genome.fa.s8.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  176  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53340917--53341452	27	19.8	27	84	0	586	26	21	18	33	1.96
53349368--53349491	50	2.4	51	78	6	135	35	12	13	37	1.84
53349904--53350024	42	2.9	42	77	2	125	25	18	24	31	1.97
53349907--53350024	43	2.8	42	74	7	112	26	17	24	31	1.97
53351906--53351953	25	1.9	25	86	0	69	31	22	16	29	1.96
53351990--53352037	11	4.6	11	80	12	57	35	14	18	31	1.91
53352084--53352155	26	2.8	26	89	2	101	26	23	22	27	1.99
53352094--53352168	26	2.9	26	81	13	84	26	22	21	29	1.99
53352375--53352458	31	2.7	30	83	1	105	33	17	25	23	1.97
53355321--53355421	28	3.5	28	86	6	114	29	13	26	29	1.94
53363242--53363342	28	3.5	28	86	6	114	29	13	26	29	1.94
53373330--53373510	40	4.6	40	87	2	240	23	18	30	27	1.98
53376601--53376648	25	1.9	25	86	0	69	31	22	16	29	1.96
53376679--53376732	11	5.4	10	78	12	58	35	11	18	35	1.86
53376778--53376863	26	3.4	25	82	9	95	29	20	22	27	1.99
53380532--53380584	15	3.5	15	84	5	72	11	15	13	60	1.59
53380528--53380584	30	1.9	30	89	7	89	10	14	17	57	1.64
53383883--53383908	9	2.9	9	100	0	52	42	23	0	34	1.54
53383883--53383924	5	8.6	5	80	15	52	38	21	4	35	1.75
53389641--53389682	18	2.4	17	84	15	50	76	2	16	4	1.07
53389642--53389699	20	3.0	19	76	19	57	74	3	18	3	1.11
53391417--53391497	39	2.1	39	92	0	135	28	8	14	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53391526--53391642	53	2.3	52	86	4	157	34	15	13	36	1.87
53393782--53393844	24	2.6	24	100	0	126	20	17	26	34	1.95
53398619--53398654	2	18.0	2	88	0	54	47	2	0	50	1.15
53398617--53398675	10	5.9	10	76	7	57	47	6	0	45	1.29
53402272--53402341	27	2.5	28	88	2	106	28	14	25	31	1.95
53402272--53402353	27	3.0	27	80	8	103	29	13	23	34	1.93
53410348--53410417	27	2.5	28	88	2	106	28	14	25	31	1.95
53410348--53410429	27	3.0	27	80	8	103	29	13	23	34	1.93
53413492--53413532	20	2.0	20	95	0	73	21	36	12	29	1.90
53427000--53427075	38	2.0	38	97	0	143	46	21	3	28	1.69
53430647--53430740	43	2.2	43	100	0	188	32	23	12	30	1.92
53432407--53432467	31	2.0	31	93	0	104	24	26	16	32	1.96
53432680--53432845	23	7.1	23	89	5	244	28	21	21	27	1.99
53432680--53432846	47	3.6	47	93	2	275	28	21	21	28	1.99
53432904--53432960	9	5.9	9	73	15	51	35	21	8	35	1.84
53432892--53432962	20	3.5	20	94	0	124	32	21	11	35	1.89
53432897--53432951	11	5.4	11	70	16	55	30	20	12	36	1.90
53432999--53433046	25	1.9	25	86	0	69	25	16	25	33	1.96
53440309--53440347	19	2.1	19	85	0	51	71	7	5	15	1.26
53440818--53440899	28	2.9	28	85	3	112	34	21	21	21	1.97
53441006--53441070	28	2.3	28	86	0	85	30	6	27	35	1.81
53445811--53445997	71	2.7	68	93	5	281	18	28	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53445834--53445997	71	2.3	71	100	0	328	18	28	17	35	1.94
53445834--53446031	71	2.8	70	92	3	276	20	28	17	33	1.95
53453379--53453565	71	2.7	68	93	5	281	18	28	18	34	1.95
53453402--53453565	71	2.3	71	100	0	328	18	28	17	35	1.94
53453402--53453599	71	2.8	70	92	3	276	20	28	17	33	1.95
53456861--53456885	13	1.9	13	100	0	50	48	8	0	44	1.32
53458262--53458402	40	3.5	40	84	4	176	26	15	22	35	1.94
53464989--53465090	51	2.0	51	100	0	204	23	13	31	31	1.93
53465701--53465817	34	3.5	32	71	13	92	29	24	23	22	1.99
53465703--53465793	34	2.7	34	77	6	105	32	24	21	20	1.98
53466916--53467028	38	3.0	37	92	5	181	22	21	29	27	1.99
53466916--53467065	38	3.9	38	85	4	142	21	22	30	26	1.99
53473533--53473656	38	3.2	39	91	3	198	21	21	29	27	1.99
53473630--53473714	39	2.2	39	80	4	91	21	24	28	25	1.99
53473533--53473689	77	2.0	77	80	7	176	22	22	28	27	1.99
53473589--53473725	38	3.6	38	76	9	102	21	23	28	27	1.99
53474531--53474578	23	2.1	23	85	14	64	41	16	14	27	1.87
53474667--53474767	27	3.7	27	93	0	157	34	16	17	30	1.93
53478731--53478897	40	4.2	39	84	6	203	23	21	28	26	1.99
53478731--53478897	79	2.1	79	86	4	230	23	21	28	26	1.99
53487698--53487907	40	5.2	40	87	2	305	25	24	28	21	1.99
53493850--53493897	14	3.4	14	85	0	60	18	31	6	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53494257--53494295	11	3.7	11	86	6	55	79	5	5	10	1.04
53499520--53499559	19	2.1	19	86	9	55	27	35	15	22	1.94
53500800--53500847	14	3.4	14	85	0	60	18	31	6	43	1.75
53502018--53502154	46	3.0	46	92	0	211	24	31	9	34	1.88
53502128--53502596	47	10.0	47	91	0	706	25	29	12	33	1.92
53502168--53502855	141	4.7	141	81	10	819	25	28	11	34	1.91
53502312--53502753	47	10.2	39	72	19	120	24	28	12	33	1.92
53502525--53502663	67	2.1	67	95	0	251	25	28	11	34	1.91
53502436--53502757	161	2.0	161	93	0	554	24	28	12	34	1.92
53502483--53502710	114	2.0	114	93	0	393	25	27	12	35	1.91
53502389--53502804	208	2.0	208	93	0	715	24	28	12	34	1.92
53502597--53502855	47	5.5	47	95	0	437	25	28	11	35	1.90
53502614--53502689	22	3.3	22	65	28	59	25	30	13	31	1.93
53502342--53502826	255	1.9	255	97	0	925	24	28	12	34	1.92
53502298--53502855	302	1.8	302	94	0	999	25	28	12	34	1.91
53502838--53502955	58	2.0	58	100	0	236	43	21	1	33	1.63
53511239--53511326	28	3.1	28	88	0	122	30	31	13	23	1.93
53511310--53511403	40	2.3	40	92	0	152	36	28	13	21	1.92
53511307--53511412	40	2.6	39	82	8	133	34	29	14	21	1.93
53516458--53516489	15	2.3	15	89	10	50	40	18	0	40	1.51
53517120--53517163	16	2.8	17	83	13	58	40	22	2	34	1.67
53518094--53518132	11	3.2	12	89	7	53	41	20	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53527655--53527879	40	5.6	40	82	6	251	25	24	27	23	2.00
53527655--53527915	80	3.3	80	83	3	303	25	23	26	24	2.00
53527655--53527915	120	2.2	120	82	6	316	25	23	26	24	2.00
53534992--53535031	7	5.3	7	91	8	53	57	0	0	42	0.98
53534995--53535034	20	2.1	19	90	4	62	62	0	0	37	0.95
53535659--53535705	19	2.4	19	76	20	51	36	23	4	36	1.75
53539484--53539706	46	4.8	46	76	17	194	24	28	18	28	1.98
53542967--53543151	40	4.6	40	80	7	214	25	22	27	25	2.00
53542967--53543151	80	2.3	81	85	4	241	25	22	27	25	2.00
53546275--53546317	17	2.5	17	96	0	77	76	0	20	2	0.89
53547559--53547799	43	5.6	43	93	0	356	27	15	24	32	1.95
53549024--53549124	42	2.4	43	81	6	116	29	23	18	27	1.98
53562869--53562905	14	2.7	14	95	4	67	10	8	8	72	1.27
53562868--53562904	13	2.6	15	87	12	60	10	5	8	75	1.17
53566583--53566646	33	1.9	33	83	0	83	21	26	23	28	1.99
53569609--53569680	27	2.7	27	84	0	90	38	20	13	26	1.90
53569663--53569805	27	5.6	27	75	12	131	41	22	8	27	1.82
53569702--53569808	54	2.0	54	88	0	160	39	21	9	29	1.85
53569789--53569903	27	4.3	27	86	1	160	35	15	20	28	1.93
53571413--53571502	40	2.2	40	88	0	126	35	24	16	23	1.95
53575549--53575645	30	3.2	30	71	8	90	27	15	28	27	1.96
53577771--53577951	40	4.6	40	82	4	197	23	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53585748--53585927	40	4.6	40	80	6	188	23	26	24	25	2.00
53589054--53589136	30	2.7	30	80	9	80	13	20	2	63	1.40
53589087--53589142	18	3.1	18	76	5	51	7	17	5	69	1.31
53589112--53589136	12	2.1	12	100	0	50	8	16	0	76	1.02
53589205--53589267	5	12.0	5	78	21	51	4	17	3	74	1.12
53591327--53591386	17	3.5	17	72	17	52	28	30	8	33	1.86
53594090--53594172	30	2.7	30	81	9	89	13	21	1	63	1.35
53594123--53594178	18	3.1	18	76	5	51	7	19	3	69	1.27
53594148--53594172	12	2.1	12	100	0	50	8	16	0	76	1.02
53594175--53594205	12	2.6	12	100	0	62	25	16	12	45	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425