Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  310  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96433286--96433460
80
2.2
81
85
3
237
25
24
25
24
2.00
96441623--96441846
40
5.6
40
82
6
265
26
25
22
25
2.00
96441623--96441846
123
1.8
119
84
3
304
26
25
22
25
2.00
96442442--96442469
2
14.0
2
100
0
56
50
0
0
50
1.00
96444623--96444777
78
2.0
78
93
2
267
33
14
25
25
1.95
96445450--96446211
44
16.9
44
73
10
466
30
17
21
29
1.96
96445731--96446149
226
1.9
227
87
2
628
30
17
21
30
1.96
96448857--96448993
23
5.8
23
75
12
102
22
21
18
37
1.94
96448879--96449003
45
2.7
46
79
12
130
22
23
18
36
1.95
96451945--96451974
8
3.8
8
90
0
51
50
0
10
40
1.36
96452618--96452691
29
2.6
29
89
4
105
25
16
32
25
1.96
96455847--96455995
80
1.9
80
81
2
183
22
30
24
22
1.99
96455888--96455995
40
2.7
38
85
8
128
21
29
25
23
1.99
96463964--96464112
80
1.9
80
81
2
183
22
30
24
22
1.99
96464005--96464112
40
2.7
38
85
8
128
21
29
25
23
1.99
96469264--96469412
80
1.9
80
81
2
183
22
30
24
22
1.99
96469305--96469412
40
2.7
38
85
8
128
21
29
25
23
1.99
96477380--96477528
80
1.9
80
81
2
183
22
30
24
22
1.99
96477421--96477528
40
2.7
38
85
8
128
21
29
25
23
1.99
96483841--96483873
16
1.9
18
88
11
52
18
12
18
51
1.76
96491378--96491410
16
1.9
18
88
11
52
18
12
18
51
1.76
96499456--96499563
53
2.1
51
82
3
126
23
12
2
61
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96499878--96499937
6
9.5
6
78
20
52
20
3
0
76
0.92
96499879--96499914
7
5.3
7
86
6
56
13
2
0
83
0.76
96499881--96499934
16
3.3
16
80
15
58
18
3
0
77
0.91
96499893--96499937
24
1.9
23
86
4
63
20
2
0
77
0.87
96502006--96502044
20
2.0
20
94
0
69
43
5
12
38
1.65
96511024--96511052
15
1.9
15
100
0
58
6
6
0
86
0.72
96511113--96511147
13
2.8
12
91
4
52
22
2
0
74
0.95
96511162--96511249
44
2.0
44
95
0
158
39
0
10
50
1.37
96511170--96511243
23
3.3
23
66
21
66
39
0
9
51
1.35
96511274--96511344
21
3.4
20
80
3
79
35
4
1
59
1.26
96511273--96511568
134
2.3
127
82
12
324
39
4
2
54
1.34
96511452--96511507
24
2.3
24
84
9
69
41
0
1
57
1.09
96511542--96511576
13
2.8
13
91
8
56
42
0
0
57
0.99
96511533--96511623
31
3.0
31
79
16
93
43
0
0
56
0.99
96511711--96511789
19
4.1
19
87
9
108
60
0
1
37
1.05
96511706--96511848
34
4.1
34
82
14
168
60
1
0
37
1.10
96511770--96511838
12
5.8
12
77
19
65
60
1
0
37
1.06
96511782--96511826
21
2.1
21
84
8
56
60
2
0
37
1.09
96511943--96511991
23
2.2
21
86
13
64
77
2
6
14
1.05
96517352--96517430
11
7.4
10
71
12
59
62
2
3
31
1.27
96517357--96517539
9
19.2
9
70
14
59
64
3
3
28
1.27
96517871--96517971
29
3.6
27
76
10
89
29
2
0
66
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96517871--96518027
10
16.6
9
68
16
86
31
3
2
63
1.24
96518052--96518108
29
2.0
29
92
0
96
45
14
17
22
1.84
96518203--96518237
1
35.0
1
100
0
70
0
0
0
100
0.00
96519681--96519734
27
1.9
27
85
7
72
46
11
16
25
1.80
96526078--96526125
19
2.6
19
80
9
55
35
2
14
47
1.56
96530815--96530862
19
2.6
19
80
9
55
35
2
14
47
1.56
96530882--96530964
43
2.0
43
90
4
134
28
7
13
50
1.68
96532719--96532750
12
2.6
13
85
14
50
0
18
0
81
0.70
96538974--96539016
17
2.6
16
82
7
50
39
2
0
58
1.11
96540281--96540337
19
3.1
19
82
7
64
57
5
0
36
1.21
96540339--96540376
19
2.0
19
89
0
58
57
2
0
39
1.12
96543203--96543249
24
2.0
24
83
8
60
46
6
31
14
1.70
96548467--96548496
15
2.0
15
100
0
60
40
0
6
53
1.27
96554884--96554915
16
2.0
16
100
0
64
25
12
6
56
1.59
96556236--96556478
85
2.9
83
78
11
246
43
10
13
32
1.78
96556174--96556478
82
3.7
83
77
10
268
44
11
12
31
1.77
96560717--96560910
39
4.9
39
89
1
262
25
30
20
23
1.98
96566724--96566760
13
2.5
16
79
20
53
64
0
5
29
1.15
96577425--96577450
13
2.0
13
100
0
52
23
38
23
15
1.92
96577491--96577538
25
1.9
25
82
0
60
18
29
18
33
1.95
96583114--96583229
41
3.1
41
59
29
94
31
18
28
21
1.97
96583082--96583244
71
2.3
71
98
1
319
34
17
28
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96583082--96583267
71
2.7
68
91
6
254
34
17
28
19
1.95
96590182--96590297
41
3.1
41
59
29
94
31
18
28
21
1.97
96590150--96590313
71
2.3
71
98
0
319
34
17
28
18
1.94
96593141--96593300
39
4.1
39
90
0
248
23
32
20
23
1.98
96599707--96599750
20
2.2
20
95
0
79
13
27
34
25
1.93
96609963--96610123
46
3.5
45
74
15
134
26
30
16
26
1.97
96609998--96610144
46
3.1
47
69
20
128
26
29
17
26
1.98
96612864--96612891
7
4.0
7
100
0
56
85
0
14
0
0.59
96624838--96624865
13
2.2
13
100
0
56
64
0
7
28
1.20
96625431--96625466
17
2.1
18
89
5
56
36
5
2
55
1.38
96628195--96628276
42
2.0
42
97
0
155
43
19
9
26
1.82
96628352--96628432
31
2.6
31
88
3
110
45
19
11
23
1.82
96628339--96628432
31
3.1
31
85
7
106
43
19
9
27
1.82
96630578--96630750
46
3.7
46
79
10
208
21
19
27
30
1.98
96630575--96630745
93
1.8
93
93
0
297
21
19
28
29
1.98
96638221--96638539
46
6.7
48
79
9
273
29
18
27
24
1.98
96638306--96638547
49
5.0
49
80
8
212
28
16
28
27
1.97
96642535--96642604
32
2.2
32
82
12
81
30
12
17
40
1.87
96642671--96642731
29
2.1
29
85
11
81
54
3
3
39
1.33
96642630--96642736
10
10.8
10
73
16
57
56
1
3
38
1.28
96642691--96642748
10
5.5
11
82
15
61
53
1
5
39
1.33
96644175--96644239
27
2.4
27
87
5
87
29
27
18
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96644909--96644962
26
2.1
26
100
0
108
35
11
27
25
1.90
96647336--96647379
21
2.0
22
83
12
56
27
6
18
47
1.73
96662557--96662724
40
4.2
40
80
12
175
23
21
28
26
1.99
96662557--96662724
80
2.1
79
86
4
230
23
21
28
26
1.99
96677826--96677856
8
3.8
8
91
8
53
25
0
0
74
0.82
96679729--96679849
60
2.0
60
83
3
154
35
17
23
23
1.95
96679961--96680089
67
1.9
67
84
3
170
25
17
31
26
1.97
96680211--96680255
20
2.1
23
88
12
69
57
8
11
22
1.60
96681189--96681270
41
2.0
41
95
0
146
26
17
21
34
1.95
96687425--96687476
27
2.0
26
84
3
68
17
26
21
34
1.95
96687406--96687571
65
2.5
66
90
6
259
17
27
23
31
1.97
96696612--96696671
27
2.3
26
85
2
75
21
23
20
35
1.96
96699328--96699376
23
2.2
22
82
10
55
30
0
22
46
1.52
96704821--96704986
40
4.2
40
82
2
183
25
27
21
25
1.99
96704821--96704986
80
2.1
79
83
7
203
25
27
21
25
1.99
96705686--96705731
17
2.5
19
74
22
53
34
23
17
23
1.96
96712700--96712869
40
4.3
40
83
2
191
25
27
21
25
1.99
96713568--96713613
17
2.5
19
74
22
53
34
23
17
23
1.96
96718066--96718167
29
3.5
29
97
0
186
28
25
16
29
1.97
96725991--96726027
18
2.1
18
100
0
74
51
5
5
37
1.48
96726658--96726693
2
18.0
2
100
0
72
50
0
0
50
1.00
96735091--96735139
24
2.0
25
92
4
82
16
4
20
59
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96737086--96737115
12
2.5
12
94
0
51
53
3
0
43
1.17
96743648--96743699
20
2.8
18
76
21
54
51
7
1
38
1.42
96752760--96752860
40
2.5
40
80
0
103
31
24
25
17
1.97
96752800--96752907
40
2.7
39
85
8
137
24
25
28
21
1.99
96752800--96752922
40
3.1
38
77
9
113
25
25
27
21
2.00
96759345--96759513
43
4.0
42
77
10
139
28
26
20
24
1.99
96759356--96759514
85
1.9
85
82
5
205
27
27
20
25
1.99
96767736--96767770
13
2.6
13
95
4
61
28
28
2
40
1.71
96770540--96770578
19
2.1
19
85
0
51
71
7
5
15
1.26
96771042--96771131
27
3.2
28
76
7
94
33
23
23
20
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425