genome.fa.s8.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  164  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49776990--49777018	14	2.0	15	93	6	51	27	0	20	51	1.47
49779454--49779641	40	4.7	40	91	3	308	25	21	27	25	1.99
49779454--49779664	80	2.7	79	86	7	304	26	21	27	25	2.00
49781410--49781580	43	4.0	42	74	11	152	25	17	26	30	1.97
49789663--49789741	29	2.7	29	86	5	106	27	32	15	24	1.95
49790840--49790877	19	2.1	18	85	9	51	13	18	2	65	1.37
49797456--49797534	29	2.7	29	86	5	106	27	32	15	24	1.95
49798634--49798671	19	2.1	18	85	9	51	13	18	2	65	1.37
49808988--49809041	18	2.8	20	84	13	62	37	3	0	59	1.15
49815469--49815571	29	3.6	29	87	0	143	25	33	15	26	1.95
49822650--49822751	46	2.2	47	87	5	145	35	14	24	25	1.94
49826948--49827043	46	2.1	47	88	5	142	34	14	23	27	1.94
49840118--49840240	46	2.7	45	83	8	160	26	19	30	22	1.98
49841626--49841783	68	2.3	68	97	0	298	24	30	14	31	1.95
49847968--49848015	25	1.9	25	86	0	69	33	25	16	25	1.96
49848058--49848116	20	3.0	20	90	4	95	33	11	20	33	1.89
49848166--49848307	24	6.0	24	90	5	200	28	22	21	26	1.99
49848166--49848308	71	2.0	71	87	5	209	29	22	21	26	1.99
49848498--49848560	31	2.1	31	90	3	101	36	15	23	23	1.94
49856027--49856074	25	1.9	25	86	0	69	33	25	16	25	1.96
49856117--49856157	20	2.0	20	90	0	64	34	14	17	34	1.90
49856207--49856325	24	5.0	24	88	5	170	28	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49856207--49856325	47	2.5	48	89	5	170	28	21	22	26	1.99
49856517--49856580	31	2.1	31	90	0	101	35	15	25	23	1.94
49864603--49864630	14	2.0	14	100	0	56	28	14	14	42	1.84
49864865--49865042	51	3.5	50	87	4	241	28	29	14	26	1.95
49865082--49865106	10	2.5	10	100	0	50	72	8	0	20	1.10
49872414--49872537	29	4.3	29	87	2	171	29	29	15	25	1.96
49872753--49872799	16	2.9	16	87	0	67	17	23	10	48	1.77
49879380--49879411	14	2.4	13	90	10	55	62	12	6	18	1.50
49883792--49883834	21	2.2	20	84	16	54	9	41	16	32	1.80
49889477--49889658	40	4.6	40	85	4	217	23	26	22	27	1.99
49897449--49897666	40	5.6	40	85	7	279	23	27	22	27	1.99
49912947--49913168	46	4.7	47	75	12	188	29	17	29	24	1.97
49912946--49913213	47	5.7	47	75	11	221	29	17	29	24	1.97
49912948--49913207	140	1.9	140	88	1	396	29	17	28	24	1.97
49917211--49917566	46	7.6	45	73	14	224	27	19	30	23	1.98
49917216--49917566	93	3.8	94	87	6	443	27	19	30	23	1.98
49917216--49917570	140	2.5	139	85	7	436	27	19	30	23	1.98
49921714--49921828	35	3.3	35	65	11	83	28	20	26	24	1.99
49921656--49921828	70	2.5	70	83	1	195	29	20	23	26	1.99
49922679--49922888	107	2.0	104	87	4	305	20	21	10	47	1.79
49923589--49923647	18	3.3	18	78	0	73	38	18	18	23	1.93
49923905--49923954	23	2.2	24	82	13	61	38	22	14	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49924005--49924105	27	3.8	26	86	2	121	19	17	21	40	1.91
49925854--49926039	91	2.0	91	95	0	336	26	30	11	31	1.91
49928019--49928182	71	2.3	71	100	0	328	18	28	17	35	1.94
49928019--49928216	71	2.8	70	91	3	258	20	28	17	33	1.95
49935595--49935758	71	2.3	71	100	0	328	18	28	17	35	1.94
49935595--49935792	71	2.8	70	91	3	258	20	28	17	33	1.95
49940024--49940164	60	2.4	59	83	9	171	25	19	26	27	1.99
49943691--49943729	18	2.1	19	85	4	53	7	23	2	66	1.30
49943744--49943784	12	3.4	12	86	0	55	14	24	0	60	1.34
49943735--49943784	24	2.1	24	84	0	64	18	26	0	56	1.42
49943858--49943914	5	11.0	5	75	20	55	1	17	3	77	1.00
49943848--49943914	16	4.3	15	80	14	73	1	20	2	74	1.03
49943858--49943919	21	3.0	21	75	15	58	1	16	4	77	1.02
49944839--49944883	23	2.0	23	90	0	72	15	2	8	73	1.18
49944839--49944883	12	3.9	11	85	8	63	15	2	8	73	1.18
49946135--49946193	25	2.4	25	94	0	100	27	18	15	38	1.91
49946147--49946203	25	2.5	23	86	11	73	29	21	12	36	1.90
49946594--49946662	19	3.5	19	67	11	57	28	17	27	26	1.97
49946597--49946682	41	2.1	41	95	0	154	27	15	29	27	1.96
49948093--49948208	27	4.3	27	78	8	112	20	18	18	42	1.90
49948163--49948247	27	3.2	26	80	11	84	27	15	20	37	1.92
49952494--49952594	28	3.5	30	82	6	118	29	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49952523--49952598	29	2.7	28	76	13	75	30	14	26	28	1.95
49960385--49960485	28	3.5	30	82	6	118	29	14	26	28	1.95
49960414--49960489	29	2.7	28	76	13	75	30	14	26	28	1.95
49964390--49964570	46	3.9	46	81	9	233	20	21	29	27	1.98
49964392--49964562	93	1.8	93	96	0	315	20	22	29	27	1.98
49967514--49967593	15	5.4	15	77	7	83	10	18	13	57	1.64
49967505--49967592	30	3.0	30	80	11	92	10	18	15	55	1.68
49969964--49970143	45	3.9	46	81	10	233	21	21	30	27	1.98
49969964--49970138	46	3.8	45	81	10	203	21	21	29	27	1.98
49974780--49974848	28	2.5	28	95	2	122	18	10	27	43	1.82
49981627--49981677	23	2.3	23	93	3	86	31	25	23	19	1.98
49983862--49983969	43	2.5	43	86	1	155	29	24	14	31	1.95
49992614--49992672	30	1.9	30	82	3	73	52	1	18	27	1.55
49995168--49995214	23	2.0	23	100	0	94	21	4	34	40	1.73
50002260--50002370	43	2.6	42	81	7	127	22	18	28	29	1.98
50002417--50002499	43	1.9	43	100	0	166	21	9	28	39	1.85
50003843--50003880	20	1.9	20	94	0	67	26	23	34	15	1.95
50005788--50005828	19	2.2	19	100	0	82	39	26	14	19	1.90
50013029--50013213	40	4.6	40	79	4	176	26	21	25	26	2.00
50013029--50013213	80	2.3	81	80	8	225	26	21	25	26	2.00
50017544--50017613	25	2.8	25	78	4	79	30	25	20	24	1.99
50020223--50020325	39	2.6	39	95	0	179	23	24	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50026593--50026663	24	2.9	25	75	12	67	35	18	23	22	1.96
50026621--50026689	24	2.7	26	86	4	88	31	17	24	26	1.97
50028279--50028332	22	2.4	23	90	3	83	16	29	22	31	1.96
50028511--50028581	25	2.8	25	78	0	79	40	5	11	42	1.64
50029667--50029727	20	3.0	20	70	13	54	37	4	11	45	1.62
50031900--50031940	20	2.0	20	100	0	82	36	14	9	39	1.79
50034161--50034249	38	2.3	38	82	3	99	28	20	13	38	1.90
50035891--50035956	30	2.3	28	82	12	80	50	6	3	40	1.43
50045330--50045455	46	2.7	46	95	0	216	21	22	26	29	1.99
50049818--50049851	12	2.8	12	95	0	59	29	14	11	44	1.81
50051219--50052107	4	225.5	4	79	5	941	25	7	24	42	1.81
50053420--50053484	33	2.0	33	90	6	105	58	3	0	38	1.14
50060030--50060089	18	3.4	17	80	15	68	53	1	1	43	1.20
50060030--50060099	35	2.0	34	81	10	79	54	1	2	41	1.24
50061465--50061506	21	2.0	21	90	0	66	52	4	4	38	1.44
50061720--50061907	9	20.7	9	66	16	61	63	2	4	29	1.26
50061781--50061836	17	3.2	17	72	20	53	62	0	3	33	1.12
50061727--50061823	29	3.4	29	70	20	78	61	1	6	30	1.27
50061721--50061825	27	3.8	25	69	22	68	63	1	5	28	1.27
50061739--50061920	65	2.8	65	78	10	160	64	1	4	29	1.23
50061778--50061867	36	2.5	34	77	16	92	62	1	4	32	1.22
50061821--50061885	29	2.2	30	81	13	82	60	3	3	33	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50061972--50062003	11	3.1	11	86	13	50	65	0	0	34	0.93
50062222--50062531	9	34.8	9	62	22	68	30	4	2	62	1.28
50062328--50062358	16	1.9	16	93	0	53	22	9	0	67	1.19
50062349--50062406	30	2.0	29	86	10	82	36	0	0	63	0.94
50062401--50062444	19	2.4	19	88	11	65	31	0	4	63	1.14
50062432--50062545	18	6.2	19	72	12	60	24	5	3	66	1.28
50062442--50062531	28	3.3	27	73	7	83	25	6	2	65	1.28
50063184--50063235	19	2.7	19	81	3	59	65	0	1	32	1.04
50063971--50064003	16	2.0	17	88	5	50	42	0	9	48	1.35
50067985--50068023	6	6.3	6	90	3	60	15	64	0	20	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425