Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  341  of  425  ( 50925 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105614514--105614564
25
2.0
25
100
0
102
35
3
7
52
1.49
105619321--105619376
24
2.3
24
76
11
69
44
0
1
53
1.11
105625207--105625264
30
1.9
30
89
0
89
43
3
22
31
1.70
105629538--105629619
20
4.1
20
78
6
85
45
6
17
31
1.72
105631014--105631224
49
4.6
46
80
11
154
29
26
14
29
1.95
105631053--105631224
49
3.6
48
83
9
176
31
26
13
28
1.94
105631246--105631394
31
4.8
31
86
3
201
27
24
18
28
1.98
105631370--105631498
50
2.5
51
82
2
152
27
22
13
35
1.92
105633408--105633463
25
2.2
25
100
0
112
39
21
0
39
1.54
105634646--105634676
13
2.4
13
100
0
62
35
22
6
35
1.80
105636514--105636583
27
2.6
27
95
2
122
30
27
14
28
1.95
105640633--105640803
74
2.4
73
80
9
183
35
23
10
30
1.89
105640639--105640803
35
4.6
35
81
9
172
34
24
10
30
1.89
105642550--105642587
15
2.4
16
86
4
51
28
10
2
57
1.45
105643403--105643436
2
17.0
2
100
0
68
50
0
0
50
1.00
105643636--105643669
17
1.9
17
88
5
50
55
14
11
17
1.68
105644784--105644889
40
2.6
40
80
5
124
27
27
20
24
1.99
105644745--105644892
40
3.7
40
73
13
117
27
26
21
24
1.99
105652261--105652360
40
2.5
40
83
0
119
25
30
22
23
1.99
105657074--105657104
2
15.5
2
100
0
62
51
0
0
48
1.00
105657377--105657516
69
2.0
70
98
1
273
58
10
5
25
1.52
105658971--105659888
132
6.9
132
87
2
1162
26
22
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105659300--105659487
44
4.3
43
67
8
126
25
21
23
30
1.99
105658971--105659889
397
2.3
395
85
1
1214
26
22
20
30
1.98
105664341--105664834
245
2.0
245
94
0
871
28
22
14
33
1.94
105666062--105666389
177
1.9
177
85
1
460
32
16
23
27
1.96
105667591--105667660
28
2.5
29
84
6
83
28
5
4
61
1.38
105667684--105667775
12
8.0
11
82
8
51
31
3
0
65
1.09
105667717--105667778
3
21.0
3
96
3
117
33
0
0
66
0.92
105670525--105670666
58
2.5
55
82
12
157
44
2
2
50
1.28
105670835--105670886
16
3.2
16
83
0
68
30
17
3
48
1.65
105673045--105673137
31
3.0
31
85
7
109
50
0
1
48
1.07
105675964--105676021
30
1.9
30
100
0
116
25
5
13
55
1.59
105676099--105676147
18
2.7
18
75
15
55
28
0
8
63
1.23
105679022--105679062
22
2.0
20
85
9
55
65
7
0
26
1.18
105680326--105680385
29
2.1
29
100
0
120
33
3
10
53
1.51
105680388--105680450
30
2.1
30
93
0
108
23
3
14
58
1.50
105681955--105681979
5
5.0
5
100
0
50
80
0
0
20
0.72
105690106--105690158
24
2.2
24
96
0
97
49
33
0
16
1.47
105692317--105692614
127
2.3
125
80
6
314
28
16
18
36
1.93
105693706--105693745
20
2.0
20
95
0
71
30
20
37
12
1.89
105694898--105694951
27
2.0
27
88
0
81
50
14
5
29
1.66
105699898--105699923
8
3.2
8
100
0
52
61
0
38
0
0.96
105700181--105700210
16
1.9
16
93
6
53
30
0
0
70
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105700779--105700812
2
17.0
2
100
0
68
0
50
0
50
1.00
105707533--105707561
1
29.0
1
100
0
58
100
0
0
0
0.00
105715509--105715537
3
9.7
3
100
0
58
68
0
31
0
0.89
105716330--105716416
20
4.4
20
68
13
56
32
4
3
59
1.34
105716368--105716414
10
5.1
9
78
14
51
34
0
2
63
1.06
105717049--105717236
9
19.6
9
67
15
58
38
3
2
55
1.30
105717119--105717237
27
4.3
26
69
18
73
38
1
2
57
1.22
105723944--105723969
13
2.0
13
100
0
52
0
15
0
84
0.62
105727339--105727438
40
2.5
41
82
8
116
34
29
16
21
1.94
105744058--105744083
2
13.0
2
100
0
52
50
0
0
50
1.00
105752323--105752388
14
4.6
15
74
22
61
25
6
1
66
1.23
105752335--105752390
27
2.1
27
87
6
80
25
5
1
67
1.21
105754626--105754683
26
2.2
27
79
17
68
50
8
1
39
1.43
105754726--105754760
13
2.5
14
86
13
54
60
0
0
40
0.97
105768181--105768256
3
25.0
3
80
12
84
32
2
1
63
1.17
105771632--105771660
11
2.7
11
94
5
51
75
0
0
24
0.80
105772154--105772202
26
1.9
26
91
4
82
40
6
0
53
1.26
105772173--105772241
25
2.8
24
73
6
57
53
1
1
43
1.18
105774253--105774296
20
2.3
19
80
7
52
50
2
11
36
1.51
105774438--105774468
10
2.9
11
90
9
55
41
0
19
38
1.51
105775178--105775244
27
2.6
24
72
21
64
17
14
28
38
1.90
105777714--105777795
25
3.3
25
82
0
101
32
24
14
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105782927--105783100
46
3.8
46
74
9
174
29
27
20
22
1.98
105782933--105783106
93
1.9
93
91
2
287
28
27
21
22
1.99
105787415--105787472
25
2.3
25
90
3
89
46
13
0
39
1.44
105792426--105792571
48
3.0
48
83
0
184
28
19
26
26
1.98
105792433--105792594
48
3.4
47
78
10
159
27
18
27
25
1.98
105792423--105792642
48
4.7
45
78
5
158
27
19
25
27
1.99
105792423--105792653
96
2.5
93
84
9
267
27
19
25
27
1.99
105798203--105798233
2
15.5
2
100
0
62
51
0
0
48
1.00
105801636--105801660
13
1.9
13
100
0
50
64
16
4
16
1.44
105803843--105803872
14
2.1
14
93
0
51
20
40
13
26
1.89
105803857--105804095
44
5.4
44
74
10
182
25
23
20
31
1.98
105804080--105804109
14
2.1
14
93
0
51
20
40
13
26
1.89
105803947--105804218
147
1.9
147
92
1
456
25
23
20
30
1.98
105804094--105804265
45
3.8
44
81
6
159
26
20
19
34
1.96
105812755--105812795
19
2.2
19
86
8
57
41
7
19
31
1.79
105816448--105816472
13
1.9
13
100
0
50
64
16
4
16
1.44
105816920--105816946
2
13.5
2
100
0
54
51
0
0
48
1.00
105822034--105822088
19
2.8
19
97
2
101
10
9
32
47
1.70
105825239--105825284
14
3.1
14
88
11
74
36
6
21
34
1.80
105827237--105827277
21
2.0
21
85
0
55
26
26
34
12
1.92
105828163--105828409
46
5.3
48
75
12
194
23
29
18
28
1.98
105828138--105828403
47
5.7
46
73
13
170
22
29
19
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105828234--105828406
94
1.9
92
85
7
242
21
29
20
28
1.98
105833382--105833412
7
4.4
7
100
0
62
12
0
38
48
1.42
105833573--105833640
22
2.8
24
82
12
70
66
4
0
29
1.11
105833601--105833651
21
2.4
21
87
6
68
70
7
0
21
1.12
105833698--105833730
15
2.1
16
88
11
50
69
0
0
30
0.88
105834637--105834661
6
4.2
6
100
0
50
32
0
0
68
0.90
105835267--105835326
14
4.2
14
85
4
84
35
8
18
38
1.81
105835267--105835326
29
2.1
28
90
3
93
35
8
18
38
1.81
105835796--105835881
22
4.0
22
69
13
79
44
20
5
29
1.75
105836826--105836886
32
1.9
32
93
0
104
49
18
4
27
1.68
105836826--105836899
32
2.5
30
85
10
91
50
18
4
27
1.65
105839176--105839276
31
2.9
35
81
17
129
22
22
14
39
1.91
105839199--105839293
31
3.1
31
96
0
172
22
23
15
38
1.92
105839485--105839603
24
5.0
24
88
5
161
26
22
22
27
1.99
105839510--105839602
47
2.0
47
93
0
159
27
22
23
25
2.00
105839654--105839713
20
3.0
20
92
0
102
31
21
11
35
1.90
105846000--105846116
31
3.5
34
90
8
147
22
23
17
36
1.94
105846023--105846116
31
3.1
31
96
1
172
23
22
15
38
1.93
105846307--105846425
24
5.0
24
89
5
170
26
22
21
28
1.99
105846307--105846425
47
2.5
48
89
5
170
26
22
21
28
1.99
105846476--105846535
20
3.0
20
95
0
111
33
20
11
35
1.88
105846476--105846530
11
5.4
11
70
16
55
30
20
12
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105846578--105846625
25
1.9
25
86
0
69
25
16
25
33
1.96
105853464--105853581
31
3.5
35
89
9
135
22
23
16
37
1.94
105853487--105853581
31
3.1
31
98
0
181
23
22
15
38
1.92
105853773--105853915
24
6.0
24
91
4
209
26
22
22
28
1.99
105853773--105853914
47
3.0
48
90
5
207
26
22
22
28
1.99
105853772--105853915
71
2.0
72
89
4
220
26
22
22
29
1.99
105853966--105854025
20
3.0
20
92
0
102
31
21
11
35
1.90
105854068--105854115
25
1.9
25
86
0
69
25
16
25
33
1.96
105856202--105856255
2
27.5
2
96
3
101
50
0
0
50
1.00
105873218--105873263
24
1.9
24
90
0
74
45
8
21
23
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425