genome.fa.s8.2.7.7.80.10.50.1000.336.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  336  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104303987--104304025	20	2.0	19	85	5	51	28	20	5	46	1.72
104311365--104311549	28	6.6	28	83	0	226	25	31	15	27	1.96
104311360--104311549	56	3.4	56	88	0	263	25	31	15	27	1.96
104315690--104315883	26	7.5	26	76	0	163	36	26	14	23	1.93
104315689--104315904	52	4.2	52	73	8	161	35	25	15	23	1.94
104315706--104315904	26	7.7	26	72	8	129	35	25	15	24	1.94
104322027--104322079	21	2.4	21	78	6	52	35	5	1	56	1.34
104326480--104326670	32	6.0	32	89	3	260	39	20	13	27	1.89
104326436--104326670	64	3.6	65	83	4	271	35	20	13	30	1.92
104326459--104326669	96	2.2	96	86	1	289	37	20	12	29	1.90
104334101--104334240	32	4.3	32	89	4	192	31	24	12	31	1.93
104336304--104336360	21	2.6	21	88	5	78	29	29	17	22	1.97
104353742--104353785	2	22.0	2	100	0	88	0	50	0	50	1.00
104354567--104354633	27	2.4	28	82	12	84	41	1	0	56	1.08
104354590--104354656	9	7.4	9	71	17	50	29	1	1	67	1.09
104354984--104355009	12	2.2	12	100	0	52	76	0	23	0	0.78
104354981--104355010	15	2.0	15	93	0	51	76	0	23	0	0.78
104355658--104355738	40	2.0	40	97	0	153	18	18	29	33	1.95
104356138--104356492	178	2.0	175	94	1	620	27	27	4	40	1.75
104356469--104356525	20	3.0	20	74	10	55	19	26	0	54	1.44
104358093--104358152	26	2.5	23	79	15	59	30	3	13	53	1.56
104358113--104358159	24	2.0	24	83	8	60	34	4	8	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104359237--104359354	41	3.1	41	60	28	98	32	17	28	21	1.96
104359205--104359368	71	2.3	71	100	0	328	35	17	28	18	1.94
104361179--104361256	33	2.5	33	83	8	92	37	1	0	61	1.04
104361208--104361259	22	2.4	21	80	6	59	38	1	0	59	1.08
104363893--104363926	16	2.1	16	100	0	68	32	26	17	23	1.97
104366925--104367096	93	1.8	93	90	4	276	28	28	20	22	1.99
104366917--104367091	46	3.8	45	76	10	183	29	28	20	22	1.98
104366968--104367111	46	3.1	46	71	16	127	29	28	19	22	1.98
104371032--104371110	25	3.3	25	64	10	74	32	27	5	34	1.79
104370982--104371351	49	7.7	49	93	1	554	27	29	9	33	1.88
104374079--104374167	30	3.0	30	79	11	94	57	14	16	11	1.65
104374079--104374158	15	5.4	15	80	7	92	58	13	17	10	1.62
104374090--104374167	15	5.2	14	75	14	59	56	14	16	12	1.68
104376513--104376551	18	2.2	18	100	0	78	48	23	5	23	1.70
104377127--104377387	93	2.8	92	92	0	432	27	29	19	22	1.98
104377116--104377383	46	5.8	46	74	12	244	28	28	19	22	1.98
104380401--104380503	29	3.6	29	90	0	152	24	33	15	27	1.95
104395829--104396069	47	5.1	47	91	0	365	32	10	29	26	1.90
104395876--104395954	25	3.3	25	65	22	69	32	10	27	29	1.89
104395858--104395976	22	5.1	22	63	25	66	32	13	29	24	1.93
104396040--104396175	50	2.8	48	83	8	193	36	7	26	30	1.84
104395858--104396122	141	1.9	139	83	6	329	33	11	28	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104396034--104396196	50	3.3	50	78	14	183	33	7	28	30	1.86
104396321--104396429	37	2.9	37	88	0	164	25	20	28	25	1.99
104402930--104403038	40	2.8	39	85	1	146	26	23	25	23	2.00
104402930--104403078	40	3.8	39	80	7	133	26	22	26	24	2.00
104406676--104407226	272	2.0	272	94	0	958	37	7	20	34	1.82
104416909--104416942	7	4.9	7	96	0	50	14	50	0	35	1.44
104420539--104420608	27	2.6	27	93	2	113	30	28	14	27	1.95
104429341--104429381	7	5.9	7	94	0	73	14	53	0	31	1.41
104429340--104429388	21	2.3	21	85	0	71	18	48	0	32	1.48
104437582--104437646	34	2.0	34	81	6	80	32	26	15	26	1.95
104439493--104439576	26	3.2	26	96	0	150	36	25	4	33	1.77
104442213--104442311	49	2.0	49	86	0	135	29	20	21	29	1.98
104445503--104445539	8	4.6	8	93	0	56	48	21	24	5	1.71
104445952--104446067	27	4.3	27	82	3	126	17	25	22	35	1.95
104445955--104446067	54	2.1	54	86	3	156	16	25	22	35	1.95
104450836--104450967	40	3.3	40	84	2	158	33	25	15	25	1.95
104452314--104452571	86	3.0	88	78	6	240	41	20	15	22	1.90
104452405--104452560	43	3.6	43	77	1	161	39	21	15	23	1.91
104455384--104455559	93	1.9	93	91	0	289	32	13	11	42	1.80
104456513--104456577	32	2.0	32	96	0	103	32	6	23	38	1.79
104459720--104459750	12	2.6	12	100	0	62	9	25	51	12	1.70
104464544--104464606	30	2.0	31	93	6	110	31	6	22	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104466073--104466125	26	2.0	26	85	7	72	37	22	15	24	1.92
104467431--104467495	32	2.0	32	96	0	121	32	6	23	38	1.79
104468975--104469027	26	2.0	26	85	7	72	37	22	15	24	1.92
104470631--104470661	12	2.6	12	100	0	62	9	25	51	12	1.70
104475492--104475555	31	2.0	32	93	3	112	32	6	21	39	1.79
104477038--104477086	25	2.0	25	84	8	64	38	20	16	24	1.92
104483462--104483530	34	2.0	34	94	0	120	40	17	11	30	1.85
104486850--104486936	44	2.0	43	86	6	122	33	16	11	39	1.84
104487944--104487988	24	1.9	23	100	0	81	33	11	0	55	1.35
104497274--104497318	20	2.2	21	84	4	56	48	24	2	24	1.62
104497333--104497386	13	4.1	13	95	4	99	22	7	22	48	1.75
104497333--104497387	27	2.0	27	100	0	110	21	7	21	49	1.74
104499052--104499190	39	3.4	42	77	8	117	31	24	17	25	1.97
104499033--104499190	42	3.8	40	76	5	138	31	25	18	25	1.98
104499593--104499618	9	2.9	9	100	0	52	65	23	0	11	1.25
104505647--104505752	26	4.2	26	90	4	171	36	23	6	33	1.81
104505647--104505752	50	2.1	52	92	3	180	36	23	6	33	1.81
104512649--104512756	26	4.2	26	88	4	164	36	24	6	33	1.81
104523076--104523139	31	2.1	31	90	0	101	25	23	15	35	1.94
104523333--104523525	25	8.0	24	84	6	196	27	23	20	27	1.99
104523360--104523520	50	3.3	48	88	5	218	29	24	21	24	1.99
104523571--104523654	20	4.2	20	93	0	141	33	21	10	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104523583--104523655	9	7.4	9	71	17	56	35	20	9	34	1.85
104523576--104523630	11	5.4	11	70	16	55	30	20	12	36	1.90
104523577--104523646	15	5.0	14	68	28	51	32	20	12	34	1.90
104523698--104523745	25	1.9	25	91	0	78	25	14	25	35	1.94
104524910--104524997	27	3.3	27	88	3	124	19	25	20	35	1.96
104525133--104525265	27	4.9	27	80	7	146	30	6	20	42	1.78
104525056--104525306	27	9.2	27	74	12	131	32	7	19	40	1.79
104525137--104525293	81	1.9	81	83	5	201	31	6	21	40	1.78
104525258--104525532	27	9.8	27	77	9	192	39	8	23	28	1.83
104525347--104525427	37	2.2	38	86	2	110	38	7	30	23	1.82
104525330--104525455	64	2.0	64	87	0	180	38	7	26	26	1.82
104525302--104525484	91	2.0	91	85	0	249	39	8	25	26	1.83
104525266--104525511	118	2.1	118	83	2	305	40	8	23	27	1.83
104525258--104525532	145	1.9	145	88	0	415	39	8	23	28	1.83
104525393--104525559	54	3.1	54	78	0	190	37	8	25	29	1.85
104530345--104530369	13	1.9	13	100	0	50	16	36	40	8	1.77
104531937--104531981	6	7.3	6	80	5	54	20	4	0	75	0.97
104531937--104531983	18	2.6	18	80	16	60	21	4	0	74	0.99
104540569--104540613	23	2.0	23	82	8	56	37	8	13	40	1.76
104548760--104548808	17	2.9	17	81	0	53	65	0	4	30	1.11
104551853--104551909	15	3.5	15	71	17	51	49	1	1	47	1.22
104552278--104552350	33	2.2	33	85	7	96	50	17	5	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104553583--104553612	2	15.0	2	100	0	60	50	0	0	50	1.00
104571849--104571888	21	2.0	21	90	5	64	10	37	32	20	1.85
104579924--104580110	71	2.7	68	93	5	281	18	28	18	34	1.95
104579947--104580110	71	2.3	71	100	0	328	18	28	17	35	1.94
104579947--104580144	71	2.8	70	92	3	276	20	28	17	33	1.95
104587495--104587681	71	2.7	68	93	5	281	18	28	18	34	1.95
104587518--104587681	71	2.3	71	100	0	328	18	28	17	35	1.94
104587518--104587715	71	2.8	70	92	3	276	20	28	17	33	1.95
104590938--104591164	113	2.0	113	89	3	350	26	17	13	43	1.85
104599125--104599174	26	2.0	24	88	7	73	64	6	0	30	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425