genome.fa.s3.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  126  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37329816--37329922	39	2.7	39	86	2	151	26	20	28	24	1.99
37329822--37329951	40	3.3	40	89	3	183	23	22	29	24	1.99
37329821--37329986	79	2.1	79	78	6	176	24	21	28	26	1.99
37333642--37333771	40	3.2	40	82	4	165	23	23	28	24	2.00
37335150--37335528	154	2.5	152	83	5	447	24	24	18	32	1.97
37335962--37335995	18	1.9	18	88	5	52	20	38	23	17	1.93
37357113--37357149	17	2.1	18	85	14	51	24	5	2	67	1.25
37363432--37363496	33	2.0	32	88	5	96	52	3	0	44	1.16
37363519--37363591	26	2.7	27	70	8	69	45	1	1	52	1.18
37363574--37363616	14	3.1	14	80	10	52	37	0	0	62	0.95
37363753--37363817	32	2.0	32	100	0	130	44	21	6	27	1.76
37367656--37367713	30	1.9	30	85	0	80	29	24	12	34	1.91
37367842--37367891	25	2.0	25	96	0	91	14	16	18	52	1.76
37367846--37367900	25	2.2	25	86	0	74	16	20	14	49	1.80
37369941--37369986	23	2.0	23	86	0	65	41	4	6	47	1.49
37370394--37370438	16	2.8	16	75	3	54	42	4	0	53	1.21
37378488--37378644	56	2.8	54	84	7	192	28	33	17	19	1.95
37380976--37381012	2	18.5	2	100	0	74	51	0	0	48	1.00
37381973--37382002	10	3.0	10	95	0	51	50	43	0	6	1.28
37388858--37388968	40	2.8	40	85	0	159	44	11	18	26	1.83
37390600--37390653	25	2.2	25	86	6	74	66	9	9	14	1.43
37394637--37394794	40	4.0	40	91	0	235	37	12	22	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37398410--37398442	17	1.9	17	93	0	57	15	9	3	72	1.21
37398872--37398901	10	3.0	10	90	0	51	0	26	0	73	0.84
37398970--37399017	3	17.0	3	76	20	50	0	33	0	66	0.92
37398974--37399021	11	4.3	12	77	15	50	0	31	0	68	0.90
37398966--37399022	21	2.7	21	91	8	98	0	33	0	66	0.92
37402322--37402489	40	4.2	40	80	4	169	26	22	26	25	2.00
37410466--37410526	26	2.4	25	81	10	70	68	3	0	27	1.05
37410497--37410555	21	2.8	22	85	7	70	69	6	0	23	1.12
37410861--37410935	19	4.0	18	75	11	53	58	2	2	36	1.26
37411478--37411581	52	2.0	52	100	0	208	36	3	15	44	1.65
37411764--37411826	24	2.5	25	82	12	67	34	1	1	61	1.15
37412176--37412261	45	1.9	45	81	9	104	44	5	3	46	1.44
37415380--37415419	19	2.0	21	85	9	57	32	0	15	52	1.43
37415782--37416017	50	4.7	50	81	3	285	25	18	25	30	1.98
37415779--37416017	101	2.4	100	84	2	300	25	18	25	29	1.98
37417888--37417986	28	3.5	28	81	9	112	29	25	16	29	1.96
37421982--37422094	48	2.3	48	83	7	131	17	30	22	30	1.97
37423614--37423767	43	3.6	43	86	0	211	32	29	24	12	1.93
37423765--37423867	38	2.7	38	90	0	143	29	26	23	21	1.99
37430656--37430682	13	2.1	13	100	0	54	29	0	22	48	1.51
37433948--37434055	29	3.8	29	74	6	94	25	29	16	27	1.97
37434145--37434182	18	2.1	19	90	5	60	18	36	15	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37434155--37434191	19	1.9	19	88	0	56	16	37	18	27	1.92
37436719--37436750	16	2.0	16	93	0	55	28	6	15	50	1.68
37439986--37440087	27	3.8	26	76	7	80	16	22	21	39	1.92
37440592--37440624	15	2.1	16	88	5	50	48	18	12	21	1.80
37445988--37446156	46	3.7	46	77	16	186	28	28	20	21	1.98
37450221--37450321	27	3.8	26	75	3	85	20	24	20	33	1.97
37450430--37450484	28	2.0	28	85	7	76	20	23	23	32	1.98
37451523--37451635	29	3.9	30	80	10	130	27	30	15	26	1.95
37451525--37451635	58	1.9	57	83	8	145	27	30	15	27	1.96
37453426--37453539	45	2.6	42	82	8	113	25	25	23	25	2.00
37453869--37454066	43	4.6	43	94	0	342	30	33	24	11	1.91
37454059--37454142	38	2.2	38	82	0	105	32	25	20	22	1.98
37459590--37459637	24	1.9	26	83	8	64	37	18	0	43	1.51
37463525--37463568	21	2.1	21	82	0	52	25	13	15	45	1.83
37475568--37475881	46	6.6	48	74	12	213	22	29	18	28	1.98
37475848--37475915	34	2.0	34	97	0	127	27	26	16	29	1.97
37481946--37481995	25	2.0	25	100	0	100	40	16	8	36	1.77
37483242--37483535	38	7.0	38	71	19	183	31	15	23	29	1.95
37483279--37483490	47	4.7	47	80	10	253	31	15	23	30	1.95
37483322--37483528	85	2.4	85	93	0	342	31	14	24	29	1.95
37486635--37486676	15	2.8	15	85	0	57	16	19	14	50	1.79
37488918--37489128	47	4.7	47	77	10	242	31	15	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37489012--37489173	38	4.0	38	75	13	153	30	14	24	30	1.94
37488960--37489166	85	2.4	85	92	0	342	30	14	23	30	1.95
37491851--37491887	17	2.1	18	85	14	51	18	0	5	75	0.99
37494664--37494760	28	3.5	28	91	4	153	20	8	25	45	1.79
37495381--37495442	27	2.3	27	91	0	97	27	16	16	40	1.89
37495398--37495548	54	2.8	54	86	2	160	29	9	19	41	1.83
37495396--37495548	81	1.9	81	86	5	220	30	9	19	40	1.83
37495425--37495548	27	4.6	27	85	2	169	30	7	20	41	1.79
37495425--37495548	54	2.3	54	92	0	203	30	7	20	41	1.79
37495532--37495656	54	2.3	54	75	6	137	37	6	23	32	1.80
37495544--37495643	27	3.7	28	86	6	134	42	7	22	29	1.79
37495634--37495702	27	2.6	27	85	0	102	31	8	23	36	1.85
37498998--37499123	46	2.7	46	87	0	189	30	26	21	21	1.98
37504607--37504696	20	4.4	20	75	2	81	14	31	20	34	1.92
37505437--37505477	17	2.4	17	100	0	82	19	14	34	31	1.92
37506875--37506921	20	2.3	20	96	0	85	38	12	8	40	1.74
37507079--37507205	23	5.4	23	71	16	82	35	22	19	22	1.96
37508436--37508533	41	2.4	41	98	0	187	38	28	7	25	1.82
37512588--37512632	20	2.1	21	84	8	56	64	2	22	11	1.36
37515092--37515195	27	3.9	27	73	5	93	39	23	8	28	1.84
37515085--37515223	54	2.6	53	81	5	145	37	23	10	28	1.88
37515148--37515225	27	2.9	27	77	5	95	37	19	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37515152--37515236	27	3.1	27	73	9	84	41	17	10	30	1.83
37517105--37517275	27	6.4	27	84	0	218	34	20	20	24	1.96
37517899--37517950	27	2.0	26	84	3	68	17	26	21	34	1.95
37517880--37518055	67	2.6	67	95	0	307	18	28	21	30	1.97
37517970--37518153	98	1.9	98	86	2	262	22	26	18	32	1.97
37518068--37518206	67	2.1	67	84	2	181	22	25	20	32	1.98
37517903--37518207	165	1.8	165	88	1	468	20	26	20	32	1.97
37524628--37524827	27	7.4	27	86	2	267	35	19	20	24	1.96
37525458--37525642	67	2.7	67	90	0	280	21	27	21	29	1.98
37529458--37529518	31	2.0	31	100	0	122	42	26	9	21	1.84
37546304--37546432	46	2.8	46	89	2	188	31	28	19	20	1.97
37548360--37548439	15	5.4	15	73	18	69	61	12	15	11	1.57
37548369--37548448	30	2.7	30	81	11	92	58	13	15	12	1.63
37548371--37548448	15	5.2	15	72	20	56	58	14	14	12	1.63
37551185--37551264	15	5.4	15	73	18	69	61	12	15	11	1.57
37551194--37551273	30	2.7	30	81	11	92	58	13	15	12	1.63
37551196--37551273	15	5.2	15	72	20	56	58	14	14	12	1.63
37554166--37554297	46	2.8	49	86	10	172	28	29	22	19	1.98
37556178--37556255	14	5.4	15	72	18	58	60	14	15	10	1.59
37556179--37556264	29	3.0	28	82	12	97	58	16	15	10	1.63
37561181--37561257	14	5.4	15	72	16	56	61	12	15	10	1.57
37561182--37561266	29	3.0	28	80	11	86	58	15	15	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37566192--37566271	15	5.4	15	73	18	69	61	12	15	11	1.57
37566201--37566280	30	2.7	30	81	11	92	58	13	15	12	1.63
37566203--37566280	15	5.2	15	72	20	56	58	14	14	12	1.63
37571295--37571374	15	5.4	15	73	18	69	61	12	15	11	1.57
37571304--37571383	30	2.7	30	79	14	85	58	12	15	13	1.63
37574300--37574469	46	3.7	46	73	14	161	31	29	18	20	1.96
37574351--37574481	47	2.8	45	73	11	122	29	29	19	21	1.98
37580387--37580497	55	2.0	55	100	0	222	30	27	18	24	1.97
37592264--37592379	58	2.0	58	100	0	232	32	18	5	43	1.73
37596674--37596840	40	4.2	40	82	2	185	24	26	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438