Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  133  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39526267--39526324
30
1.9
30
86
6
82
22
34
24
18
1.96
39536930--39537006
28
2.8
28
82
4
84
28
28
11
31
1.92
39542565--39542621
23
2.4
25
72
13
59
54
0
0
45
0.99
39544362--39544421
18
3.2
19
88
4
77
46
0
30
23
1.52
39544370--39544434
19
3.4
19
81
10
62
50
0
24
24
1.49
39550059--39550112
27
2.0
27
100
0
108
22
11
7
59
1.56
39566535--39566637
29
3.6
28
81
5
116
21
16
33
29
1.95
39573115--39573160
19
2.5
19
86
6
60
47
0
8
43
1.34
39573253--39573281
15
1.9
15
100
0
58
41
0
0
58
0.98
39575346--39575496
40
3.8
40
79
6
155
26
23
27
22
2.00
39575383--39575512
40
3.2
40
80
2
154
23
23
27
24
2.00
39583347--39583497
40
3.8
40
79
6
155
26
23
27
22
2.00
39583384--39583513
40
3.2
40
80
2
154
23
23
27
24
2.00
39591294--39591340
3
15.7
3
100
0
94
65
0
0
34
0.93
39595741--39595911
46
3.7
46
82
6
202
29
19
27
22
1.98
39596033--39596093
31
2.0
31
96
0
113
22
21
26
29
1.99
39599375--39599428
27
2.0
27
85
0
72
38
7
14
38
1.75
39599674--39599855
49
3.7
49
83
2
256
26
19
25
28
1.99
39599676--39599868
100
1.9
100
95
0
350
27
19
24
27
1.99
39618047--39618435
47
8.3
47
92
0
616
27
29
8
34
1.87
39618357--39618432
22
3.3
22
66
16
64
26
30
10
32
1.90
39621872--39621918
20
2.3
20
92
7
78
36
10
19
34
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39621968--39622040
27
2.8
27
95
4
132
27
20
23
28
1.99
39629724--39629905
6
30.5
6
93
0
303
17
2
0
80
0.82
39629740--39629882
1
143.0
1
67
0
61
17
0
0
82
0.67
39631069--39631289
6
36.8
6
98
0
388
17
30
16
35
1.92
39635684--39635718
15
2.3
15
85
0
52
20
11
14
54
1.70
39635942--39636312
6
61.8
6
92
1
591
17
18
15
48
1.81
39638390--39638431
10
4.1
10
80
14
50
54
28
0
16
1.42
39639154--39639301
42
3.5
42
80
11
142
29
25
20
24
1.99
39640757--39640831
31
2.4
31
93
0
132
34
20
17
28
1.95
39641781--39641821
19
2.2
19
86
0
55
75
0
2
21
0.92
39643570--39643875
44
6.7
44
69
14
161
30
20
16
32
1.94
39643614--39643893
95
3.0
94
80
6
273
31
20
16
31
1.95
39643493--39643793
139
2.2
139
82
2
363
31
20
15
32
1.94
39643727--39643895
93
1.8
93
89
2
268
32
22
16
28
1.96
39651269--39651314
23
2.0
23
84
12
60
45
10
6
36
1.65
39651276--39651320
23
2.0
23
82
8
56
40
13
8
37
1.76
39655460--39655607
41
3.6
41
80
7
176
22
22
28
26
1.99
39655462--39655629
41
4.1
41
72
14
132
23
20
29
26
1.99
39659785--39660002
40
5.5
40
87
4
284
22
22
28
26
1.99
39667224--39667370
41
3.6
41
79
8
167
23
21
28
26
1.99
39674405--39674494
46
2.0
46
88
4
137
21
16
28
33
1.95
39677520--39677702
27
6.8
27
85
3
235
29
24
7
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39677505--39677702
81
2.5
81
88
3
276
28
24
8
38
1.84
39677734--39677884
54
2.8
54
81
6
157
41
21
8
29
1.82
39677701--39677872
27
6.4
26
75
9
141
40
19
10
29
1.85
39677734--39677882
81
1.9
80
84
7
203
41
20
8
28
1.82
39677813--39677942
27
4.7
27
78
12
113
43
18
7
30
1.78
39677785--39677946
27
5.9
27
76
9
98
40
17
9
31
1.83
39678002--39678064
27
2.3
27
81
5
74
36
19
22
22
1.95
39678873--39678942
25
2.8
25
93
0
113
25
27
22
24
2.00
39678872--39678955
25
3.4
24
83
8
98
28
23
22
25
1.99
39679090--39679223
42
3.2
42
97
0
250
32
14
19
33
1.92
39679247--39679361
31
3.7
31
95
3
198
28
16
26
28
1.97
39681224--39681369
40
3.7
40
84
0
175
24
27
21
26
2.00
39681256--39681407
40
3.8
40
84
5
164
23
25
22
28
1.99
39683453--39683483
16
1.9
16
93
0
53
54
6
6
32
1.51
39684224--39684249
13
2.0
13
100
0
52
46
38
7
7
1.61
39684915--39684952
2
19.0
2
89
10
60
50
0
2
47
1.15
39687273--39687328
29
1.9
29
85
0
76
21
32
23
23
1.98
39687722--39687777
25
2.2
26
84
9
71
76
3
16
3
1.06
39698395--39698501
42
2.5
42
95
0
187
28
14
33
23
1.93
39698509--39698578
27
2.5
28
86
2
97
27
14
25
32
1.94
39705626--39705732
42
2.5
42
96
0
196
28
14
33
22
1.94
39705740--39705809
27
2.5
28
86
2
97
27
14
25
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39708763--39709041
139
2.0
139
85
4
375
37
15
19
27
1.92
39709452--39709505
28
1.9
28
96
0
99
29
12
20
37
1.90
39713124--39713148
5
5.0
5
100
0
50
40
0
0
60
0.97
39713303--39713444
72
2.0
72
100
0
284
33
3
18
44
1.67
39713320--39713468
72
2.1
72
84
2
192
38
4
19
38
1.71
39715854--39715882
12
2.4
12
100
0
58
44
0
0
55
0.99
39733033--39733080
21
2.3
21
100
0
96
29
6
8
56
1.53
39738771--39738833
29
2.2
29
91
5
101
20
30
33
15
1.94
39741474--39741543
35
2.0
35
97
0
131
45
21
17
15
1.85
39748555--39748630
22
3.3
22
66
16
64
32
10
30
26
1.90
39748520--39748722
47
4.3
47
89
3
295
33
9
29
27
1.88
39748793--39748877
40
2.2
40
86
2
118
17
21
31
29
1.96
39750939--39750989
25
2.0
25
96
0
93
29
25
7
37
1.84
39755970--39756138
39
4.3
39
88
6
209
25
27
21
25
1.99
39763441--39763473
17
1.9
17
88
11
50
42
6
0
51
1.26
39764584--39764646
31
2.2
28
83
11
74
12
6
4
76
1.14
39771482--39771651
50
3.5
46
74
14
123
28
20
27
24
1.99
39771482--39771659
49
3.7
47
75
13
141
28
20
26
24
1.99
39779537--39779577
21
2.0
21
85
0
55
21
17
41
19
1.90
39787501--39787563
24
2.6
24
97
0
117
34
25
17
22
1.95
39795343--39795388
24
1.9
24
100
0
92
41
23
13
21
1.88
39802519--39802629
39
2.8
39
90
2
170
27
9
5
58
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39805691--39805747
20
2.8
20
97
0
105
15
29
29
24
1.96
39806383--39806416
2
17.0
2
100
0
68
50
0
0
50
1.00
39808626--39808755
40
3.2
40
82
2
172
24
27
23
24
2.00
39808626--39808792
80
2.1
79
82
7
196
23
26
22
26
2.00
39812706--39812777
37
1.9
37
88
0
108
27
27
19
25
1.99
39812924--39813060
50
2.8
49
85
6
197
30
24
7
37
1.83
39813030--39813223
47
4.1
47
89
0
280
27
29
10
32
1.90
39813123--39813194
22
3.1
22
66
24
58
25
29
12
33
1.92
39812983--39813223
94
2.5
93
84
4
288
27
29
9
33
1.89
39815041--39815098
28
2.1
28
100
0
116
25
29
10
34
1.89
39817032--39817069
17
2.2
17
86
9
51
63
2
28
5
1.30
39817031--39817070
18
2.3
17
82
4
53
65
2
27
5
1.27
39819881--39819906
13
2.0
13
100
0
52
30
0
23
46
1.53
39826477--39826575
28
3.5
28
87
4
119
27
15
27
30
1.96
39831489--39831545
28
2.0
28
100
0
114
17
14
31
36
1.89
39834505--39834603
28
3.5
28
87
4
119
27
15
27
30
1.96
39845757--39845942
94
2.0
94
88
0
273
23
28
25
22
1.99
39849518--39849542
13
1.9
13
100
0
50
32
4
24
40
1.73
39850614--39850749
42
3.2
44
74
11
120
25
16
23
34
1.95
39850880--39850934
27
2.0
27
96
0
101
27
7
25
40
1.82
39852515--39852574
30
2.0
30
96
0
111
48
16
10
25
1.77
39854251--39854286
6
6.0
6
86
0
54
77
0
2
19
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39854253--39854298
12
3.9
12
77
11
51
73
0
4
21
1.00
39854254--39854298
18
2.6
18
89
3
65
73
0
4
22
1.01
39857767--39857815
17
2.8
18
74
22
50
24
18
22
34
1.96
39858638--39858804
40
4.2
40
79
6
169
25
21
27
25
1.99
39865770--39865818
17
2.8
18
74
22
50
24
18
22
34
1.96
39866639--39866804
40
4.2
39
77
9
158
25
21
27
24
1.99
39868415--39868463
25
2.0
25
84
4
64
63
8
0
28
1.23
39868427--39868491
25
2.9
23
80
15
66
66
7
0
26
1.19
39868453--39868491
19
2.0
20
90
5
62
71
7
0
20
1.10
39873395--39873425
16
1.9
16
93
0
53
35
22
0
41
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438