genome.fa.s3.2.7.7.80.10.50.1000.309.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  309  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96447285--96447470	55	3.5	53	83	10	227	34	18	24	22	1.96
96449972--96450162	51	3.8	50	77	2	159	24	20	26	28	1.99
96449972--96450159	101	1.9	101	89	1	297	23	21	26	28	1.99
96449972--96450162	100	1.9	101	89	1	294	24	20	26	28	1.99
96450362--96450391	16	1.9	15	93	6	51	43	0	23	33	1.54
96451020--96451075	27	2.1	27	100	0	112	28	17	14	39	1.89
96453887--96453946	15	4.0	15	84	0	75	13	18	13	55	1.70
96456040--96456207	46	3.7	44	78	8	140	27	17	28	26	1.97
96457237--96457261	13	1.9	13	100	0	50	40	28	32	0	1.57
96457313--96457352	21	2.0	21	90	5	64	12	35	27	25	1.92
96463535--96463763	46	5.0	44	73	15	180	26	18	28	26	1.98
96466973--96467222	50	5.0	50	78	3	252	24	18	26	30	1.98
96466978--96467159	101	1.8	101	90	0	292	25	19	25	29	1.98
96466944--96467208	50	5.3	50	78	4	228	24	17	26	31	1.97
96466944--96467219	151	1.8	152	86	2	403	24	18	26	30	1.97
96466941--96467254	150	2.1	152	83	1	398	24	17	27	31	1.97
96467420--96467449	16	1.9	15	93	6	51	43	0	23	33	1.54
96470658--96470767	48	2.3	48	87	0	166	34	30	14	20	1.92
96474804--96474994	40	4.8	40	86	0	229	26	24	26	23	2.00
96474802--96475036	80	2.9	79	80	3	245	27	24	25	22	2.00
96474804--96475036	40	5.8	40	82	4	200	27	24	25	22	2.00
96474804--96475036	120	1.9	121	79	2	263	27	24	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96481533--96481583	21	2.6	19	85	14	77	50	0	21	27	1.48
96482894--96483084	40	4.8	40	85	0	229	26	24	26	23	2.00
96482894--96483108	40	5.4	39	82	6	216	26	25	25	23	2.00
96485515--96485551	2	18.5	2	100	0	74	51	0	0	48	1.00
96489400--96489455	15	3.6	15	81	9	67	50	19	14	16	1.79
96493451--96493542	45	2.0	45	97	0	175	32	27	16	23	1.96
96493516--96493647	49	2.7	50	80	8	162	25	30	18	25	1.98
96495702--96495760	20	3.0	20	92	0	100	35	11	20	32	1.89
96495811--96495905	24	4.0	24	85	10	124	28	21	24	26	1.99
96495812--96495905	47	2.0	49	85	12	133	27	21	24	26	1.99
96496097--96496328	38	6.4	38	80	13	294	39	16	21	22	1.92
96496121--96496305	31	5.5	31	76	16	181	41	15	20	23	1.89
96496097--96496305	69	3.0	69	95	0	382	40	15	20	23	1.91
96499190--96499387	40	5.2	39	76	13	155	23	28	23	24	1.99
96499206--96499266	31	2.0	31	93	0	104	18	32	27	21	1.96
96500580--96500690	56	2.0	55	82	8	136	27	16	18	37	1.92
96512971--96513018	25	1.9	25	86	0	69	33	25	16	25	1.96
96513062--96513120	20	3.0	20	92	0	100	35	11	20	32	1.89
96513171--96513265	24	4.0	24	85	10	124	28	21	24	26	1.99
96513172--96513265	47	2.0	49	85	12	133	27	21	24	26	1.99
96513457--96513675	38	6.1	38	82	14	304	40	15	21	23	1.91
96513481--96513665	31	5.5	31	77	16	190	41	15	20	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96513457--96513665	69	3.0	69	96	0	391	39	16	20	23	1.92
96521884--96522059	46	3.8	45	78	10	178	23	21	25	30	1.99
96521882--96522053	93	1.8	93	87	4	258	23	20	26	29	1.99
96523859--96523915	26	2.2	26	80	3	60	28	19	19	33	1.96
96524161--96524196	8	4.5	8	89	10	56	2	19	22	55	1.56
96529730--96529820	37	2.4	37	92	1	146	25	30	18	25	1.98
96529860--96530059	48	4.2	48	94	0	346	31	29	7	32	1.84
96530051--96530381	49	6.9	49	91	3	514	29	28	8	34	1.86
96530051--96530383	47	7.0	47	91	4	515	29	28	8	34	1.86
96534157--96534243	37	2.3	36	94	5	147	26	33	19	20	1.97
96534316--96534554	49	5.1	49	84	11	333	31	31	7	29	1.86
96534458--96534531	36	2.1	36	100	0	148	33	36	5	24	1.78
96538166--96538397	40	5.8	40	96	0	410	26	30	20	22	1.98
96540283--96540369	37	2.3	36	94	5	147	26	33	19	20	1.97
96540483--96540542	18	3.3	18	78	17	79	36	31	0	31	1.58
96540479--96540550	36	2.0	36	97	0	135	36	31	0	31	1.58
96540440--96540599	85	1.9	85	96	0	293	32	31	5	30	1.81
96540515--96540629	49	2.3	49	98	0	221	32	31	6	29	1.84
96544241--96544508	40	6.8	40	93	3	445	26	29	20	23	1.98
96546392--96546478	37	2.3	36	94	5	147	26	33	19	20	1.97
96546547--96546751	49	4.2	49	97	0	374	31	30	8	30	1.87
96549522--96549619	41	2.4	41	80	11	112	25	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96550364--96550593	40	5.8	40	94	2	392	26	30	20	23	1.99
96550364--96550593	79	2.9	79	94	2	390	26	30	20	23	1.99
96550364--96550593	119	1.9	119	94	0	406	26	30	20	23	1.99
96552478--96552564	37	2.3	36	94	5	147	26	33	19	20	1.97
96552633--96552836	49	4.2	49	96	1	365	31	29	8	30	1.87
96552635--96552836	97	2.1	98	95	0	361	31	30	8	30	1.87
96557829--96557879	24	2.3	21	77	12	57	41	13	7	37	1.74
96559527--96559743	43	5.0	43	85	2	301	23	19	30	27	1.98
96561004--96561111	26	4.2	26	93	0	189	32	7	24	36	1.83
96562710--96562816	27	3.9	27	82	9	119	18	23	21	36	1.95
96562710--96562817	54	2.0	54	85	3	146	18	23	21	37	1.95
96565268--96565538	86	3.1	86	80	2	283	31	17	15	35	1.92
96569375--96569458	26	3.2	26	93	0	141	35	22	5	35	1.79
96572427--96572456	16	1.9	16	93	6	53	26	3	10	60	1.45
96573622--96573673	25	2.0	26	85	3	70	25	13	23	38	1.91
96575157--96575265	26	4.2	26	96	1	175	36	23	5	33	1.78
96578150--96578246	43	2.3	41	86	12	133	28	25	14	30	1.95
96578076--96578826	176	4.3	176	88	4	1000	26	24	17	31	1.97
96578069--96578826	349	2.2	349	86	3	1074	26	24	17	31	1.97
96583636--96583681	23	2.0	23	83	8	58	50	4	17	28	1.65
96600211--96600254	20	2.1	21	83	4	54	63	0	2	34	1.07
96600213--96600256	23	1.9	23	86	9	63	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96601104--96601173	36	1.9	36	97	0	131	35	15	4	44	1.67
96601104--96601192	36	2.5	35	87	7	108	35	15	5	42	1.71
96601528--96601601	37	1.9	39	81	10	91	50	2	10	36	1.52
96606310--96606404	33	2.9	32	89	3	145	17	42	22	17	1.90
96606308--96606428	32	3.7	32	85	3	125	18	40	22	19	1.91
96606965--96607006	17	2.5	17	76	11	50	66	2	30	0	1.04
96609438--96609563	66	1.9	66	85	3	173	23	24	19	32	1.97
96618375--96618650	137	2.0	137	95	0	498	31	23	18	26	1.98
96620435--96620518	26	3.2	26	93	0	141	36	26	4	32	1.77
96622572--96622649	23	3.4	22	75	10	77	30	5	1	62	1.24
96622743--96622936	26	7.8	24	67	17	85	34	6	1	58	1.32
96622762--96622921	77	2.1	75	80	10	184	34	6	1	56	1.37
96622940--96623129	28	6.7	27	68	22	79	28	6	2	61	1.35
96622978--96623081	28	3.9	25	74	12	82	29	4	1	63	1.26
96628371--96628414	23	1.9	23	90	0	70	15	2	36	45	1.59
96628901--96628951	25	2.0	25	92	7	86	41	5	5	47	1.52
96631399--96631612	3	70.7	3	69	9	130	60	1	7	29	1.36
96631371--96631589	12	17.7	12	68	16	65	59	1	10	28	1.38
96631400--96631595	78	2.5	78	80	9	204	59	1	8	30	1.36
96631764--96632106	3	114.0	3	67	11	130	59	1	8	30	1.36
96633530--96633655	44	2.9	43	80	7	110	27	21	19	30	1.98
96633624--96633910	88	3.3	88	84	1	362	26	21	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96633673--96633882	44	4.8	43	65	14	115	25	20	24	29	1.99
96634110--96634213	45	2.3	44	83	1	118	29	25	15	29	1.96
96634224--96634320	47	2.1	47	92	3	160	21	26	26	24	1.99
96634263--96634518	68	3.8	68	86	0	368	26	22	25	25	2.00
96634531--96634953	86	4.9	86	88	0	560	22	23	22	31	1.98
96641554--96641599	19	2.3	20	92	3	76	71	4	4	19	1.20
96641589--96642281	3	230.0	3	67	12	210	59	2	7	30	1.37
96653142--96653206	30	2.2	30	97	0	121	26	3	12	58	1.49
96655266--96655304	2	19.5	2	100	0	78	51	0	0	48	1.00
96669368--96669409	20	2.1	20	90	0	66	33	11	4	50	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438