11	137	33	23	24	18	1.97
108520854--108521081	120	1.9	119	90	4	361	33	22	25	18	1.97
108520906--108521033	66	1.9	66	98	0	247	34	22	24	18	1.96
108520971--108521077	54	2.0	54	98	0	205	33	23	24	18	1.97
108522677--108522784	26	4.2	26	92	0	180	37	24	6	32	1.81
108524840--108525196	43	8.3	43	78	3	261	31	23	16	28	1.96
108524844--108525191	86	4.0	86	79	2	306	30	23	16	28	1.96
108524840--108525196	129	2.8	128	77	2	322	31	23	16	28	1.96
108525531--108525571	21	2.0	21	85	0	55	2	39	17	41	1.62
108526016--108526044	13	2.1	14	93	6	51	55	10	0	34	1.34
108541838--108541943	9	11.8	9	75	12	85	36	0	16	46	1.48
108544994--108545348	64	5.3	64	62	22	170	31	25	17	25	1.97
108544960--108545383	137	3.1	137	95	0	758	31	24	18	25	1.97
108545631--108545683	26	2.0	27	85	7	74	24	15	22	37	1.92
108547168--108547277	26	4.2	26	97	0	193	37	24	4	33	1.76
108551232--108551440	64	3.1	64	63	20	147	29	26	17	25	1.98
108551061--108551484	137	3.1	137	95	0	749	32	25	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108551732--108551784	26	2.0	27	85	7	74	24	15	22	37	1.92
108554725--108554778	21	2.6	21	84	0	81	55	29	0	14	1.40
108554753--108554811	28	2.1	28	81	6	66	57	23	0	18	1.40
108555376--108555495	41	2.9	41	70	11	111	26	21	19	32	1.97
108558073--108558249	90	2.0	91	82	6	218	42	14	9	33	1.78
108562997--108563102	52	2.0	52	100	0	212	34	10	20	33	1.87
108563468--108563515	22	2.1	23	88	3	71	52	0	10	37	1.36
108563826--108563866	19	2.1	20	86	4	57	26	29	0	43	1.55
108563839--108563896	30	2.0	29	86	3	80	20	41	0	37	1.53
108564891--108564976	43	2.0	41	82	4	100	38	5	3	52	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425