genome.fa.s3.2.7.7.80.10.50.1000.348.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  348  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108565131--108565156	2	13.0	2	100	0	52	50	0	0	50	1.00
108565683--108565709	14	1.9	14	100	0	54	44	0	3	51	1.19
108567327--108567367	21	2.0	21	90	0	64	17	34	24	24	1.96
108568574--108568635	21	3.0	21	88	4	92	41	19	24	14	1.88
108573119--108573401	18	15.3	18	70	11	142	36	15	12	35	1.86
108573119--108573401	36	7.6	36	70	10	185	36	15	12	35	1.86
108573200--108573402	72	2.8	71	80	3	219	36	15	12	35	1.85
108573487--108573598	59	1.9	58	83	1	143	39	23	19	17	1.92
108573569--108573763	45	4.3	45	90	0	291	40	21	19	19	1.92
108574183--108574219	11	3.5	11	92	3	58	40	21	0	37	1.54
108574188--108574219	16	1.9	17	93	6	57	43	18	0	37	1.51
108575497--108575527	4	7.5	4	92	7	53	0	29	0	70	0.87
108575570--108575604	9	4.0	9	88	7	54	17	11	0	71	1.14
108575570--108575604	17	2.0	18	94	5	63	17	11	0	71	1.14
108582990--108583024	17	2.0	18	88	5	54	65	0	0	34	0.93
108583109--108583134	2	13.0	2	100	0	52	50	0	0	50	1.00
108589472--108589524	16	3.3	16	89	0	79	39	7	24	28	1.82
108589705--108589828	58	2.1	58	88	2	178	53	3	0	43	1.17
108595874--108595944	35	2.0	35	97	0	133	25	2	25	46	1.66
108599828--108599932	55	1.9	55	94	0	183	37	13	17	32	1.88
108610047--108610121	28	2.6	28	80	16	82	61	2	2	33	1.24
108610425--108610463	21	2.0	21	90	10	64	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108610444--108610488	20	2.3	20	85	11	58	40	0	4	55	1.20
108610429--108610488	21	2.9	21	80	9	52	38	0	3	58	1.15
108612131--108612185	25	2.2	26	80	9	60	30	9	0	60	1.28
108612449--108612513	27	2.4	27	80	12	64	55	1	4	38	1.30
108613788--108613828	19	2.2	19	90	0	64	21	0	4	73	1.02
108620881--108620914	2	17.0	2	100	0	68	50	0	0	50	1.00
108632383--108632452	36	1.9	37	88	2	106	45	4	1	48	1.30
108633494--108633595	11	10.0	10	77	15	61	68	1	25	3	1.17
108633492--108633582	48	1.9	47	88	6	139	68	2	27	2	1.13
108633489--108633571	3	29.3	3	73	20	72	68	2	27	1	1.09
108633489--108633582	20	4.8	20	74	20	74	68	2	27	2	1.13
108633704--108633734	16	1.9	16	93	0	53	41	12	16	29	1.85
108638471--108638501	16	1.9	16	93	0	53	41	12	16	29	1.85
108640194--108640236	21	2.0	21	86	0	59	27	23	20	27	1.99
108646314--108646339	13	2.0	13	100	0	52	38	0	0	61	0.96
108646973--108647078	45	2.4	45	83	0	140	24	18	15	41	1.89
108647061--108647103	18	2.3	18	84	4	50	25	20	13	39	1.90
108653164--108653221	5	11.6	5	100	0	116	39	0	0	60	0.97
108653852--108653876	12	2.1	12	100	0	50	16	24	20	40	1.91
108653854--108653960	45	2.4	45	87	3	153	20	19	18	41	1.91
108655672--108655717	13	3.5	13	80	14	51	54	2	0	43	1.12
108658425--108658454	15	2.0	15	100	0	60	13	26	40	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108664963--108665174	52	4.2	52	76	9	185	25	17	27	29	1.98
108667193--108667379	89	2.1	89	98	1	367	35	12	28	23	1.92
108671254--108671291	2	19.0	2	100	0	76	50	0	0	50	1.00
108671594--108671631	3	12.7	3	100	0	76	68	0	0	31	0.90
108671784--108671869	3	29.0	3	72	15	54	60	2	9	27	1.40
108672151--108672192	2	21.0	2	95	0	75	47	0	2	50	1.14
108672864--108673139	97	2.9	97	80	0	329	27	25	18	29	1.98
108674463--108674516	27	2.0	27	85	0	72	38	7	14	38	1.75
108674770--108675006	50	4.8	49	79	5	253	27	17	24	29	1.97
108674770--108675006	99	2.4	99	82	4	273	27	17	24	29	1.97
108676738--108677027	89	3.2	90	74	9	304	27	21	20	31	1.98
108676738--108677073	179	1.9	178	89	0	519	27	21	19	32	1.97
108676767--108677073	89	3.4	87	75	7	296	27	21	17	33	1.96
108676925--108677421	132	3.8	129	78	6	439	25	23	20	30	1.98
108678656--108678721	24	2.6	25	76	7	71	9	7	6	77	1.13
108684315--108684443	53	2.5	53	82	6	147	25	19	27	27	1.99
108685833--108685977	38	3.8	39	85	5	154	31	22	20	25	1.98
108685833--108685977	76	1.9	76	84	0	191	31	22	20	25	1.98
108691364--108691486	46	2.8	44	85	8	153	24	30	21	22	1.99
108691492--108691634	38	3.8	38	93	0	214	29	24	23	23	1.99
108697004--108697187	40	4.6	39	74	9	149	24	26	23	25	2.00
108710112--108710279	40	4.2	40	77	3	151	23	26	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108714692--108714822	57	2.3	57	84	3	167	53	3	0	43	1.16
108719277--108719320	23	1.9	23	81	9	54	40	18	0	40	1.50
108723021--108723121	28	3.5	28	86	6	114	29	26	13	29	1.94
108725285--108725434	41	3.8	40	80	6	117	34	21	22	22	1.97
108726047--108726095	24	2.0	24	96	0	89	53	2	4	40	1.32
108726143--108726182	2	20.0	2	94	0	71	52	0	0	47	1.00
108726477--108726516	21	1.9	21	100	0	80	75	5	0	20	0.99
108726928--108726979	14	3.8	13	80	7	59	59	1	1	36	1.19
108729041--108729191	81	1.9	81	83	5	198	22	9	21	46	1.80
108732700--108732831	27	4.9	26	80	7	140	35	21	23	18	1.96
108732726--108732830	54	2.0	53	94	1	183	36	22	22	18	1.95
108732937--108732999	26	2.3	26	83	5	72	30	11	25	33	1.90
108734437--108734544	26	4.2	26	93	0	189	36	24	7	32	1.83
108739734--108739892	27	5.9	27	82	11	175	34	20	24	20	1.96
108739752--108739892	54	2.6	54	92	2	230	34	21	24	19	1.96
108741500--108741607	26	4.2	26	93	0	189	36	24	7	32	1.83
108744362--108744425	25	2.6	25	87	5	85	45	12	20	21	1.84
108744546--108744653	27	4.0	26	88	5	144	36	21	24	18	1.95
108744812--108744876	22	3.0	22	80	8	78	32	23	23	21	1.98
108745252--108745305	27	2.0	27	92	0	90	22	5	24	48	1.72
108745255--108745314	27	2.2	27	84	0	75	26	6	18	48	1.72
108747313--108747404	25	3.7	25	83	0	103	48	8	19	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108747522--108747625	27	3.9	26	82	6	127	39	19	22	19	1.93
108747762--108747823	22	2.8	23	87	7	92	30	19	27	22	1.98
108748201--108748342	27	5.3	27	82	0	176	25	20	18	35	1.95
108748205--108748342	54	2.6	54	90	1	206	25	21	17	36	1.94
108748326--108748618	27	10.9	27	78	5	173	29	7	22	39	1.82
108748326--108748591	54	4.9	53	75	8	198	29	7	22	40	1.81
108748387--108748612	81	2.8	80	78	6	215	28	8	20	42	1.81
108748575--108748628	27	2.0	27	85	3	74	35	9	16	38	1.81
108756828--108757008	79	2.3	80	82	8	217	25	27	21	24	1.99
108756826--108757010	40	4.7	40	81	7	225	26	27	21	24	1.99
108764866--108765050	39	4.8	39	80	8	157	25	27	20	26	1.99
108764912--108765060	75	2.0	77	85	6	207	26	28	19	26	1.99
108764885--108765061	39	4.6	37	79	10	171	25	28	20	25	1.99
108769107--108769318	79	2.7	80	82	8	263	25	21	27	26	1.99
108769107--108769314	40	5.2	40	84	7	262	24	21	27	25	1.99
108773326--108773508	79	2.3	81	85	7	241	25	27	22	24	2.00
108773305--108773508	40	5.1	40	83	8	247	25	27	22	24	1.99
108781413--108781593	77	2.3	81	84	7	239	25	27	22	24	2.00
108781392--108781593	40	5.1	40	80	10	229	25	27	22	24	2.00
108784490--108784552	24	2.6	24	87	0	81	26	22	6	44	1.76
108784971--108785005	17	2.1	17	100	0	70	34	11	11	42	1.77
108788272--108788373	37	2.8	37	93	0	177	44	27	10	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108788260--108788386	37	3.5	37	89	1	175	45	28	9	16	1.78
108791407--108791594	46	4.1	46	90	0	277	25	30	8	35	1.86
108791568--108791895	47	7.0	47	93	1	534	25	28	11	33	1.92
108798485--108798534	12	3.9	13	76	12	59	62	0	4	34	1.14
108798555--108798607	13	4.2	13	74	16	58	56	0	7	35	1.28
108798564--108798615	23	2.4	22	76	17	56	55	0	5	38	1.24
108798394--108798641	19	13.1	19	65	22	71	58	3	4	33	1.35
108798598--108798647	14	3.6	14	75	8	57	62	4	0	34	1.14
108798605--108798656	24	2.2	24	86	6	70	57	7	0	34	1.27
108798690--108798727	19	2.0	19	89	0	58	63	0	7	28	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438