genome.fa.s8.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  120  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35686759--35686947	80	2.4	81	77	4	186	23	24	29	22	1.99
35693905--35694049	40	3.6	39	79	3	137	24	24	28	22	2.00
35693906--35694094	80	2.4	81	77	4	186	23	24	29	22	1.99
35704594--35704706	54	2.1	54	83	6	140	27	26	24	21	1.99
35704616--35704735	54	2.2	53	76	8	118	27	25	25	21	1.99
35707347--35707513	40	4.2	40	82	2	185	24	26	22	26	2.00
35715342--35715509	40	4.2	40	83	2	187	25	26	22	26	2.00
35725976--35726117	49	3.0	47	93	4	257	33	8	28	30	1.87
35726109--35726356	48	5.2	49	92	4	400	35	6	27	31	1.82
35726396--35726523	37	3.4	37	92	1	202	23	17	32	26	1.96
35729783--35729952	46	3.7	45	79	7	189	28	29	20	21	1.98
35731647--35731679	18	1.9	17	88	11	50	30	15	12	42	1.83
35732210--35732282	32	2.3	32	85	0	92	34	20	16	28	1.94
35732810--35732862	27	2.0	27	92	0	88	26	20	18	33	1.96
35732821--35732951	27	4.9	27	79	1	120	28	14	20	36	1.92
35732820--35732950	54	2.4	54	79	5	140	28	14	20	36	1.92
35735677--35735740	31	2.1	31	90	0	101	25	23	15	35	1.94
35735933--35736122	24	8.0	24	91	4	287	25	22	23	28	1.99
35735958--35736122	47	3.5	47	94	1	285	26	21	24	27	1.99
35735933--35736122	71	2.7	72	90	4	296	25	22	23	28	1.99
35736181--35736257	9	7.9	9	72	16	64	35	20	9	35	1.85
35736177--35736259	20	4.2	20	96	0	157	32	19	12	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35736177--35736248	11	7.1	11	70	17	66	31	19	12	36	1.89
35736296--35736343	25	1.9	25	82	0	60	25	16	22	35	1.95
35737582--35738112	27	19.7	27	84	3	487	40	9	21	28	1.83
35737584--35738112	81	6.5	81	85	3	652	40	9	21	28	1.84
35737584--35738112	54	9.8	54	85	2	643	40	9	21	28	1.84
35746162--35746187	13	2.0	13	100	0	52	61	30	0	7	1.24
35752401--35752464	25	2.4	27	80	10	71	37	1	7	53	1.40
35752414--35752466	27	2.0	25	85	7	70	41	0	5	52	1.25
35754736--35754954	40	5.5	41	83	5	182	25	24	27	22	2.00
35754732--35754990	80	3.3	80	82	5	294	25	23	26	23	2.00
35754732--35754990	119	2.2	120	82	7	298	25	23	26	23	2.00
35762908--35763132	40	5.6	40	83	5	258	25	24	27	23	2.00
35762908--35763168	80	3.3	80	83	3	312	25	24	26	23	2.00
35762908--35763168	120	2.2	120	83	6	325	25	24	26	23	2.00
35768628--35768689	25	2.4	27	78	10	67	37	1	6	54	1.36
35768676--35768704	15	1.9	15	100	0	58	41	0	0	58	0.98
35769639--35769670	5	6.2	5	92	7	55	0	21	0	78	0.76
35773828--35773865	19	2.0	19	94	0	67	26	15	23	34	1.95
35775252--35775414	70	2.3	71	97	1	310	19	28	18	34	1.95
35775252--35775448	70	2.8	70	90	4	249	20	28	17	32	1.96
35782755--35782907	71	2.2	69	87	4	218	19	29	16	34	1.94
35784582--35784749	40	4.2	40	80	1	167	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35784598--35784747	80	1.9	80	83	5	196	22	27	24	26	2.00
35792559--35792726	40	4.2	40	80	1	167	23	27	23	25	2.00
35792575--35792724	80	1.9	80	83	5	196	22	27	24	26	2.00
35794970--35795154	40	4.6	39	80	8	210	24	23	28	23	2.00
35794970--35795154	80	2.3	81	83	4	232	24	23	28	23	2.00
35797240--35797269	15	2.1	15	93	6	53	30	6	26	36	1.82
35799152--35799315	43	3.9	42	79	4	143	26	21	28	24	1.99
35800434--35800564	26	5.2	26	82	3	162	26	22	21	29	1.99
35800452--35800564	52	2.2	52	93	1	192	25	23	22	29	1.99
35800614--35800688	20	3.8	20	86	6	93	33	18	9	38	1.83
35800642--35800690	5	10.2	5	77	16	50	34	20	6	38	1.77
35803369--35803520	48	3.2	48	90	0	250	32	5	27	33	1.81
35803447--35803589	75	1.9	75	95	0	259	33	8	27	30	1.86
35803399--35803643	123	2.0	123	95	0	445	33	7	26	31	1.84
35803522--35804058	48	11.4	48	89	3	811	35	6	25	32	1.82
35808750--35808909	29	5.5	29	86	6	198	26	25	14	33	1.94
35808750--35808909	30	5.5	30	86	8	204	26	25	14	33	1.94
35808750--35808909	59	2.8	57	86	4	205	26	25	14	33	1.94
35808888--35808994	42	2.5	42	98	0	205	22	33	14	29	1.93
35813814--35813857	20	2.2	20	100	0	88	25	34	25	15	1.95
35813870--35813901	15	2.1	15	94	0	55	40	28	6	25	1.79
35815981--35816059	26	3.2	26	82	7	94	27	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35816109--35816183	20	3.8	20	91	6	111	33	18	9	38	1.83
35816109--35816164	11	5.5	11	71	16	57	32	19	10	37	1.86
35816126--35816182	9	5.8	10	76	15	57	33	19	8	38	1.82
35830235--35830329	4	23.8	4	97	0	181	50	0	24	25	1.49
35830327--35830371	2	22.5	2	100	0	90	51	0	48	0	1.00
35832431--35832487	9	5.9	9	73	15	51	35	8	21	35	1.84
35832429--35832499	20	3.5	20	94	0	124	35	11	21	32	1.89
35832440--35832494	11	5.4	11	70	16	55	36	12	20	30	1.90
35832545--35832711	24	7.0	23	86	6	219	29	23	22	25	1.99
35832544--35832710	47	3.5	47	88	5	239	28	23	22	25	1.99
35837433--35837616	40	4.6	40	81	2	172	28	22	26	22	1.99
35837473--35837661	80	2.4	80	77	5	184	24	22	29	23	1.99
35845524--35845707	40	4.6	40	81	2	172	28	22	26	22	1.99
35845564--35845752	80	2.4	80	77	5	184	24	22	29	23	1.99
35850766--35850790	13	1.9	13	100	0	50	0	16	0	84	0.63
35854038--35854258	124	1.8	121	83	4	291	32	11	23	33	1.90
35854215--35854398	40	4.6	40	81	2	172	28	22	26	22	1.99
35854255--35854443	80	2.4	80	77	5	184	24	22	29	23	1.99
35862910--35863093	40	4.6	40	81	2	172	28	22	26	22	1.99
35862950--35863138	80	2.4	80	77	5	184	24	22	29	23	1.99
35868182--35868206	13	1.9	13	100	0	50	0	16	0	84	0.63
35869349--35869405	9	5.9	9	73	15	51	35	8	21	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35869347--35869417	20	3.5	20	94	0	124	35	11	21	32	1.89
35869358--35869412	11	5.4	11	70	16	55	36	12	20	30	1.90
35869463--35869629	24	7.0	23	86	6	219	29	23	22	25	1.99
35869462--35869628	47	3.5	47	88	5	239	28	23	22	25	1.99
35871222--35871270	21	2.3	21	82	0	62	32	32	14	20	1.92
35873030--35873116	45	1.9	45	93	4	149	35	25	12	26	1.92
35873049--35873124	21	3.5	21	65	16	55	36	26	14	22	1.92
35877273--35877385	27	4.1	27	85	8	140	17	23	22	36	1.95
35877273--35877385	55	2.1	54	86	5	156	17	23	22	36	1.95
35883269--35883293	9	2.8	9	100	0	50	12	0	28	60	1.32
35885114--35885172	28	2.1	28	87	6	84	18	22	25	33	1.96
35885129--35885196	27	2.5	28	83	6	79	16	22	22	39	1.92
35887919--35887963	23	1.9	24	90	4	74	42	11	24	22	1.86
35895325--35895533	54	3.9	52	78	11	185	36	15	24	22	1.93
35895325--35895533	107	1.9	108	85	4	289	36	15	24	22	1.93
35895640--35895684	23	1.9	24	86	4	65	42	8	24	24	1.83
35895763--35895793	16	1.9	16	93	0	53	41	0	22	35	1.54
35897045--35897122	39	2.0	39	100	0	156	35	17	10	35	1.84
35903229--35903276	24	2.0	24	100	0	96	41	20	12	25	1.87
35904281--35904319	15	2.6	15	100	0	78	15	15	33	35	1.89
35905127--35905413	27	10.6	27	85	0	376	41	19	7	31	1.80
35905127--35905413	54	5.3	54	88	1	414	41	19	7	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35905127--35905548	54	7.8	53	78	5	321	39	21	8	30	1.83
35905127--35905548	81	5.2	81	78	6	365	39	21	8	30	1.83
35905127--35905457	27	12.3	27	76	10	232	40	19	8	31	1.81
35905504--35905647	27	5.3	27	84	3	173	37	19	18	24	1.94
35905477--35905657	81	2.2	81	77	3	186	34	21	16	27	1.95
35905514--35905647	54	2.5	54	87	0	196	35	20	20	23	1.96
35906180--35906372	6	31.3	6	73	16	137	18	16	15	49	1.80
35906183--35906231	25	2.0	25	95	0	89	20	20	14	44	1.86
35906202--35906284	37	2.2	37	80	0	103	18	15	18	48	1.82
35906181--35906372	62	3.1	62	87	2	271	17	16	15	50	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425