genome.fa.s3.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  146  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43644628--43644812	79	2.3	82	82	9	222	24	24	27	23	2.00
43644629--43644820	40	4.8	40	77	8	169	25	24	28	22	2.00
43644628--43644845	79	2.7	79	78	7	176	25	23	27	23	2.00
43648274--43648324	19	2.4	21	71	15	52	29	3	5	60	1.38
43649670--43649800	49	2.7	49	81	2	147	23	30	19	25	1.98
43649858--43649982	46	2.7	46	86	6	173	24	27	18	30	1.98
43652281--43652425	40	3.6	40	94	1	247	26	28	22	22	1.99
43658567--43658636	27	2.6	27	93	2	113	30	28	14	27	1.95
43663401--43663549	40	3.7	39	86	5	210	25	26	22	25	2.00
43668925--43668990	29	2.3	29	84	2	80	34	4	6	54	1.45
43669685--43669733	23	2.1	23	82	14	57	57	0	2	40	1.10
43670666--43670692	2	13.5	2	100	0	54	48	0	0	51	1.00
43670930--43671059	40	3.3	39	80	4	154	32	10	20	36	1.87
43673838--43673863	11	2.4	11	100	0	52	61	15	15	7	1.55
43675342--43675509	40	4.2	40	79	1	158	22	27	23	26	2.00
43675358--43675507	80	1.9	80	84	5	205	21	27	24	26	1.99
43677284--43677323	13	3.1	13	92	0	62	7	42	32	17	1.77
43685282--43685353	37	2.0	34	81	7	81	5	37	1	55	1.32
43692693--43692779	24	3.6	24	96	0	165	21	17	25	35	1.95
43692693--43692801	48	2.3	48	91	3	175	24	17	23	33	1.96
43692693--43692801	24	4.5	24	90	2	157	24	17	23	33	1.96
43694818--43694889	37	2.0	34	81	7	81	5	37	1	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43708083--43708145	27	2.4	26	78	7	65	53	0	3	42	1.16
43708090--43708161	39	1.9	39	83	10	98	50	0	5	44	1.25
43708366--43708416	16	3.2	16	94	0	93	25	33	5	35	1.80
43712396--43712949	277	2.0	277	98	0	1081	31	18	16	33	1.94
43715983--43716119	42	3.2	42	85	1	175	33	12	22	31	1.91
43717267--43717388	43	2.9	42	85	2	172	28	13	25	32	1.93
43719197--43719372	46	3.8	46	76	6	176	21	19	28	30	1.98
43719193--43719364	93	1.8	93	88	2	265	21	20	29	29	1.98
43723169--43723383	24	9.0	24	97	0	367	36	25	17	20	1.95
43723833--43723860	2	14.0	2	100	0	56	50	0	0	50	1.00
43725639--43725853	24	9.0	24	97	0	376	36	25	17	20	1.94
43726302--43726329	2	14.0	2	100	0	56	50	0	0	50	1.00
43727314--43727348	18	2.1	17	89	10	54	28	14	0	57	1.38
43728104--43728317	24	9.0	24	97	0	367	36	24	17	21	1.95
43728766--43728791	2	13.0	2	100	0	52	50	0	0	50	1.00
43735837--43736042	24	8.7	24	97	0	344	35	25	17	21	1.95
43737871--43737920	15	3.4	15	80	2	57	14	18	8	60	1.58
43744289--43744429	24	5.9	24	98	0	273	36	24	17	20	1.94
43745553--43745581	2	14.5	2	100	0	58	51	0	0	48	1.00
43752600--43752814	24	9.0	24	97	0	367	36	25	17	20	1.95
43754661--43754710	15	3.4	15	80	2	57	14	18	8	60	1.58
43757100--43757275	46	3.8	46	74	7	167	21	18	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43757096--43757266	93	1.8	93	88	2	263	21	19	30	28	1.97
43761065--43761162	19	5.2	19	92	7	146	35	14	10	39	1.80
43761065--43761162	36	2.6	37	88	9	144	35	14	10	39	1.80
43761932--43762014	43	1.9	43	82	2	103	25	22	16	34	1.95
43762064--43762599	84	6.4	84	86	5	748	24	21	22	31	1.98
43762072--43762599	251	2.1	249	87	5	769	24	21	22	31	1.98
43763549--43763574	11	2.4	11	100	0	52	0	7	0	92	0.39
43769191--43769237	22	2.2	21	84	3	58	36	21	8	34	1.84
43769208--43769288	19	4.2	19	90	3	126	34	16	11	38	1.84
43777989--43778235	55	4.6	54	80	9	260	35	18	24	21	1.96
43777998--43778196	108	1.8	110	90	4	323	33	17	25	23	1.96
43778435--43778465	16	1.9	16	93	0	53	41	0	22	35	1.54
43781032--43781061	15	1.9	16	93	6	53	50	13	0	36	1.42
43788350--43788414	25	2.6	25	85	0	85	20	29	24	26	1.99
43790960--43790988	14	2.1	14	93	6	51	13	3	20	62	1.46
43793844--43793976	46	2.8	49	78	16	163	29	28	20	21	1.98
43793852--43793992	46	3.0	44	76	14	126	29	28	19	22	1.98
43799814--43799905	42	2.2	42	92	0	148	34	21	14	29	1.93
43800045--43800121	25	3.1	25	86	1	102	25	19	22	32	1.97
43800931--43800995	27	2.4	27	82	5	78	21	24	18	35	1.96
43801049--43801135	27	3.0	29	78	5	97	35	10	14	39	1.81
43801112--43801183	27	2.7	26	82	6	90	26	4	23	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43801241--43801331	27	3.4	27	86	3	130	40	6	24	28	1.80
43803335--43803382	25	1.9	25	86	0	69	33	25	16	25	1.96
43803426--43803484	20	3.0	20	94	0	100	35	11	22	30	1.90
43803535--43803677	24	6.0	24	91	4	209	28	22	22	26	1.99
43803535--43803677	47	3.0	47	90	5	207	28	22	22	26	1.99
43803535--43803678	71	2.0	72	89	4	220	29	22	22	26	1.99
43803869--43803932	31	2.1	31	96	0	119	39	15	21	23	1.92
43813993--43814051	21	2.8	21	76	5	66	3	50	16	28	1.61
43814460--43814488	14	2.1	14	93	6	51	58	6	0	34	1.25
43817527--43817698	93	1.8	93	91	0	281	28	29	20	21	1.98
43817519--43817694	46	3.8	46	77	10	187	29	28	19	21	1.98
43817570--43817713	46	3.1	46	70	14	125	30	29	18	21	1.97
43820969--43821035	9	7.7	9	72	9	50	37	0	16	46	1.47
43821281--43821896	110	5.8	105	92	4	960	57	3	5	33	1.39
43821462--43821498	14	2.8	14	84	12	51	64	2	0	32	1.07
43821655--43821681	5	5.4	5	100	0	54	77	0	0	22	0.76
43821654--43821693	14	2.8	14	84	3	53	72	0	0	27	0.85
43821281--43821976	110	6.4	110	89	6	907	57	3	5	33	1.36
43821765--43821791	5	5.4	5	100	0	54	77	0	0	22	0.76
43821764--43821803	14	2.8	14	84	3	53	72	0	0	27	0.85
43821776--43821988	62	3.4	62	71	6	214	61	1	2	33	1.21
43821875--43821916	5	8.4	5	100	0	84	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43821874--43821935	15	4.4	14	89	4	63	72	0	0	27	0.85
43822117--43822163	24	2.0	24	87	4	69	44	2	21	31	1.64
43824397--43824435	20	2.0	20	94	0	69	58	12	10	17	1.61
43824864--43824903	18	2.2	18	86	0	53	20	2	0	77	0.88
43824959--43824995	13	2.7	14	91	8	67	51	5	0	43	1.24
43825895--43825995	39	2.5	40	80	4	105	23	19	16	39	1.92
43832883--43833058	46	3.8	46	79	12	216	20	21	29	28	1.98
43832880--43833051	93	1.8	93	96	0	317	20	21	29	27	1.98
43840430--43840605	46	3.8	46	79	14	209	20	20	29	29	1.98
43840427--43840598	93	1.8	93	95	2	310	20	20	29	28	1.98
43843192--43843278	39	2.2	39	91	0	138	27	25	25	21	2.00
43846014--43846049	17	2.1	18	89	5	56	25	22	33	19	1.97
43846113--43846227	29	4.0	28	76	6	97	27	18	26	26	1.98
43846507--43846555	25	1.9	25	83	4	62	44	26	14	14	1.83
43851276--43851321	24	1.9	24	81	0	56	73	0	17	8	1.07
43851839--43851998	29	5.5	29	82	4	171	26	16	30	25	1.97
43853468--43853643	46	3.8	46	79	12	216	20	21	29	28	1.98
43853465--43853636	93	1.8	93	96	0	317	20	21	29	27	1.98
43861927--43862086	29	5.5	29	82	4	180	26	16	31	25	1.97
43864515--43864544	15	2.0	15	93	0	51	50	33	13	3	1.58
43877775--43877961	47	4.0	47	92	1	295	32	8	31	27	1.87
43890944--43891107	43	3.8	42	78	9	154	32	22	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43890944--43891070	43	3.0	42	80	7	157	33	22	16	27	1.96
43891516--43891561	17	2.7	17	96	0	83	54	19	0	26	1.44
43899772--43899817	23	2.0	23	100	0	92	34	4	21	39	1.73
43904381--43904583	44	4.7	43	80	12	220	32	25	16	25	1.96
43904951--43905112	43	3.8	43	76	16	156	32	27	17	22	1.97
43904953--43905112	86	1.9	85	85	8	227	31	26	18	23	1.97
43908287--43908404	41	2.9	40	74	8	103	27	12	27	32	1.93
43917860--43918066	24	8.6	24	96	0	342	36	25	17	20	1.95
43925599--43925803	24	8.6	24	94	2	333	36	25	18	20	1.95
43928201--43928542	47	7.3	47	93	0	558	27	29	8	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438