genome.fa.s3.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  107  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30886373--30886535	40	4.1	40	78	5	145	22	28	24	25	1.99
30894425--30894554	40	3.2	40	82	4	165	23	28	24	23	2.00
30894425--30894588	40	4.1	40	78	4	145	21	28	25	25	1.99
30896881--30896987	42	2.5	42	95	0	187	28	14	33	23	1.93
30896995--30897064	27	2.5	28	86	2	97	27	14	25	32	1.94
30901784--30902052	48	5.6	49	69	8	167	23	28	18	29	1.97
30901784--30902048	96	2.8	96	88	1	361	23	28	18	29	1.98
30908333--30908358	13	2.0	13	100	0	52	30	7	23	38	1.83
30909139--30909163	10	2.5	10	100	0	50	44	0	0	56	0.99
30909455--30909622	43	3.9	43	78	3	185	24	16	27	30	1.97
30910591--30910843	126	2.0	125	98	1	490	34	9	16	38	1.82
30919549--30919694	42	3.5	41	77	8	150	24	17	28	30	1.97
30920662--30920711	26	2.0	24	88	7	73	64	6	0	30	1.18
30920682--30920740	21	2.8	21	78	12	59	69	8	0	22	1.15
30920787--30920819	15	2.1	16	88	11	50	69	0	0	30	0.88
30921191--30921228	2	19.0	2	100	0	76	50	0	0	50	1.00
30923372--30923695	48	6.8	48	81	4	332	23	29	18	28	1.98
30926212--30926236	2	12.5	2	100	0	50	48	0	0	52	1.00
30932784--30932955	93	1.8	93	96	0	317	27	30	22	20	1.98
30932776--30932951	46	3.8	46	81	10	232	28	29	21	20	1.98
30937548--30937745	71	2.8	70	92	3	294	33	17	28	20	1.95
30937614--30937731	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30937582--30937745	71	2.3	71	100	0	328	35	17	28	18	1.94
30944645--30944842	71	2.8	70	92	3	294	33	17	28	20	1.95
30944711--30944828	41	3.1	41	60	28	98	32	17	28	21	1.96
30944679--30944842	71	2.3	71	100	0	328	35	17	28	18	1.94
30947166--30947198	2	16.5	2	100	0	66	48	0	0	51	1.00
30947684--30947748	30	2.2	30	91	0	112	24	24	7	43	1.80
30955100--30955169	27	2.6	27	93	2	113	30	28	14	27	1.95
30963003--30963072	27	2.6	27	93	2	113	30	28	14	27	1.95
30970070--30970128	30	2.0	30	86	3	84	50	10	6	32	1.62
30971893--30972003	23	4.8	23	73	13	70	28	22	17	31	1.96
30971949--30972005	24	2.5	22	78	10	69	24	22	15	36	1.94
30971958--30972006	24	2.0	24	88	0	71	24	22	14	38	1.91
30972255--30972287	11	3.1	11	86	8	50	27	0	30	42	1.56
30979035--30979117	22	3.7	23	82	10	100	28	18	16	36	1.93
30979365--30979397	11	3.1	11	86	8	50	27	0	30	42	1.56
30979488--30979573	40	2.1	40	91	2	136	15	19	15	50	1.79
30981648--30981728	41	2.0	41	95	0	144	38	19	9	32	1.85
30985690--30985761	29	2.5	29	100	0	144	26	31	15	26	1.95
30993652--30993753	29	3.5	29	90	0	150	23	33	15	27	1.95
30997358--30997427	27	2.5	28	86	2	97	32	25	14	27	1.94
30997435--30997541	42	2.5	42	96	0	196	22	33	14	28	1.94
30999980--31000006	14	1.9	14	100	0	54	74	0	7	18	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31001523--31001573	10	4.9	10	86	9	66	60	7	0	31	1.25
31001535--31001568	12	3.0	12	91	8	54	58	8	0	32	1.29
31001523--31001578	22	2.6	22	86	5	71	58	8	0	32	1.29
31005995--31006210	27	8.0	27	81	5	231	25	13	19	40	1.89
31005970--31006207	54	4.4	54	78	4	167	27	14	18	39	1.90
31006540--31006601	18	3.4	18	75	4	63	19	19	14	46	1.83
31007858--31007912	3	18.0	3	77	3	56	63	1	1	32	1.15
31007858--31007909	22	2.4	21	90	3	77	63	1	1	32	1.16
31014674--31014763	22	3.9	24	84	7	100	35	17	21	25	1.95
31014684--31014763	22	3.6	22	86	5	108	35	18	21	25	1.96
31014723--31014771	22	2.2	22	88	0	71	32	22	24	20	1.98
31021281--31021391	41	2.8	40	74	12	109	21	18	27	31	1.97
31025028--31025137	29	3.8	28	81	8	132	30	16	27	26	1.97
31027495--31027560	24	2.7	25	86	9	75	33	18	18	30	1.94
31027506--31027563	24	2.4	25	88	5	91	36	15	20	27	1.93
31027516--31027596	22	3.6	22	77	11	83	37	19	18	24	1.94
31027556--31027604	22	2.2	22	85	0	62	34	22	22	20	1.97
31030839--31030953	46	2.5	46	85	1	149	29	17	27	25	1.97
31038319--31038586	47	5.7	45	79	9	229	26	19	30	23	1.98
31040690--31040780	33	2.8	33	96	0	164	25	25	17	31	1.97
31041628--31041654	5	5.4	5	100	0	54	18	0	0	81	0.69
31043484--31043691	40	5.2	39	81	3	193	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31043484--31043690	80	2.6	80	81	3	229	25	26	23	25	2.00
31047847--31047904	29	2.0	29	100	0	116	41	13	13	31	1.84
31048736--31048769	2	17.0	2	100	0	68	50	0	0	50	1.00
31052659--31052710	16	3.2	16	78	5	59	61	7	3	26	1.41
31054986--31055017	2	16.0	2	100	0	64	50	0	0	50	1.00
31055779--31056017	43	5.6	44	88	4	321	30	27	17	24	1.97
31058590--31058684	34	2.8	34	79	9	113	27	25	24	23	2.00
31061791--31061857	34	2.0	34	87	0	98	35	5	31	26	1.81
31064438--31064532	34	2.8	34	80	6	120	27	24	23	25	2.00
31064598--31064632	18	1.9	18	100	0	70	42	34	11	11	1.77
31067844--31067871	2	14.0	2	100	0	56	50	0	0	50	1.00
31075067--31075115	24	1.9	26	88	12	75	36	4	10	48	1.56
31077710--31077862	40	3.8	40	79	5	148	25	28	23	22	2.00
31084986--31085148	26	6.3	26	87	3	224	26	22	22	28	1.99
31084986--31085148	52	3.2	52	92	3	260	26	22	22	28	1.99
31085198--31085272	20	3.8	20	91	6	111	34	18	9	37	1.83
31085198--31085253	11	5.5	11	71	16	57	32	19	10	37	1.86
31085215--31085271	9	5.8	10	76	15	57	35	19	8	36	1.83
31094176--31094383	79	2.6	80	78	6	190	24	30	23	22	1.99
31094276--31094383	40	2.7	40	86	0	135	21	30	25	23	1.99
31096755--31096884	40	3.3	39	83	4	163	23	28	25	23	1.99
31099661--31099822	51	3.2	52	92	5	260	26	23	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31099661--31099822	26	6.3	26	84	5	206	26	23	22	27	1.99
31099678--31099822	77	1.9	76	88	1	218	26	23	24	26	2.00
31099876--31099946	20	3.7	20	90	7	103	33	18	9	38	1.84
31099889--31099927	11	3.7	11	80	13	55	33	20	10	35	1.86
31099889--31099945	9	5.8	10	76	15	57	35	19	8	36	1.83
31103433--31103494	17	3.4	17	71	16	52	38	27	1	32	1.66
31103424--31103498	38	2.0	38	97	0	141	37	26	2	33	1.71
31103426--31103487	19	3.3	19	70	17	65	37	25	3	33	1.72
31105234--31105271	14	2.9	13	81	11	51	57	10	13	18	1.63
31105642--31106160	261	2.0	261	93	1	880	27	20	20	30	1.98
31114708--31114819	40	2.8	40	80	12	131	32	24	17	25	1.97
31115540--31115577	14	2.9	13	81	11	51	18	13	10	57	1.63
31120875--31121132	40	6.5	40	90	1	376	27	27	20	24	1.99
31128239--31128376	40	3.5	40	91	3	208	24	28	22	24	2.00
31128265--31128380	40	2.9	40	96	0	214	24	28	22	25	1.99
31136047--31136198	43	3.5	43	94	0	268	31	32	24	11	1.90
31136191--31136298	38	2.8	38	85	0	126	29	26	22	21	1.99
31138955--31138993	13	3.0	12	88	7	51	25	30	28	15	1.96
31139350--31139387	14	2.9	13	81	11	51	18	13	10	57	1.63
31147314--31147372	28	2.1	28	96	0	109	27	28	15	28	1.96
31147353--31147491	40	3.5	40	82	0	161	34	24	15	25	1.95
31155059--31155235	46	3.8	46	75	9	146	24	29	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31160581--31160689	42	2.6	42	76	2	112	28	17	25	28	1.97
31163239--31163407	48	3.6	47	77	9	164	27	20	28	23	1.99
31164581--31164633	26	2.0	26	96	0	97	20	24	16	37	1.93
31177548--31177619	37	1.9	38	97	2	137	38	11	8	41	1.71
31177561--31177636	37	2.1	37	80	7	84	39	13	6	40	1.70
31181915--31182012	27	3.6	27	82	5	126	42	20	8	28	1.80
31181966--31182028	27	2.3	27	88	0	90	41	17	9	31	1.82
31181915--31182065	54	2.8	55	82	6	150	42	20	8	28	1.81
31182053--31182297	27	9.1	27	86	4	264	35	17	20	26	1.95
31182024--31182269	80	3.1	80	79	8	259	36	18	18	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438