genome.fa.s8.2.7.7.80.10.50.1000.302.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  302  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93866208--93866287	27	3.0	27	90	0	124	30	8	20	41	1.82
93866183--93866309	54	2.4	54	80	6	141	27	9	19	43	1.82
93866209--93866321	27	4.1	28	82	5	117	28	7	23	41	1.80
93866302--93866620	27	11.8	27	84	3	365	41	8	21	29	1.82
93866302--93866620	54	5.9	54	88	0	424	41	8	21	29	1.82
93866302--93866620	81	3.9	82	86	2	403	41	8	21	29	1.82
93866626--93866715	27	3.3	27	85	3	119	32	10	17	40	1.83
93866609--93866715	54	2.0	54	81	7	128	30	10	20	38	1.86
93866626--93866730	27	3.9	27	79	9	90	34	9	17	39	1.82
93868000--93868030	16	1.9	16	93	0	53	29	6	22	41	1.78
93868180--93868404	40	5.6	40	81	2	263	26	24	26	23	2.00
93868180--93868404	120	1.9	121	84	4	303	26	24	26	23	2.00
93872978--93873007	12	2.5	12	100	0	60	26	40	26	6	1.81
93873312--93873393	38	2.2	38	93	4	139	31	3	15	48	1.63
93876733--93876790	29	2.0	29	86	6	82	32	15	20	31	1.94
93883183--93883213	12	2.7	12	95	5	55	58	0	0	41	0.98
93883248--93883295	14	3.6	13	81	18	55	54	8	0	37	1.31
93885125--93885152	13	2.2	13	100	0	56	28	0	14	57	1.38
93886577--93886820	40	6.2	40	91	2	379	25	21	25	28	1.99
93893290--93893317	13	2.2	13	100	0	56	28	0	14	57	1.38
93894735--93894979	40	6.2	40	91	2	397	24	21	25	28	1.99
93894719--93894979	120	2.2	119	93	2	445	25	21	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93896351--93896513	77	2.1	78	84	7	208	25	26	22	25	2.00
93896351--93896513	39	4.2	38	80	10	161	25	26	22	25	2.00
93904281--93904447	40	4.2	40	82	2	185	25	27	21	25	1.99
93904281--93904447	80	2.1	79	83	7	205	25	27	21	25	1.99
93905272--93905317	17	2.5	19	74	22	53	34	23	17	23	1.96
93907876--93907951	39	1.9	39	89	0	116	30	5	19	44	1.73
93907879--93907973	39	2.4	39	79	6	111	32	4	20	43	1.71
93910087--93910284	71	2.8	70	92	3	294	33	17	28	20	1.95
93910153--93910270	41	3.1	41	60	28	98	32	17	28	21	1.96
93910121--93910284	71	2.3	71	100	0	328	35	17	28	18	1.94
93917654--93917851	71	2.8	70	92	3	294	33	17	28	20	1.95
93917720--93917837	41	3.1	41	60	28	98	32	17	28	21	1.96
93917688--93917851	71	2.3	71	100	0	328	35	17	28	18	1.94
93921214--93921342	46	2.8	46	96	0	231	19	22	29	28	1.98
93923251--93923301	21	2.4	21	96	0	93	11	21	27	39	1.88
93930460--93930533	23	3.3	22	78	12	69	27	25	14	32	1.95
93930469--93930572	23	4.4	23	78	12	88	28	25	16	29	1.97
93933179--93933337	45	3.6	45	92	0	257	23	20	27	28	1.99
93945472--93945510	18	2.1	18	85	4	51	33	15	5	46	1.68
93951346--93951522	56	3.2	56	96	0	318	29	31	18	20	1.96
93951730--93951769	16	2.5	16	95	0	71	32	22	35	10	1.87
93951694--93951812	59	2.0	59	86	0	166	34	28	24	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93951825--93951985	40	4.0	40	93	0	268	26	31	22	19	1.98
93953253--93953328	25	3.2	25	87	7	106	18	48	10	22	1.78
93953751--93953844	3	31.3	3	72	19	65	28	3	1	67	1.13
93953751--93953848	18	5.6	18	78	15	91	29	3	1	66	1.13
93954172--93954214	3	14.3	3	100	0	86	32	0	0	67	0.91
93954246--93954280	15	2.2	17	90	10	56	40	0	2	57	1.14
93966129--93966401	44	6.2	44	71	8	162	37	20	20	20	1.94
93966139--93966395	87	2.9	87	85	1	327	37	21	20	20	1.94
93966870--93966945	25	3.2	25	87	7	106	18	48	10	22	1.78
93967366--93967455	19	4.8	19	76	18	73	25	3	1	70	1.10
93967368--93967462	3	32.3	3	69	21	60	27	3	1	68	1.11
93970285--93970384	48	2.1	48	98	1	193	39	10	10	41	1.72
93975091--93975214	46	2.7	45	78	12	137	23	29	19	28	1.98
93977331--93977440	33	3.2	33	63	16	80	29	20	26	24	1.99
93977330--93977489	69	2.3	69	91	0	266	28	18	27	25	1.98
93985177--93985286	26	4.2	26	94	0	166	34	5	22	37	1.78
93986749--93986801	26	2.0	26	82	7	63	37	20	16	24	1.93
93987049--93987333	137	2.1	136	94	1	500	24	18	25	31	1.97
93988591--93988625	12	2.9	12	100	0	70	8	22	51	17	1.72
93993499--93993607	26	4.2	26	92	1	157	35	5	22	36	1.77
93998265--93998431	40	4.2	40	80	6	176	26	23	26	23	2.00
94002174--94002206	14	2.5	14	90	9	52	24	12	9	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94006333--94006406	31	2.4	31	81	4	87	28	14	17	39	1.89
94009500--94009817	48	6.6	48	84	2	264	29	18	28	23	1.98
94009497--94009768	96	2.8	96	85	1	350	29	16	28	25	1.97
94009500--94009815	96	3.3	93	78	10	318	29	18	28	24	1.98
94012195--94012419	124	1.8	124	86	1	326	30	11	23	35	1.89
94012376--94012543	80	2.1	80	80	4	187	25	23	26	25	2.00
94028017--94028151	46	2.9	48	80	11	172	22	20	27	28	1.99
94028292--94028372	40	2.0	40	100	0	162	25	12	19	41	1.87
94029698--94029750	15	3.7	15	80	5	56	7	16	18	56	1.63
94031663--94031838	46	3.8	46	78	10	196	20	21	29	28	1.98
94031660--94031831	93	1.8	93	92	0	290	20	22	29	27	1.98
94038499--94038593	24	4.0	24	85	10	124	26	24	21	28	1.99
94038499--94038592	47	2.0	49	85	12	133	26	24	21	27	1.99
94038644--94038703	20	3.0	20	85	0	93	31	18	11	38	1.87
94038746--94038793	25	1.9	25	86	0	69	25	16	25	33	1.96
94042805--94042985	100	1.8	100	96	0	335	26	18	24	29	1.98
94042810--94042984	49	3.5	49	78	3	224	26	18	25	29	1.98
94044938--94045443	251	2.0	250	95	0	904	35	13	19	31	1.91
94046193--94046244	15	3.5	15	73	26	56	17	9	11	61	1.55
94048714--94048895	100	1.8	100	96	0	337	25	17	26	31	1.97
94048719--94048893	49	3.5	49	82	3	233	25	16	26	31	1.97
94053694--94053737	13	3.1	13	77	22	52	6	22	50	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94055474--94055518	20	2.4	19	92	7	74	0	35	0	64	0.94
94057363--94057419	22	2.6	22	85	0	69	31	22	19	26	1.98
94061175--94061251	39	2.0	39	94	0	136	33	14	6	45	1.70
94066893--94067076	40	4.6	40	78	4	147	22	24	29	23	1.99
94069003--94069042	19	2.1	19	100	0	80	42	10	0	47	1.37
94080617--94080727	54	2.1	53	89	1	168	17	24	21	36	1.94
94080617--94080727	27	4.2	26	87	5	150	17	24	21	36	1.94
94087800--94088024	40	5.6	40	82	2	281	24	26	23	25	2.00
94087764--94088024	80	3.3	80	82	3	294	24	26	23	26	2.00
94092329--94092392	31	2.1	31	87	0	92	25	25	14	35	1.93
94092584--94092679	24	4.0	24	89	4	131	26	20	21	31	1.98
94092729--94092789	20	3.0	20	92	0	104	32	21	11	34	1.89
94092832--94092879	25	1.9	25	86	0	69	25	16	25	33	1.96
94096140--94096321	40	4.6	40	82	4	172	23	26	21	28	1.99
94104249--94104431	40	4.6	40	83	3	181	23	26	22	27	1.99
94107930--94108040	27	4.1	27	82	5	136	17	22	21	38	1.93
94107930--94108040	54	2.1	53	86	1	150	17	22	21	38	1.93
94115114--94115339	40	5.6	40	81	4	267	23	26	23	26	2.00
94115077--94115339	80	3.3	79	80	6	280	23	26	23	26	2.00
94115114--94115341	120	1.9	121	85	4	318	24	26	23	26	2.00
94117083--94117163	40	2.0	40	100	0	162	25	24	24	24	2.00
94119274--94119380	27	4.0	26	89	6	151	16	24	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94119274--94119380	54	2.0	53	90	1	169	16	24	21	37	1.94
94128439--94128464	9	2.9	9	100	0	52	42	23	23	11	1.86
94135548--94135583	18	2.0	18	100	0	72	38	0	16	44	1.48
94141614--94141785	93	1.8	93	96	0	317	27	30	22	20	1.98
94141606--94141781	46	3.8	46	81	10	232	28	29	21	20	1.98
94145073--94145258	80	2.3	80	79	10	202	26	27	20	24	1.99
94145073--94145258	40	4.7	40	82	7	175	26	27	20	24	1.99
94151168--94151211	7	6.0	7	81	7	52	56	2	4	36	1.32
94151476--94151563	44	2.0	44	100	0	176	43	4	20	31	1.72
94155956--94156001	23	1.9	23	86	8	65	63	2	2	32	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425