genome.fa.s3.2.7.7.80.10.50.1000.342.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  342  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106934827--106934862	7	5.0	7	86	6	54	69	0	0	30	0.89
106934827--106934864	15	2.6	15	91	4	60	68	0	0	31	0.90
106934832--106934988	21	7.7	19	67	21	63	62	1	4	31	1.26
106934881--106934986	7	15.9	7	70	16	64	62	2	1	33	1.21
106934966--106935078	15	7.4	15	65	21	56	57	1	1	38	1.19
106935022--106935071	11	4.9	11	74	18	54	60	0	2	38	1.09
106935022--106935071	20	2.5	21	75	18	52	60	0	2	38	1.09
106948626--106948711	33	2.5	34	79	5	102	13	6	37	41	1.72
106950945--106951101	43	3.6	44	78	10	164	25	19	24	30	1.98
106954035--106954074	14	2.9	14	100	0	80	37	35	5	22	1.76
106959579--106959658	32	2.3	35	81	12	94	52	22	1	23	1.54
106960381--106960646	24	11.1	24	77	9	247	36	26	11	25	1.90
106960314--106960448	72	1.9	72	82	0	171	35	28	11	25	1.90
106960343--106960645	96	3.2	96	96	0	543	35	26	11	26	1.90
106960313--106960646	48	7.0	48	77	0	328	35	26	11	25	1.91
106961071--106961100	14	2.1	14	93	0	51	56	16	0	26	1.40
106976750--106976805	26	2.2	25	83	3	67	42	16	10	30	1.82
106979014--106979117	26	4.0	26	92	0	172	35	23	7	33	1.83
106979014--106979117	52	2.0	52	98	0	199	35	23	7	33	1.83
106981123--106981219	32	3.0	32	93	0	176	32	6	22	38	1.79
106982700--106982752	26	2.0	26	85	7	72	37	22	15	24	1.92
106984363--106984397	12	2.9	12	100	0	70	8	25	51	14	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106989233--106989329	32	3.0	32	96	0	185	31	6	23	38	1.80
106990808--106990860	26	2.0	26	85	7	72	37	22	15	24	1.92
106993274--106993327	18	3.0	18	100	0	108	33	16	0	50	1.46
106996397--106996446	18	2.8	18	87	0	73	46	12	8	34	1.70
106996458--106996492	18	1.9	18	94	0	61	34	17	20	28	1.95
106997851--106997890	20	2.2	20	82	13	50	42	0	0	57	0.98
106998174--106998265	3	30.3	3	95	2	166	67	1	0	31	0.98
106998403--106998437	13	2.7	13	91	8	54	60	0	0	40	0.97
107001976--107002023	25	1.9	25	86	0	69	33	25	16	25	1.96
107002066--107002146	20	4.1	20	95	0	144	34	11	20	33	1.88
107002091--107002146	11	5.5	11	75	16	66	35	10	19	33	1.87
107002082--107002138	9	5.9	9	75	15	51	35	8	21	35	1.84
107002196--107002338	24	6.0	24	91	4	209	28	22	22	26	1.99
107002196--107002338	47	3.0	47	90	5	207	28	22	22	26	1.99
107002196--107002339	71	2.0	72	89	4	220	29	22	22	26	1.99
107002530--107002593	31	2.1	31	90	0	101	35	15	25	23	1.94
107003547--107003713	45	3.6	44	78	13	176	27	20	29	22	1.99
107009499--107009611	40	2.8	40	77	12	115	27	15	29	27	1.96
107015077--107015243	40	4.2	40	82	2	185	25	27	21	25	1.99
107015077--107015243	80	2.1	79	83	7	205	25	27	21	25	1.99
107016062--107016107	17	2.5	19	74	22	53	34	23	17	23	1.96
107023074--107023240	40	4.2	40	82	2	185	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107023074--107023240	80	2.1	79	83	7	205	25	27	21	25	1.99
107024062--107024107	17	2.5	19	74	22	53	34	23	17	23	1.96
107027052--107027189	43	3.2	41	79	11	127	24	17	26	31	1.97
107028809--107029321	101	5.1	101	80	6	535	32	15	22	29	1.94
107029034--107029321	90	3.1	90	83	5	315	32	17	23	26	1.96
107032959--107033041	43	1.9	43	85	0	112	31	28	15	24	1.96
107035700--107035742	6	6.9	7	87	12	51	16	23	0	60	1.35
107035701--107035742	18	2.3	19	83	4	59	16	23	0	59	1.37
107040663--107040727	15	4.4	15	78	16	73	63	13	13	9	1.53
107040663--107040731	30	2.3	31	83	14	92	60	17	13	8	1.56
107042142--107042172	2	15.5	2	100	0	62	48	0	0	51	1.00
107043756--107043939	101	1.8	99	82	2	233	30	26	18	25	1.98
107045034--107045059	13	2.0	13	100	0	52	15	7	15	61	1.55
107049796--107049843	5	10.4	5	78	13	50	77	2	2	18	0.97
107049810--107049843	9	3.8	9	85	14	52	79	0	0	20	0.73
107049796--107049843	14	3.5	14	86	11	64	77	2	2	18	0.97
107051399--107051428	13	2.2	14	94	5	53	60	3	0	36	1.14
107054960--107055034	30	2.6	29	80	4	87	38	1	2	57	1.21
107064053--107064220	40	4.2	40	82	4	180	25	26	22	25	2.00
107072073--107072239	40	4.2	40	82	2	185	24	26	22	26	2.00
107080067--107080234	40	4.2	40	78	8	162	25	26	22	25	2.00
107086221--107086313	48	1.9	48	93	0	159	31	6	11	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107086595--107086684	33	2.7	33	75	0	99	21	12	45	21	1.83
107087493--107087526	14	2.4	14	100	0	68	44	5	14	35	1.70
107089293--107089468	46	3.8	46	78	11	189	19	21	31	28	1.97
107089289--107089461	93	1.9	93	91	2	285	19	21	31	27	1.97
107090205--107090283	27	3.1	27	65	20	80	36	7	18	36	1.80
107090189--107090285	48	2.0	48	100	0	194	40	6	16	37	1.74
107090196--107090272	24	3.2	24	66	20	70	36	6	15	41	1.73
107092260--107092317	31	1.9	30	89	3	89	1	20	1	75	0.97
107093146--107093189	18	2.5	19	79	20	51	18	2	2	77	0.98
107093120--107093195	23	3.1	25	81	9	77	17	2	2	77	1.00
107093120--107093172	26	2.1	26	86	6	74	15	3	1	79	0.96
107093161--107093209	23	2.1	23	88	7	73	24	0	4	71	1.03
107093228--107093287	23	2.5	26	79	17	76	36	0	0	63	0.95
107093228--107093318	33	2.6	34	86	13	125	39	0	1	59	1.05
107093272--107093316	20	2.1	23	80	16	60	40	0	2	57	1.11
107093274--107093316	22	2.0	20	86	8	59	39	0	2	58	1.11
107093398--107093427	13	2.4	13	94	5	53	56	0	0	43	0.99
107093412--107093467	10	5.5	10	78	4	58	58	3	0	37	1.15
107093567--107093701	36	3.7	39	78	16	121	57	1	1	40	1.17
107093597--107093714	36	3.4	34	87	6	159	58	1	1	38	1.18
107093682--107093726	21	2.1	23	88	12	69	62	0	0	37	0.96
107093761--107093799	5	7.8	5	88	11	62	79	0	2	17	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107093764--107093863	19	5.2	18	74	16	60	78	2	6	14	1.03
107097620--107097662	20	2.2	20	100	0	86	25	13	23	37	1.92
107098912--107098946	15	2.4	15	95	4	63	54	22	5	17	1.64
107099213--107099276	32	2.0	32	100	0	128	31	15	18	34	1.93
107115013--107115072	29	2.1	29	100	0	120	35	26	13	25	1.93
107116020--107116079	29	2.1	29	100	0	120	23	21	23	31	1.98
107127522--107127732	46	4.6	46	77	9	184	25	29	18	27	1.98
107127469--107127737	94	2.9	94	77	11	284	24	29	18	27	1.98
107135772--107135890	39	3.0	39	92	2	184	43	21	5	30	1.73
107135820--107135886	22	3.3	22	66	33	67	47	20	2	28	1.65
107138063--107138093	16	1.9	16	93	0	53	0	19	0	80	0.71
107141170--107141222	24	2.2	25	86	3	72	60	0	26	13	1.33
107143442--107143521	32	2.4	33	81	10	92	30	2	20	47	1.63
107143452--107143566	32	3.6	33	76	13	98	33	3	17	45	1.65
107143646--107143670	5	5.0	5	100	0	50	40	0	0	60	0.97
107143663--107143710	20	2.5	19	86	6	62	25	6	16	52	1.67
107144073--107144150	36	2.2	35	81	2	84	29	7	19	43	1.78
107145993--107146200	97	2.1	99	91	3	339	32	13	14	38	1.86
107146468--107146687	90	2.4	90	79	5	257	20	21	17	39	1.92
107146811--107146899	30	3.0	30	86	0	124	16	20	23	39	1.92
107147124--107147732	75	8.0	78	73	10	418	26	14	17	41	1.88
107147182--107147475	152	1.9	156	82	6	375	24	15	17	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107147202--107147732	231	2.3	231	83	5	653	26	14	17	41	1.88
107147124--107147882	75	10.0	76	70	11	416	26	14	17	41	1.87
107147452--107147757	156	2.0	157	83	3	393	25	13	18	42	1.87
107147246--107147802	231	2.4	228	79	4	573	26	14	18	41	1.88
107148223--107148270	2	24.0	2	100	0	96	50	0	0	50	1.00
107149098--107149150	23	2.2	24	83	12	65	39	3	16	39	1.67
107149177--107149214	2	19.5	2	89	5	60	52	2	0	44	1.14
107149353--107149395	22	2.0	22	86	9	61	48	6	6	37	1.57
107149511--107150251	3	242.7	3	67	20	268	59	3	5	31	1.38
107149700--107150300	188	3.1	191	92	6	894	59	3	4	31	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438