Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  347  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108362347--108362554
40
5.2
40
82
2
202
25
23
25
25
2.00
108362349--108362554
80
2.6
80
83
3
236
25
23
26
24
2.00
108364882--108365047
39
4.1
40
66
22
89
59
6
4
30
1.40
108364905--108365066
39
4.0
40
70
21
97
59
6
3
30
1.37
108365292--108365378
3
29.3
3
72
17
67
65
1
3
29
1.16
108365290--108365370
12
6.5
12
77
9
74
64
1
3
30
1.19
108365292--108365378
38
2.3
38
83
11
101
65
1
3
29
1.16
108365707--108365766
20
3.0
19
80
11
59
58
31
1
8
1.38
108365705--108365781
21
3.5
22
78
18
81
61
29
1
7
1.32
108366291--108366709
44
9.6
44
78
6
429
26
23
18
31
1.97
108366377--108366777
132
3.1
132
95
1
734
24
23
19
31
1.98
108366232--108366777
44
12.4
43
74
11
269
25
23
18
32
1.97
108366279--108366746
88
5.3
87
73
9
414
25
23
18
31
1.97
108366821--108367019
68
2.9
68
86
2
267
28
21
23
27
1.99
108367091--108367926
43
19.4
43
71
11
338
20
21
22
35
1.96
108367124--108367789
130
5.2
132
83
8
782
19
22
21
36
1.95
108367338--108367880
173
3.2
170
75
10
514
19
22
22
35
1.96
108367423--108367925
216
2.3
217
93
2
863
19
22
22
35
1.96
108367990--108368113
66
1.9
66
96
0
230
35
12
20
32
1.89
108369254--108369305
1
52.0
1
76
0
50
0
0
11
88
0.52
108369256--108369306
6
9.0
6
83
16
65
0
0
13
86
0.58
108369231--108369300
30
2.3
29
82
7
77
4
2
11
81
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108369260--108369318
29
2.0
30
83
3
75
0
6
15
77
0.96
108372112--108372158
19
2.5
20
89
6
71
42
8
21
27
1.81
108374713--108374777
2
33.0
2
90
3
105
53
0
0
46
1.00
108374708--108374801
12
7.7
12
80
10
66
55
4
0
40
1.19
108375012--108375097
3
28.3
3
72
17
63
63
1
4
30
1.21
108375012--108375094
12
6.8
12
76
11
71
63
1
4
30
1.22
108375012--108375098
27
3.4
27
70
13
76
64
1
4
29
1.21
108375427--108375468
21
2.0
20
95
4
75
71
23
0
4
1.05
108375427--108375507
21
3.6
23
77
14
71
62
28
1
7
1.29
108385361--108385393
16
2.0
17
94
5
59
36
12
0
51
1.39
108385679--108385952
46
6.0
46
90
0
359
20
24
15
40
1.91
108388880--108388906
13
2.1
13
100
0
54
22
14
0
62
1.31
108391844--108391953
54
2.1
53
86
5
150
44
20
17
17
1.87
108391865--108391967
53
1.9
54
86
2
145
44
21
14
19
1.86
108393478--108393515
18
2.1
18
100
0
76
26
10
5
57
1.53
108393741--108393769
3
10.0
3
92
7
51
0
31
0
68
0.89
108393893--108393961
30
2.3
31
87
7
97
21
4
20
53
1.62
108394260--108394297
18
2.1
18
100
0
76
42
10
23
23
1.85
108397992--108398051
30
2.0
29
83
3
75
31
23
3
41
1.71
108404160--108404207
18
2.6
18
86
3
60
50
4
0
45
1.21
108404178--108404242
18
3.4
18
78
12
67
60
1
0
38
1.07
108407344--108407380
18
2.1
18
94
0
65
27
0
5
67
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108408428--108408528
41
2.5
41
82
4
132
35
14
22
26
1.93
108408628--108408671
21
2.1
21
95
0
79
20
31
4
43
1.72
108408685--108408771
25
3.5
25
76
6
86
17
34
17
31
1.93
108410674--108410816
39
3.7
39
87
0
214
37
14
10
37
1.81
108410748--108410811
18
3.4
18
73
12
65
39
14
4
42
1.66
108410711--108410814
18
5.4
18
68
13
64
37
13
9
39
1.77
108411979--108412040
30
2.1
28
91
5
97
48
6
1
43
1.38
108414362--108414403
13
3.2
13
90
6
66
0
23
0
76
0.79
108414618--108414649
5
6.4
5
92
0
55
56
0
3
40
1.15
108424544--108424704
29
5.6
29
82
2
182
24
16
32
25
1.96
108431752--108431854
29
3.6
29
93
0
170
25
15
33
26
1.95
108435578--108435802
47
4.8
46
73
17
173
27
17
28
26
1.98
108436793--108436858
28
2.4
28
94
0
114
16
18
45
19
1.86
108438699--108438861
39
3.9
39
82
14
200
23
19
29
26
1.98
108446620--108446777
40
4.0
40
89
0
244
24
18
27
29
1.98
108446635--108446803
80
2.1
80
82
0
194
24
20
27
27
1.99
108453097--108453144
24
2.0
24
95
0
87
18
20
27
33
1.96
108454332--108454494
46
3.5
46
82
5
161
29
17
28
25
1.97
108458851--108458896
21
2.2
21
92
0
74
10
23
36
28
1.89
108458824--108458896
21
3.7
19
72
18
60
12
28
31
27
1.93
108466566--108466637
25
2.9
25
93
0
117
20
27
1
50
1.57
108475487--108475524
20
1.9
20
88
0
58
55
2
7
34
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108477497--108477550
2
27.5
2
94
3
92
46
1
0
51
1.11
108477992--108478098
4
24.8
4
73
16
56
65
5
3
25
1.31
108478958--108479004
19
2.5
19
83
13
62
74
4
8
12
1.19
108479407--108479451
24
1.9
23
86
13
65
4
4
22
68
1.25
108486143--108486189
23
2.0
25
87
8
71
36
2
2
59
1.21
108486143--108486238
21
4.5
21
75
21
76
34
2
3
60
1.24
108486143--108486241
42
2.3
41
79
10
110
34
2
3
60
1.23
108486199--108486240
19
2.2
19
86
0
57
35
2
2
59
1.23
108486454--108486489
15
2.2
17
90
9
58
16
0
8
75
1.04
108487950--108488057
53
2.0
53
100
0
216
30
12
25
30
1.93
108497785--108497833
23
2.1
23
100
0
98
46
8
10
34
1.67
108498277--108498428
45
3.4
45
73
9
159
30
13
26
28
1.94
108498278--108498522
44
5.5
44
73
8
183
30
14
26
28
1.95
108498278--108498522
133
1.8
133
81
7
309
30
14
26
28
1.95
108499988--108500034
23
2.0
25
87
8
71
36
2
2
59
1.21
108499988--108500083
21
4.5
21
75
21
76
34
2
3
60
1.24
108499988--108500086
42
2.3
41
79
10
110
34
2
3
60
1.23
108500044--108500085
19
2.2
19
86
0
57
35
2
2
59
1.23
108500298--108500333
15
2.2
17
90
9
58
16
0
8
75
1.04
108500298--108500378
15
5.1
15
68
16
56
23
0
4
71
1.05
108503176--108503219
21
2.1
21
82
0
52
31
4
6
56
1.46
108503296--108503324
15
2.0
15
93
6
51
68
0
0
31
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108505391--108505421
9
3.4
9
95
0
53
48
22
6
22
1.73
108505391--108505425
9
3.9
9
96
0
52
51
20
5
22
1.68
108508654--108508696
11
3.7
11
93
6
68
76
2
2
18
1.00
108514808--108514878
10
6.9
10
76
17
74
66
2
11
19
1.36
108514841--108514883
22
2.0
22
100
0
86
60
4
16
18
1.52
108514893--108514930
13
2.8
13
88
4
58
44
13
0
42
1.43
108515523--108515560
3
12.7
3
100
0
76
31
0
0
68
0.90
108516873--108516917
13
3.5
13
84
6
65
71
0
0
28
0.87
108516871--108516922
20
2.8
18
78
16
61
73
0
0
26
0.84
108516871--108516923
13
4.3
12
86
9
63
73
0
0
26
0.83
108523280--108523350
10
6.9
10
75
12
72
67
1
11
19
1.29
108525563--108525601
19
2.2
17
86
9
51
38
0
17
43
1.50
108527577--108527769
94
2.1
94
91
1
307
36
23
11
27
1.90
108529291--108529503
108
2.0
108
90
0
336
37
27
15
19
1.92
108536442--108536480
6
6.8
6
97
2
64
89
10
0
0
0.48
108537897--108537975
39
2.0
39
97
0
149
48
25
11
15
1.78
108539312--108539347
11
3.3
11
92
0
54
72
0
8
19
1.10
108540214--108540249
15
2.5
14
86
8
54
38
0
0
61
0.96
108543808--108543838
16
1.9
16
93
0
53
9
9
9
70
1.33
108549884--108549921
20
1.9
20
84
10
51
57
5
10
26
1.53
108550935--108550964
13
2.3
13
100
0
60
66
0
0
33
0.92
108551241--108551582
115
3.0
113
87
5
469
35
10
8
45
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108552382--108552431
23
2.2
24
82
10
68
38
0
10
52
1.35
108552391--108552432
13
3.5
13
78
18
54
38
0
11
50
1.40
108552389--108552432
23
1.9
23
95
0
79
38
0
11
50
1.39
108561242--108561281
21
1.9
21
84
0
53
52
2
15
30
1.55
108561752--108561787
18
1.9
19
88
5
56
47
5
5
41
1.50
108561888--108561924
12
2.8
14
88
12
60
75
0
24
0
0.80
108561888--108561922
6
5.5
6
87
12
52
77
0
22
0
0.78
108562560--108562642
5
16.6
5
97
0
157
38
0
19
42
1.51
108563666--108563722
27
2.1
27
90
6
89
75
10
1
12
1.12
108563962--108564009
12
3.8
12
86
8
60
8
50
16
25
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438