genome.fa.s3.2.7.7.80.10.50.1000.334.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  334  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104671040--104671260	40	5.6	41	79	11	230	24	24	27	23	2.00
104679063--104679247	40	4.6	40	79	8	198	24	24	28	23	2.00
104679063--104679247	80	2.3	81	86	6	243	24	24	28	23	2.00
104681569--104681864	149	2.0	149	86	1	414	23	21	21	33	1.97
104684157--104684182	13	2.0	13	100	0	52	23	15	30	30	1.95
104684799--104684823	5	5.0	5	100	0	50	80	0	0	20	0.72
104685715--104685761	21	2.2	22	88	3	69	34	4	0	61	1.15
104685782--104685830	17	3.0	16	82	11	64	32	0	10	57	1.32
104685789--104685828	15	2.6	15	84	4	53	32	0	7	60	1.25
104686438--104686474	2	19.0	2	88	5	58	45	0	2	51	1.15
104686872--104686910	19	2.1	19	85	0	51	46	7	2	43	1.46
104694411--104694562	40	3.8	40	83	5	164	23	28	22	26	1.99
104702252--104702404	40	3.8	40	80	3	146	24	28	21	25	1.99
104709973--104710523	86	6.5	85	78	8	502	27	17	19	36	1.94
104709979--104710452	161	2.8	165	79	8	487	27	17	20	34	1.95
104710064--104710523	249	1.8	248	85	5	651	28	16	19	35	1.94
104710314--104710561	86	2.8	85	81	6	264	26	16	19	37	1.92
104711795--104711826	16	2.0	16	93	0	55	87	3	3	6	0.73
104712287--104712344	29	2.0	29	89	0	89	22	20	22	34	1.97
104712439--104712485	18	2.7	18	90	6	71	34	6	0	59	1.23
104712506--104712554	17	3.0	16	82	11	64	32	0	10	57	1.32
104712513--104712552	15	2.6	15	84	4	53	32	0	7	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104712623--104712662	19	2.1	19	85	4	53	32	12	2	52	1.52
104713156--104713196	2	21.0	2	95	5	75	48	0	0	51	1.00
104713594--104713632	19	2.1	19	85	0	51	46	7	2	43	1.46
104717401--104717428	4	7.0	4	100	0	56	25	25	0	50	1.50
104718248--104718288	21	2.0	21	85	0	55	78	12	4	4	1.07
104718753--104718810	29	2.0	29	89	0	89	20	18	24	36	1.95
104718905--104718951	18	2.7	18	87	6	62	36	4	0	59	1.17
104718972--104719020	17	3.0	16	82	11	64	32	0	10	57	1.32
104718979--104719018	15	2.6	15	84	4	53	32	0	7	60	1.25
104719628--104719664	2	19.0	2	88	5	58	45	0	2	51	1.15
104719556--104719664	57	1.9	55	82	12	132	36	3	6	53	1.44
104722039--104722081	13	3.5	13	81	18	65	48	16	0	34	1.46
104722037--104722082	23	2.0	23	100	0	92	47	17	0	34	1.48
104722041--104722090	23	2.2	23	89	7	75	54	14	0	32	1.40
104724256--104724332	31	2.5	32	77	10	88	40	0	3	55	1.18
104724297--104724341	11	3.9	11	80	11	54	35	0	2	62	1.08
104726189--104726341	62	2.5	62	95	0	270	30	22	24	22	1.99
104726525--104726890	46	8.0	46	92	1	520	39	14	24	21	1.90
104727176--104727208	17	2.0	17	94	5	59	48	0	15	36	1.45
104728493--104728523	2	15.5	2	100	0	62	48	0	0	51	1.00
104728967--104729197	24	9.6	24	96	0	381	20	18	25	35	1.95
104736267--104736300	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104736749--104736953	24	8.6	24	95	1	324	20	18	25	35	1.95
104736749--104736953	95	2.2	95	90	1	322	20	18	25	35	1.95
104739311--104739335	10	2.5	10	100	0	50	76	8	0	16	1.02
104745214--104745275	32	1.9	32	96	0	115	40	24	3	32	1.71
104745214--104745296	32	2.6	32	86	3	96	40	22	3	32	1.71
104750112--104750142	12	2.6	12	100	0	62	12	51	25	9	1.70
104752206--104752404	40	5.0	40	78	3	159	20	25	23	30	1.99
104756531--104756595	32	2.0	32	96	0	121	38	23	6	32	1.79
104756535--104756616	32	2.6	31	84	11	87	40	21	4	32	1.75
104759932--104759971	21	2.0	20	85	5	53	37	0	20	42	1.52
104761479--104761516	20	2.0	20	89	5	60	39	2	13	44	1.57
104761790--104761830	18	2.2	18	91	8	64	68	0	31	0	0.90
104762657--104762688	6	5.3	6	100	0	64	18	18	15	46	1.84
104762657--104762694	18	2.1	18	90	0	58	18	23	13	44	1.85
104766493--104766602	26	4.2	26	92	0	166	35	24	5	34	1.79
104767286--104767412	40	3.2	39	82	10	141	18	25	32	23	1.97
104767836--104767911	40	1.9	38	84	5	98	48	5	1	44	1.33
104768155--104768188	16	2.1	16	88	0	50	61	0	0	38	0.96
104771410--104771998	47	12.6	47	72	13	371	21	29	20	28	1.98
104771500--104771998	140	3.6	136	74	11	325	20	29	20	28	1.98
104771359--104771996	187	3.4	187	92	0	1055	21	29	19	29	1.98
104775687--104775719	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104779338--104779632	149	2.0	149	87	0	428	33	22	22	22	1.98
104781459--104781501	13	3.5	13	81	18	65	48	16	0	34	1.46
104781457--104781502	23	2.0	23	100	0	92	47	17	0	34	1.48
104785297--104785339	13	3.5	13	75	18	56	34	2	16	46	1.60
104794291--104794352	31	2.0	30	93	3	106	16	25	3	54	1.56
104796751--104796935	92	2.0	93	92	1	309	18	11	13	56	1.66
104797374--104797448	25	3.0	25	98	0	141	28	29	4	38	1.75
104799628--104799689	26	2.3	27	83	2	81	61	3	3	32	1.28
104800315--104800352	13	3.0	13	84	3	51	60	0	0	39	0.97
104811814--104811973	29	5.5	30	88	8	222	33	13	25	27	1.94
104811814--104811973	59	2.8	57	89	4	223	33	13	25	27	1.94
104819716--104819875	29	5.5	30	88	8	222	33	13	25	27	1.94
104819716--104819875	59	2.8	57	89	4	223	33	13	25	27	1.94
104821464--104821630	54	3.1	54	82	3	158	28	19	16	36	1.93
104821495--104821640	54	2.7	53	82	4	166	26	18	17	37	1.93
104821642--104821755	54	2.1	54	85	0	147	26	19	14	39	1.90
104821824--104821871	19	2.6	19	83	3	62	41	2	10	45	1.50
104821895--104821978	42	2.0	42	92	0	141	29	10	13	46	1.76
104826848--104826929	33	2.3	39	81	12	95	51	0	12	36	1.40
104827322--104827377	22	2.5	22	94	0	94	8	0	55	35	1.31
104827333--104827425	13	7.8	13	78	18	103	8	0	53	37	1.32
104827333--104827431	35	2.8	35	95	0	171	9	0	54	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104827322--104827431	22	4.8	22	72	14	89	10	0	54	35	1.34
104827508--104827552	15	2.9	15	86	3	54	6	4	37	51	1.49
104827923--104829006	206	5.3	206	95	0	1909	28	22	19	29	1.98
104830381--104830586	40	5.2	40	85	2	272	27	28	21	23	1.99
104835335--104835516	39	4.6	39	88	0	238	23	31	21	23	1.98
104835365--104835517	39	3.9	39	91	0	243	24	32	20	23	1.98
104842414--104842595	39	4.6	39	89	0	247	23	31	21	23	1.98
104842444--104842596	39	3.9	39	92	0	252	23	32	20	23	1.98
104845602--104845867	46	6.0	46	86	7	343	21	24	15	38	1.92
104845781--104845856	38	2.0	38	100	0	152	23	26	18	31	1.97
104855375--104855676	40	7.6	40	93	1	509	28	25	22	23	1.99
104857163--104857288	46	2.7	46	95	0	216	21	22	26	29	1.99
104865452--104865751	40	7.6	40	92	2	491	29	25	22	23	1.99
104865452--104865751	119	2.5	120	91	3	491	29	25	22	23	1.99
104870112--104870193	33	2.3	39	81	12	95	51	0	12	36	1.40
104870178--104870219	19	2.3	18	87	4	57	69	2	2	26	1.13
104870701--104870745	15	2.9	15	86	3	54	6	4	37	51	1.49
104870811--104870858	19	2.6	18	87	9	69	39	4	12	43	1.62
104871066--104871310	54	4.6	54	76	5	201	25	22	14	37	1.92
104871066--104871310	107	2.3	108	78	4	255	25	22	14	37	1.92
104871066--104871357	54	5.4	52	75	6	192	25	22	14	37	1.92
104871474--104871528	27	2.0	27	100	0	110	38	7	25	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104871709--104871868	54	2.9	54	80	8	146	28	23	13	35	1.92
104871641--104872005	108	3.4	108	76	4	254	27	22	14	35	1.93
104871747--104871921	54	3.3	53	78	8	147	30	23	12	33	1.92
104874422--104874659	54	4.4	54	74	7	180	26	20	15	36	1.93
104874993--104875169	54	3.3	54	81	3	151	27	20	13	38	1.90
104875128--104876041	452	2.0	444	82	4	1093	30	16	17	35	1.92
104876650--104876771	54	2.3	54	83	0	154	28	22	12	36	1.90
104876994--104877107	54	2.1	54	80	3	131	26	21	14	37	1.92
104877009--104877124	54	2.1	54	85	0	151	25	20	14	39	1.91
104877411--104877571	54	3.0	54	74	5	171	31	21	11	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438