genome.fa.s8.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr08 129432109 
Parameters: 2 7 7 80 10 50 1000
Length:  129432109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   

This is table  183  of  425  ( 50925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55489236--55489449	78	2.7	78	84	4	225	23	21	31	22	1.98
55491734--55491884	40	3.8	40	77	13	134	27	23	26	22	2.00
55499743--55499893	40	3.8	40	77	13	134	27	23	26	22	2.00
55499780--55499909	40	3.2	40	77	4	138	24	23	27	23	2.00
55503357--55503391	17	2.0	18	88	5	54	11	20	0	68	1.20
55503424--55503500	5	15.6	5	97	2	147	59	0	0	40	0.97
55503521--55503568	19	2.5	19	86	6	62	33	8	4	54	1.50
55503521--55503572	18	2.7	19	88	5	70	32	9	3	53	1.51
55508014--55508112	39	2.5	39	86	3	128	38	12	15	34	1.84
55509155--55509191	18	2.1	18	100	0	74	24	0	27	48	1.51
55509155--55509206	18	2.9	18	88	5	61	23	1	25	50	1.60
55509578--55509632	27	2.0	27	100	0	110	54	3	14	27	1.57
55516689--55516725	18	2.1	18	100	0	74	24	0	27	48	1.51
55516689--55516740	18	2.9	18	88	5	61	23	1	25	50	1.60
55520449--55520838	47	8.3	47	88	1	586	28	30	9	32	1.88
55520449--55520837	187	2.1	188	97	0	726	28	30	9	32	1.88
55520449--55520837	94	4.1	94	94	0	690	28	30	9	32	1.88
55523843--55523875	13	2.6	13	90	4	50	9	15	0	75	1.03
55528533--55528560	13	2.2	13	100	0	56	28	7	21	42	1.79
55529036--55529074	17	2.2	17	86	4	51	53	2	12	30	1.52
55534068--55534115	19	2.5	19	86	0	69	25	10	25	39	1.87
55541427--55541464	20	1.9	20	88	0	58	28	7	13	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55548707--55548815	34	3.2	34	94	1	184	28	20	22	28	1.99
55557758--55557807	20	2.5	20	83	0	64	54	0	22	24	1.45
55559315--55559345	2	15.5	2	100	0	62	48	0	0	51	1.00
55569676--55569838	43	3.8	43	78	15	167	34	26	15	23	1.94
55569681--55569838	44	3.7	42	76	16	155	33	27	15	23	1.95
55580059--55580231	45	3.8	45	78	8	163	20	19	16	43	1.88
55580161--55580225	22	2.9	23	68	13	62	18	24	15	41	1.89
55582532--55582735	40	5.1	40	85	2	225	25	27	21	25	1.99
55587012--55587193	40	4.6	40	79	7	176	24	24	26	23	2.00
55587012--55587195	79	2.3	81	82	8	218	24	24	27	23	2.00
55588566--55588736	46	3.7	45	78	12	195	21	21	28	29	1.98
55588563--55588731	91	1.8	92	92	2	286	21	21	28	28	1.98
55596024--55596195	45	3.7	46	79	11	208	22	20	27	29	1.98
55596420--55596457	19	2.0	20	85	15	53	36	0	23	39	1.55
55597227--55597280	28	1.9	28	96	0	99	33	20	7	38	1.80
55597227--55597269	13	3.0	15	73	13	54	32	16	9	41	1.80
55599786--55599836	27	1.9	26	84	4	66	35	17	27	19	1.94
55600489--55600607	27	4.4	27	84	0	148	25	21	17	35	1.95
55600490--55600607	54	2.2	53	84	4	164	25	22	16	35	1.95
55605456--55605502	23	2.0	23	87	0	67	19	4	31	44	1.70
55607636--55607697	28	2.2	28	85	5	81	22	16	35	25	1.94
55608015--55608300	27	10.6	27	76	10	151	41	20	9	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55608015--55608300	54	5.3	54	80	2	236	41	20	9	29	1.83
55608119--55608296	81	2.2	81	85	3	232	44	19	7	28	1.77
55611994--55612153	49	3.3	49	92	1	252	30	30	8	31	1.86
55619669--55619813	40	3.6	40	86	4	202	25	25	26	22	2.00
55627683--55627827	40	3.6	40	86	4	202	25	25	26	22	2.00
55633794--55633934	64	2.2	64	88	0	201	34	9	17	38	1.83
55634135--55634176	22	1.9	22	85	0	57	23	16	26	33	1.96
55634142--55634184	22	2.0	22	90	9	70	20	13	27	37	1.91
55635712--55635792	40	2.0	40	100	0	162	37	14	14	33	1.88
55637411--55637521	29	3.9	29	81	6	120	27	15	28	27	1.96
55640446--55640471	7	3.7	7	100	0	52	0	11	46	42	1.40
55641622--55641681	8	7.6	8	84	1	68	46	21	20	11	1.82
55641622--55641676	16	3.5	16	87	2	76	43	23	20	12	1.86
55641627--55641676	24	2.1	24	92	0	82	42	24	20	14	1.88
55641912--55642013	29	3.6	29	78	1	107	28	15	28	27	1.96
55641900--55642013	29	4.0	28	75	9	97	30	14	27	27	1.95
55647993--55648020	12	2.3	12	100	0	56	7	21	42	28	1.79
55648380--55648424	22	2.0	22	83	8	56	37	8	0	53	1.32
55649180--55649209	15	2.0	15	100	0	60	20	13	26	40	1.89
55651106--55651225	48	2.5	48	84	2	152	20	15	27	36	1.92
55658180--55658259	34	2.4	34	82	0	97	26	18	18	36	1.94
55659031--55659073	22	2.0	22	90	0	68	41	18	23	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55659251--55659312	27	2.3	27	94	0	106	38	19	19	22	1.93
55659315--55659369	22	2.5	22	77	11	67	32	23	23	20	1.98
55659512--55659633	41	3.0	41	88	0	181	28	28	21	21	1.98
55659893--55660178	27	10.6	27	81	3	200	30	11	19	38	1.88
55659871--55660177	53	5.7	52	72	12	140	30	11	20	38	1.87
55660172--55660249	26	2.9	27	86	3	104	32	21	14	32	1.93
55666895--55666946	22	2.4	21	74	3	50	13	28	36	21	1.91
55673499--55673565	22	3.1	22	79	10	75	17	32	29	19	1.95
55673530--55673575	22	2.1	22	87	0	65	17	28	32	21	1.96
55675593--55675709	62	1.9	60	87	5	173	50	3	3	42	1.36
55675688--55675736	20	2.7	18	77	22	57	51	4	2	42	1.32
55678422--55678456	18	1.9	18	94	0	61	54	2	0	42	1.15
55678849--55678947	12	8.6	12	68	19	52	40	2	4	53	1.31
55678851--55678908	17	3.6	16	75	15	50	39	1	1	56	1.19
55678853--55678990	72	2.0	72	88	5	212	40	3	5	50	1.44
55687431--55687463	11	2.9	12	86	13	52	33	0	0	66	0.92
55688399--55688483	25	3.1	25	75	19	89	54	0	1	44	1.07
55688408--55688461	17	3.3	16	72	27	51	57	0	0	42	0.98
55688401--55688494	30	3.2	30	70	21	81	52	0	2	45	1.12
55688486--55688620	60	2.2	61	85	6	193	42	0	1	54	1.14
55688499--55688598	8	13.0	8	66	12	57	39	0	2	59	1.09
55688777--55688817	16	2.6	16	81	14	57	29	21	2	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55689034--55689091	21	2.6	22	75	24	59	34	1	1	62	1.16
55691085--55691208	40	3.1	39	84	4	158	23	20	28	27	1.99
55696480--55696664	79	2.3	81	83	7	227	23	27	24	24	2.00
55696473--55696664	40	4.8	39	76	8	163	23	28	23	24	2.00
55700963--55700990	12	2.3	12	100	0	56	25	7	21	46	1.76
55700987--55701116	40	3.2	40	83	2	163	25	21	27	25	1.99
55703413--55703534	45	2.7	45	85	6	149	45	16	18	19	1.86
55708660--55708841	39	4.6	39	89	0	247	23	31	21	23	1.98
55708690--55708842	39	3.9	39	92	0	252	23	32	20	23	1.98
55716732--55716912	39	4.6	39	88	1	238	22	31	22	23	1.98
55716762--55716913	39	3.9	38	92	3	241	23	32	21	23	1.98
55716762--55716912	77	1.9	79	93	2	261	23	31	21	23	1.98
55720103--55720151	23	2.1	23	100	0	98	14	16	20	48	1.80
55723911--55723948	19	2.0	20	85	15	53	39	23	0	36	1.55
55726483--55726585	29	3.6	29	81	2	118	21	16	33	29	1.95
55733960--55734062	29	3.6	29	81	2	118	21	16	33	29	1.95
55736694--55736748	13	4.5	13	82	13	80	49	12	0	38	1.41
55736691--55736735	23	2.0	23	100	0	90	46	13	0	40	1.43
55737328--55737362	13	2.8	13	86	4	54	14	2	0	82	0.77
55751525--55751572	25	1.9	25	86	0	69	33	25	16	25	1.96
55751616--55751674	20	3.0	20	92	0	100	37	11	20	30	1.89
55751725--55751819	24	4.0	24	85	10	124	28	21	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55751726--55751819	47	2.0	49	85	12	133	27	21	24	26	1.99
55752011--55752280	38	7.4	38	84	11	379	38	17	21	22	1.93
55752011--55752280	69	3.8	71	85	11	324	38	17	21	22	1.93
55752011--55752280	107	2.5	107	96	0	486	38	17	21	22	1.93
55753397--55753440	19	2.4	19	85	7	56	50	0	9	40	1.34
55753532--55753560	15	1.9	15	100	0	58	41	0	0	58	0.98
55757541--55757703	39	4.2	39	92	0	254	24	32	20	22	1.98
55764605--55764797	39	4.9	39	90	0	251	23	31	21	23	1.98
55764635--55764797	39	4.2	39	93	0	263	24	31	20	23	1.98
55765746--55765880	60	2.2	59	82	8	148	28	20	25	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425