genome.fa.s8.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  219  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66430850--66430910	30	2.0	30	83	0	77	31	22	8	37	1.84
66434158--66434245	30	2.9	30	78	9	90	28	17	25	29	1.97
66435839--66435878	2	20.0	2	100	0	80	50	0	0	50	1.00
66436825--66437029	35	5.9	35	78	4	189	41	20	9	28	1.83
66436827--66437029	105	1.9	103	79	9	223	42	20	8	28	1.82
66440737--66440800	31	2.1	31	90	0	101	25	23	15	35	1.94
66440994--66441114	24	5.0	24	86	7	156	26	22	22	28	1.99
66441159--66441207	20	2.5	20	96	0	89	34	22	8	34	1.84
66442455--66442531	27	2.9	27	77	11	77	23	20	19	36	1.95
66442572--66442623	27	1.9	27	88	7	79	36	11	11	40	1.78
66442655--66442759	27	3.9	27	75	8	99	30	8	20	40	1.83
66442751--66442905	27	5.8	27	87	2	197	40	9	22	27	1.85
66442759--66442908	81	1.9	81	87	2	221	40	10	23	26	1.86
66442741--66442935	81	2.4	79	77	6	194	36	9	23	30	1.86
66443982--66444105	48	2.5	48	86	2	158	28	14	25	31	1.95
66444105--66444193	42	2.1	42	85	4	117	31	14	24	29	1.95
66447147--66447177	16	2.0	15	93	6	53	51	25	19	3	1.62
66447568--66447680	27	4.2	28	90	3	162	19	23	22	34	1.96
66447566--66447680	55	2.1	53	87	7	169	19	23	22	34	1.96
66456141--66456341	70	2.9	70	82	4	201	42	19	10	27	1.85
66456174--66456354	35	5.2	35	81	5	102	42	21	9	26	1.83
66456151--66456354	105	1.9	104	80	5	232	43	20	9	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66462897--66462937	7	6.0	7	85	5	57	14	0	2	82	0.76
66462904--66462958	21	2.8	20	81	13	60	21	1	0	76	0.88
66462969--66463004	13	2.6	15	79	20	51	38	0	0	61	0.96
66464645--66464706	31	2.0	31	96	0	115	30	16	12	40	1.86
66468764--66468807	21	2.1	21	83	8	54	68	2	2	27	1.14
66469113--66469195	19	4.3	19	72	14	62	33	1	2	62	1.16
66470303--66470334	14	2.3	15	89	10	50	46	3	0	50	1.17
66470815--66471032	89	2.4	89	86	2	276	32	9	18	38	1.84
66475390--66475430	21	2.0	21	90	0	64	29	21	29	19	1.98
66477321--66477354	16	2.1	16	88	0	50	50	14	17	17	1.79
66478198--66478249	24	2.2	25	83	13	65	51	0	0	48	1.00
66478198--66478249	25	2.0	26	85	14	72	51	0	0	48	1.00
66482250--66482282	2	16.5	2	100	0	66	51	0	0	48	1.00
66484493--66484519	14	1.9	14	100	0	54	51	14	7	25	1.68
66488823--66488855	5	6.6	5	100	0	66	81	0	0	18	0.68
66490002--66490057	26	2.2	26	83	6	69	41	16	1	41	1.58
66493965--66493994	2	15.0	2	100	0	60	50	0	50	0	1.00
66497860--66497961	35	2.9	35	82	2	134	26	16	26	30	1.97
66500496--66500671	46	3.8	46	79	12	216	20	21	29	28	1.98
66500493--66500664	93	1.8	93	96	0	317	20	21	29	27	1.98
66503130--66503181	20	2.6	20	96	0	95	11	26	40	21	1.87
66507305--66507387	35	2.2	38	87	10	118	27	15	6	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66507452--66507515	27	2.4	26	82	5	74	50	6	6	37	1.53
66517761--66517830	28	2.5	28	90	4	106	32	27	12	27	1.93
66518385--66518412	2	14.0	2	100	0	56	50	0	0	50	1.00
66524291--66524348	22	2.6	22	80	0	71	29	27	31	12	1.92
66525489--66525705	47	4.6	48	78	11	197	23	28	19	28	1.98
66525582--66525707	45	2.7	45	83	9	139	23	27	20	27	1.99
66525489--66525705	93	2.3	94	79	12	234	23	28	19	28	1.98
66529291--66529352	28	2.2	28	94	0	106	8	8	19	64	1.45
66531954--66531995	22	1.9	23	85	9	61	30	21	16	30	1.95
66534896--66535113	40	5.5	40	90	4	293	22	22	28	26	1.99
66540354--66540550	77	2.6	76	84	6	231	31	10	12	45	1.76
66540524--66540579	27	2.1	27	96	0	103	32	10	12	44	1.77
66551015--66551070	26	2.2	26	100	0	112	35	26	7	30	1.83
66554970--66555094	40	3.1	40	90	2	189	26	25	21	26	2.00
66561554--66561609	26	2.2	26	100	0	112	35	26	7	30	1.83
66566048--66566155	37	2.9	36	76	14	87	37	2	4	54	1.36
66568319--66568445	43	3.0	43	80	7	161	23	16	27	32	1.96
66570517--66570547	9	3.4	9	95	0	53	25	0	41	32	1.56
66582568--66582679	40	2.8	40	77	6	118	24	15	25	34	1.94
66591317--66591388	15	4.7	15	84	8	92	15	0	37	47	1.46
66591317--66591389	8	9.5	8	82	5	89	15	0	36	47	1.45
66612452--66612476	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66622673--66622784	18	6.2	18	80	4	118	38	17	9	33	1.83
66622673--66622784	36	3.1	36	82	5	136	38	17	9	33	1.83
66624003--66624039	17	2.2	17	90	0	56	0	24	0	75	0.80
66624066--66624112	19	2.5	18	89	6	67	10	14	2	72	1.21
66624446--66624496	20	2.6	19	75	9	57	45	17	1	35	1.60
66627228--66627252	2	12.5	2	100	0	50	48	0	0	52	1.00
66629374--66629540	27	6.3	26	83	10	103	31	11	16	39	1.85
66629386--66629542	54	2.9	54	90	6	232	33	10	17	38	1.85
66629397--66629542	27	5.4	27	87	8	192	34	10	16	39	1.82
66632869--66632980	18	6.2	18	69	0	62	36	16	11	35	1.85
66634423--66634517	25	3.8	25	92	0	154	25	23	26	25	2.00
66634722--66634863	27	5.3	27	82	3	178	28	19	16	35	1.93
66634845--66634963	27	4.4	27	80	6	143	31	10	20	38	1.85
66634721--66634890	81	2.1	81	82	8	204	29	18	15	36	1.92
66634764--66634921	54	2.9	52	81	4	145	31	14	17	37	1.89
66634818--66634973	81	1.9	81	81	10	185	31	12	17	38	1.87
66634845--66634973	54	2.4	54	84	2	161	31	10	18	39	1.84
66634940--66635160	81	2.7	81	87	1	255	39	9	20	30	1.84
66634975--66635160	27	6.9	27	89	0	264	40	8	22	27	1.83
66636942--66636988	19	2.5	18	86	6	67	8	14	4	72	1.24
66639084--66639300	101	2.1	101	89	0	335	33	17	22	26	1.96
66641077--66641115	18	2.2	18	95	0	69	15	33	30	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66641161--66641198	18	2.2	18	85	4	51	15	39	26	18	1.91
66642322--66642350	14	2.1	14	100	0	58	27	37	13	20	1.91
66644981--66645029	24	2.0	24	100	0	98	36	12	0	51	1.40
66652478--66652588	24	4.6	24	97	0	213	21	17	25	36	1.95
66652478--66652610	24	5.5	24	92	1	196	24	17	24	34	1.96
66658614--66658678	3	21.7	3	100	0	130	66	0	0	33	0.92
66664912--66665005	39	2.4	38	82	5	109	36	39	10	13	1.80
66678594--66678675	40	2.0	40	95	0	146	23	19	7	50	1.72
66680759--66680826	12	5.5	12	73	16	59	61	2	7	27	1.37
66680752--66680837	38	2.3	37	76	11	95	63	2	5	27	1.29
66680935--66680990	25	2.3	23	81	9	67	66	0	1	32	1.03
66681638--66681675	17	2.2	18	85	4	51	81	10	2	5	0.94
66682270--66682302	17	1.9	17	93	0	57	18	6	6	69	1.30
66682450--66682599	80	1.9	79	87	1	219	25	24	18	31	1.98
66682651--66682744	44	2.1	44	86	3	127	28	24	15	30	1.96
66684630--66684820	40	4.8	40	88	1	260	25	24	27	23	2.00
66686903--66686974	35	2.1	34	97	2	135	40	18	5	36	1.74
66692104--66692233	40	3.2	40	82	4	165	23	28	24	23	2.00
66700154--66700283	40	3.2	40	82	4	165	23	28	24	23	2.00
66702157--66702288	29	4.6	28	70	7	95	28	29	18	23	1.97
66702188--66702287	29	3.4	29	72	10	96	30	31	17	22	1.96
66702151--66702319	58	2.9	57	90	4	259	29	28	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66702473--66702755	43	6.6	43	95	0	467	30	32	24	12	1.92
66702473--66702809	129	2.7	129	87	5	475	30	33	23	12	1.92
66702726--66702785	30	2.0	30	100	0	120	26	36	23	13	1.92
66704206--66704278	35	2.1	35	100	0	146	39	19	5	35	1.75
66707058--66707225	44	3.8	44	88	3	241	29	24	14	32	1.94
66708696--66708830	40	3.4	39	86	4	180	31	28	18	21	1.97
66719751--66720111	181	2.0	181	96	0	668	17	29	14	38	1.89
66723426--66723482	4	14.0	4	82	10	71	71	0	0	28	0.86
66723424--66723497	16	4.9	15	78	9	71	68	0	1	29	0.97
66724769--66724803	17	2.1	17	94	0	61	17	2	5	74	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425