Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  346  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107097971--107098042
35
2.1
34
84
7
92
51
9
19
19
1.74
107098595--107099726
84
13.3
84
86
3
1358
19
23
21
36
1.95
107098595--107099726
167
6.6
167
86
3
1340
19
23
21
36
1.95
107098595--107099726
251
4.4
252
86
3
1335
19
23
21
36
1.95
107099296--107099517
40
5.3
40
63
19
114
16
22
23
37
1.94
107099167--107099561
44
9.4
42
61
19
135
17
23
22
36
1.95
107099737--107100324
178
3.3
178
85
1
741
29
20
17
33
1.95
107099912--107100009
44
2.2
45
77
15
105
29
19
17
33
1.95
107107117--107107170
23
2.5
23
82
8
60
61
7
0
31
1.24
107107371--107107423
15
3.3
15
85
12
70
67
0
5
26
1.12
107107365--107107451
44
2.0
44
84
13
117
65
0
6
27
1.18
107107880--107107911
5
6.4
5
92
0
55
78
0
3
18
0.89
107109043--107109077
3
11.7
3
93
0
61
2
31
0
65
1.07
107128379--107128417
19
2.1
19
100
0
78
30
15
20
33
1.94
107128647--107128697
26
2.0
26
96
0
93
50
13
21
13
1.76
107129559--107129940
71
5.4
71
77
2
318
33
18
22
25
1.97
107129822--107129929
35
3.1
35
74
2
108
31
24
24
20
1.98
107129559--107129940
142
2.7
142
76
5
394
33
18
22
25
1.97
107130677--107130705
10
2.7
11
89
10
51
24
0
0
75
0.80
107132584--107132618
11
3.3
11
92
4
54
11
5
0
82
0.82
107138019--107138062
22
2.0
22
95
0
79
29
13
13
43
1.83
107139456--107139490
3
11.7
3
100
0
70
34
31
0
34
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107140307--107140336
11
2.7
11
94
0
51
16
0
3
80
0.85
107141625--107141716
4
23.0
4
100
0
184
50
25
0
25
1.50
107142559--107142611
27
2.0
27
84
0
70
22
13
26
37
1.91
107144033--107144164
57
2.3
57
77
0
138
34
19
4
41
1.72
107148605--107148773
40
4.2
40
84
0
149
34
15
28
20
1.94
107148639--107148773
20
6.7
20
68
13
80
33
14
28
22
1.94
107153297--107153369
23
3.2
22
78
7
74
9
24
26
39
1.86
107154026--107154050
11
2.3
11
100
0
50
28
16
28
28
1.97
107154604--107154675
36
2.0
36
100
0
144
50
2
19
27
1.62
107157469--107157603
23
5.9
23
77
11
143
25
23
17
33
1.96
107157458--107157585
45
2.8
45
86
3
177
25
23
17
32
1.97
107162363--107162403
20
2.0
20
100
0
82
43
19
19
17
1.88
107165547--107165587
21
2.0
21
85
0
55
58
14
19
7
1.59
107166859--107166887
2
14.5
2
100
0
58
51
0
0
48
1.00
107170068--107170100
2
16.5
2
93
0
57
51
3
0
45
1.16
107171978--107172034
22
2.5
24
83
13
77
24
0
5
70
1.08
107171977--107172033
29
2.0
29
83
13
73
24
0
5
70
1.08
107172402--107172429
14
2.0
14
100
0
56
71
0
0
28
0.86
107172633--107172674
7
5.9
7
81
15
50
66
2
0
30
1.04
107175231--107175280
25
2.0
25
100
0
100
40
12
12
36
1.79
107175793--107175857
19
3.4
19
93
0
112
32
7
10
49
1.66
107178204--107178400
41
4.8
41
78
2
180
35
22
22
20
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107185146--107185185
17
2.3
18
86
4
55
25
5
20
50
1.68
107198264--107198314
25
2.0
25
96
0
93
31
9
17
41
1.82
107200767--107200807
19
2.1
20
86
4
57
41
2
0
56
1.13
107209625--107209661
18
2.1
18
90
5
58
29
0
5
64
1.15
107220271--107220305
4
8.8
4
93
0
61
51
2
0
45
1.16
107220734--107220789
28
2.0
28
96
3
105
51
7
10
30
1.63
107228422--107228478
26
2.2
26
83
0
69
40
26
17
15
1.90
107228437--107228487
26
2.0
26
92
0
84
37
27
21
13
1.91
107228493--107228645
20
7.7
20
82
0
189
39
25
20
15
1.91
107228647--107228717
36
2.0
36
85
0
97
19
32
21
26
1.97
107228858--107228909
27
1.9
27
84
0
68
25
11
21
42
1.86
107245552--107245598
12
3.9
12
82
0
58
29
46
10
12
1.76
107247930--107247975
17
2.7
18
76
10
60
26
17
13
43
1.85
107255083--107255152
27
2.5
28
97
2
133
28
12
27
31
1.93
107263014--107263083
27
2.5
28
97
2
133
28
12
27
31
1.93
107274942--107275140
56
3.5
57
88
2
287
29
16
22
32
1.96
107281344--107281385
12
3.2
13
76
10
50
14
7
0
78
0.95
107281342--107281419
25
3.0
25
76
17
70
19
8
1
70
1.21
107290266--107290532
58
4.7
56
85
5
340
29
17
21
31
1.96
107292042--107292075
2
17.0
2
100
0
68
50
0
0
50
1.00
107292522--107292553
2
16.5
2
93
6
57
50
0
0
50
1.00
107294253--107294309
30
2.0
27
87
12
80
33
8
14
43
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107294312--107294367
26
2.2
26
96
0
103
30
5
26
37
1.79
107295966--107296077
27
4.2
26
85
7
134
17
23
22
36
1.95
107295966--107296086
54
2.2
54
85
2
163
17
24
23
34
1.96
107300929--107300984
26
2.2
26
100
0
112
30
7
26
35
1.83
107302578--107302689
27
4.2
26
83
7
125
18
24
21
35
1.95
107302581--107302687
54
2.0
54
85
3
144
19
24
19
36
1.95
107304340--107304368
5
5.8
5
100
0
58
58
0
0
41
0.98
107308117--107308239
26
4.8
26
89
2
196
27
21
21
28
1.99
107308289--107308363
20
3.8
20
93
6
120
36
18
9
36
1.83
107308289--107308344
11
5.5
11
75
16
66
33
19
10
35
1.87
107308289--107308362
9
7.5
10
74
17
66
35
18
9
36
1.84
107311794--107311895
43
2.4
42
86
6
134
24
17
24
33
1.96
107313916--107313963
25
1.9
25
86
0
69
33
25
16
25
1.96
107314006--107314068
19
3.3
19
93
6
110
34
9
20
34
1.85
107314010--107314064
11
5.5
11
71
20
57
36
10
20
32
1.87
107313999--107314064
20
3.3
20
93
4
116
34
10
21
33
1.88
107314113--107314257
25
6.0
24
88
7
197
28
20
22
28
1.98
107314451--107314514
31
2.1
31
93
0
110
37
15
23
23
1.93
107321987--107322034
25
1.9
25
86
0
69
33
25
16
25
1.96
107322082--107322137
11
5.5
11
71
16
57
35
12
19
32
1.89
107322071--107322137
20
3.3
20
93
0
116
34
11
20
32
1.90
107322186--107322330
25
6.0
24
89
7
197
28
19
22
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107322524--107322587
31
2.1
31
87
0
92
37
15
23
23
1.93
107325673--107325698
2
13.0
2
100
0
52
50
0
0
50
1.00
107325867--107326026
43
3.7
43
80
8
184
25
15
25
34
1.94
107325867--107326026
86
1.9
85
85
8
227
25
15
25
34
1.94
107331007--107331134
66
1.9
66
85
3
177
42
18
27
10
1.84
107332787--107332825
21
1.9
20
84
5
51
30
2
20
46
1.64
107333315--107333458
40
3.6
40
86
0
189
24
18
23
33
1.97
107338293--107338328
2
18.0
2
100
0
72
50
0
0
50
1.00
107366390--107366419
14
2.1
14
93
0
51
60
0
3
36
1.14
107366611--107366664
22
2.4
22
85
14
83
40
3
3
51
1.37
107367350--107367414
19
3.7
19
69
21
52
66
1
0
32
1.01
107374243--107374270
3
9.3
3
100
0
56
32
0
0
67
0.91
107374409--107374507
22
4.6
22
75
7
80
73
4
16
6
1.18
107377849--107377908
13
4.6
13
74
15
52
56
5
1
36
1.31
107381377--107381431
13
4.2
13
83
4
58
54
5
1
38
1.34
107382333--107382405
29
2.7
27
81
10
85
42
4
1
52
1.29
107382394--107382472
35
2.2
36
77
4
88
49
5
3
41
1.43
107387118--107387237
60
2.0
60
98
0
231
23
25
18
32
1.97
107388432--107388490
27
2.2
27
100
0
118
44
0
6
49
1.29
107397038--107397092
23
2.4
23
96
0
101
34
14
10
40
1.81
107404903--107404947
23
2.0
23
90
0
72
68
4
0
26
1.08
107404897--107404977
30
2.7
29
81
9
92
64
4
1
29
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107415152--107415215
32
2.0
32
100
0
128
40
12
15
31
1.85
107422756--107422812
16
3.6
16
69
9
53
17
0
26
56
1.41
107424986--107425207
46
4.8
46
81
9
254
31
27
18
22
1.97
107430031--107430078
20
2.4
20
100
0
96
16
35
25
22
1.95
107431713--107431753
20
2.1
20
86
4
57
41
14
12
31
1.83
107431844--107431947
47
2.2
47
87
0
163
44
19
14
22
1.86
107437300--107437385
33
2.6
33
96
0
154
22
32
32
12
1.91
107437908--107437948
21
2.1
18
86
13
55
75
0
14
9
1.04
107438987--107439019
6
5.5
6
92
0
57
18
21
15
45
1.85
107446605--107446649
21
2.1
21
84
8
56
0
26
0
73
0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425