Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  332  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104084473--104084510
19
2.0
19
94
0
67
47
13
10
28
1.76
104085007--104085090
44
1.9
43
81
11
100
36
8
1
53
1.39
104085411--104085443
16
2.1
16
94
0
57
36
3
6
54
1.41
104086109--104086757
126
5.2
126
86
2
815
37
15
16
29
1.90
104092468--104092510
18
2.4
18
88
0
59
41
9
25
23
1.84
104106293--104106516
40
5.6
40
86
6
310
25
26
23
24
2.00
104106293--104106516
83
2.8
80
88
4
317
25
26
23
24
2.00
104114523--104114746
40
5.6
40
86
6
310
25
26
23
24
2.00
104114523--104114746
83
2.8
80
88
4
317
25
26
23
24
2.00
104117174--104117335
80
2.0
80
90
2
254
33
10
16
39
1.83
104118543--104118622
28
2.8
29
86
3
117
47
32
3
16
1.64
104118781--104118813
17
1.9
17
93
0
57
27
24
3
45
1.68
104119154--104119180
14
1.9
14
100
0
54
0
7
11
81
0.87
104139619--104139748
40
3.3
39
83
4
163
23
25
28
23
1.99
104144955--104144984
12
2.5
12
94
0
51
10
20
40
30
1.85
104145054--104145243
103
1.8
103
86
4
276
20
28
33
17
1.95
104148038--104148118
38
2.1
38
83
0
99
50
19
11
18
1.76
104147429--104148407
341
2.9
341
88
1
1444
43
15
11
28
1.83
104152034--104152107
38
1.9
38
94
0
130
45
27
12
14
1.80
104156510--104156567
30
1.9
30
82
6
73
22
13
6
56
1.61
104156728--104156771
20
2.1
21
84
12
56
29
0
0
70
0.88
104156734--104156967
24
10.2
22
65
19
70
33
1
0
63
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104156737--104156977
20
11.9
20
71
19
85
33
1
0
63
1.10
104156807--104156980
7
23.4
7
72
21
108
32
1
0
66
1.04
104156807--104156982
12
15.8
12
73
20
127
32
1
0
65
1.04
104156808--104156993
31
5.8
34
71
24
129
32
1
1
65
1.07
104157354--104157388
18
1.9
18
94
0
61
20
0
5
74
1.02
104157430--104157642
111
1.8
111
81
9
257
30
4
12
53
1.58
104168668--104169252
90
6.5
90
88
1
850
31
14
27
27
1.95
104168668--104169252
45
13.0
46
63
12
210
31
14
27
27
1.95
104170697--104170753
29
2.0
29
92
0
96
33
0
0
66
0.92
104170804--104170959
23
7.0
23
72
18
125
31
1
0
66
1.04
104170786--104170950
55
3.1
56
80
12
197
30
1
0
66
1.06
104171402--104171615
112
1.8
112
83
6
275
30
4
12
52
1.59
104172469--104172591
49
2.5
49
85
4
158
27
21
28
22
1.99
104176033--104176059
12
2.2
12
100
0
54
18
25
7
48
1.74
104176504--104176539
18
2.0
18
100
0
72
44
27
11
16
1.82
104176713--104176746
17
2.0
17
88
0
50
35
0
17
47
1.48
104176754--104176778
2
12.5
2
100
0
50
52
0
0
48
1.00
104176948--104177058
47
2.4
47
89
0
168
27
9
24
37
1.87
104179646--104179709
21
3.0
21
97
0
119
34
15
14
35
1.88
104183887--104183959
28
2.6
28
80
4
85
19
21
36
21
1.95
104194695--104194736
13
2.9
14
80
13
50
54
0
0
45
0.99
104194699--104194735
16
2.3
16
86
13
58
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104195260--104195302
14
3.1
14
86
0
59
44
11
2
41
1.53
104195374--104195444
19
3.8
19
69
9
56
23
1
8
66
1.28
104197632--104197666
15
2.3
15
90
0
52
25
2
2
68
1.17
104199225--104199264
17
2.3
18
86
8
64
17
5
47
30
1.69
104201998--104202034
17
2.1
18
90
5
58
70
2
0
27
1.01
104202013--104202051
20
2.0
20
89
0
60
64
5
2
28
1.28
104202132--104202157
12
2.2
12
100
0
52
50
7
15
26
1.71
104210901--104211022
46
2.6
47
84
5
147
26
22
14
36
1.93
104220009--104220054
22
2.0
23
91
4
76
76
0
23
0
0.79
104220007--104220064
17
3.3
17
76
13
64
77
0
22
0
0.77
104223249--104223377
44
2.8
45
82
4
152
34
13
24
27
1.93
104230638--104230766
44
2.8
45
82
4
152
34
13
24
27
1.93
104232489--104232543
24
2.3
25
84
12
80
78
0
21
0
0.76
104232487--104232535
22
2.5
20
87
12
66
77
0
22
0
0.77
104232494--104232538
23
2.0
22
86
8
63
75
0
24
0
0.80
104232493--104232543
12
4.4
11
79
20
59
78
0
21
0
0.75
104232560--104232601
5
8.4
5
87
10
50
80
0
4
14
0.86
104233716--104233771
21
2.7
22
83
8
64
25
0
5
69
1.09
104233742--104233800
26
2.4
24
83
10
75
28
0
3
67
1.06
104234650--104234704
19
2.9
19
71
12
51
69
7
1
21
1.23
104234650--104234744
37
2.6
38
78
11
99
67
6
1
25
1.21
104235918--104235944
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104238021--104238063
3
14.3
3
95
0
77
32
0
2
65
1.06
104238215--104238481
3
90.0
3
70
12
124
29
7
4
59
1.44
104238561--104238595
14
2.3
16
85
14
56
25
0
2
71
1.00
104242832--104242884
25
2.1
25
96
0
97
32
24
16
26
1.97
104242936--104243093
85
1.9
85
87
2
237
20
35
23
20
1.96
104243172--104243340
82
2.1
82
87
0
239
23
41
17
17
1.90
104243774--104243811
16
2.3
16
86
13
51
71
5
13
10
1.30
104245155--104245426
47
5.7
48
75
12
215
29
19
28
22
1.98
104246951--104247029
28
2.9
28
90
1
124
53
21
17
7
1.69
104247006--104247102
41
2.4
41
91
0
158
37
24
19
18
1.94
104248527--104248623
8
11.9
8
87
10
99
64
5
0
29
1.15
104248530--104248623
16
5.8
16
84
12
111
64
5
0
29
1.15
104254009--104254093
23
3.7
23
87
3
116
35
4
21
38
1.74
104264413--104264437
13
1.9
13
100
0
50
40
20
40
0
1.52
104269983--104270049
35
1.9
35
84
0
89
28
22
25
23
1.99
104271750--104271774
11
2.3
11
100
0
50
72
20
8
0
1.10
104277366--104277507
49
2.9
49
87
0
185
30
32
15
21
1.94
104287399--104287468
35
2.0
35
100
0
140
20
42
2
34
1.66
104288640--104288672
17
1.9
17
93
0
57
57
15
12
15
1.65
104301837--104301906
6
11.8
6
73
14
65
15
1
0
82
0.73
104301841--104301926
5
17.8
5
75
21
78
17
2
0
80
0.82
104301837--104301926
38
2.4
38
83
7
121
17
2
0
80
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104301839--104301926
43
2.0
43
86
4
124
17
2
0
80
0.81
104304750--104304782
13
2.6
13
90
4
50
39
0
12
48
1.40
104306070--104306097
2
14.0
2
100
0
56
50
0
0
50
1.00
104312346--104312405
8
7.6
8
75
16
54
70
1
25
3
1.12
104312346--104312405
15
3.8
16
75
14
54
70
1
25
3
1.12
104314267--104314292
2
13.0
2
100
0
52
50
0
0
50
1.00
104315482--104315532
2
25.5
2
95
0
93
52
0
0
47
1.00
104316846--104316940
28
3.4
28
84
8
131
27
22
9
41
1.84
104316833--104316940
56
2.0
54
87
7
155
27
23
11
37
1.88
104324530--104324556
2
13.5
2
100
0
54
51
0
0
48
1.00
104330415--104330459
22
2.0
22
83
8
56
8
8
4
77
1.10
104330464--104330496
11
3.1
11
91
8
59
54
0
0
45
0.99
104341690--104341726
19
2.0
20
89
10
60
32
2
8
56
1.43
104348377--104348661
136
2.1
136
97
1
536
31
24
19
24
1.98
104350441--104350576
26
5.2
26
96
0
236
36
24
5
33
1.78
104354348--104354556
64
3.2
64
63
18
156
30
26
17
25
1.98
104354314--104354597
135
2.1
136
97
0
534
31
25
19
24
1.98
104354844--104354895
25
2.0
26
82
10
63
25
15
23
36
1.93
104356372--104356507
26
5.2
26
94
0
236
36
25
5
33
1.78
104359036--104359084
20
2.7
18
77
22
57
51
2
2
44
1.24
104366195--104366369
46
3.8
46
78
11
205
29
28
21
21
1.99
104366203--104366373
93
1.8
93
92
2
290
28
28
21
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104370061--104370101
2
20.5
2
100
0
82
48
0
0
51
1.00
104370484--104370590
56
1.9
56
88
0
160
27
27
15
29
1.96
104374009--104374106
28
3.5
28
86
5
119
30
27
14
27
1.95
104381938--104382035
28
3.5
28
86
5
119
30
27
14
27
1.95
104383893--104383976
26
3.2
26
98
0
159
34
7
23
34
1.82
104385595--104385734
27
5.2
27
84
2
156
19
23
22
35
1.96
104385595--104385732
54
2.5
55
85
2
172
19
23
21
35
1.96
104386821--104386862
20
2.2
20
86
4
59
11
19
21
47
1.81
104388056--104388127
36
2.0
36
91
0
117
30
18
16
34
1.93
104389994--104390128
29
4.7
29
86
3
155
23
31
15
29
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438