genome.fa.s3.2.7.7.80.10.50.1000.336.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  336  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105102168--105102370	90	2.3	91	82	6	261	33	14	28	23	1.94
105102729--105102799	35	2.0	36	97	2	135	38	11	14	36	1.81
105102721--105102811	19	4.9	19	90	8	152	38	9	15	36	1.81
105103101--105103134	18	1.9	17	88	5	50	29	0	0	70	0.87
105115828--105115990	81	2.0	81	97	0	308	48	16	8	26	1.75
105118827--105119002	47	3.7	46	75	11	160	28	18	28	24	1.98
105118777--105119003	95	2.4	95	81	8	264	27	18	29	24	1.98
105120524--105120673	42	3.5	42	84	2	185	29	25	19	26	1.98
105125344--105125403	23	2.6	23	94	0	111	13	28	33	25	1.93
105131997--105132051	24	2.3	24	90	3	85	32	10	20	36	1.87
105134365--105134448	26	3.2	26	96	0	150	33	4	25	36	1.77
105135891--105135965	26	2.8	26	87	2	96	34	21	12	32	1.90
105136068--105136205	54	2.5	55	88	2	190	19	25	21	34	1.96
105136068--105136202	27	5.0	28	85	7	163	20	25	21	33	1.97
105146575--105146604	2	15.0	2	100	0	60	50	0	0	50	1.00
105148642--105148673	13	2.3	15	89	10	50	37	9	34	18	1.83
105151346--105151487	26	5.6	25	71	18	82	57	2	7	32	1.42
105151194--105151608	52	8.1	50	71	13	215	59	3	6	30	1.39
105151379--105151544	76	2.2	74	83	2	197	61	3	6	28	1.38
105154292--105154379	23	3.9	23	73	16	78	23	23	17	35	1.95
105156301--105156422	44	2.8	42	80	12	133	24	16	26	32	1.96
105163262--105163313	26	2.0	26	100	0	104	23	15	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105172565--105172598	14	2.4	14	90	0	50	2	23	0	73	0.97
105177287--105177327	21	2.0	21	85	0	55	21	12	34	31	1.91
105182449--105182475	7	3.9	7	100	0	54	11	0	0	88	0.50
105187272--105187345	36	2.1	36	100	0	148	20	21	27	31	1.98
105188891--105189088	71	2.8	70	92	3	294	33	17	28	20	1.95
105188957--105189074	41	3.1	41	60	28	98	32	17	28	21	1.96
105188925--105189088	71	2.3	71	100	0	328	35	17	28	18	1.94
105195729--105195926	71	2.8	70	92	3	294	33	17	28	20	1.95
105195795--105195912	41	3.1	41	60	28	98	32	17	28	21	1.96
105195763--105195926	71	2.3	71	100	0	328	35	17	28	18	1.94
105203906--105204073	40	4.2	40	79	1	158	22	27	23	26	2.00
105203922--105204071	80	1.9	80	84	5	205	21	27	24	26	1.99
105210830--105210993	71	2.3	71	96	0	301	34	17	28	18	1.94
105212673--105212711	20	1.9	21	84	5	53	2	17	12	66	1.35
105220838--105220912	26	2.9	26	91	0	132	33	5	25	36	1.79
105221427--105221479	26	2.0	26	85	7	72	37	22	11	28	1.89
105226893--105226998	26	4.2	26	91	3	171	33	6	23	36	1.81
105226893--105226998	51	2.1	51	92	3	178	33	6	23	36	1.81
105232236--105232276	21	2.0	21	90	0	64	36	19	0	43	1.51
105239205--105239308	41	2.6	39	80	11	106	32	24	15	27	1.95
105247041--105247544	205	2.5	205	87	0	695	31	17	21	29	1.96
105247618--105247707	45	2.0	44	85	6	119	31	10	31	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105249464--105249514	9	5.9	9	76	15	54	39	1	0	58	1.09
105249464--105249514	15	3.5	15	73	10	52	39	1	0	58	1.09
105249467--105249610	23	6.3	23	71	16	95	34	4	3	57	1.37
105249493--105249601	44	2.4	44	77	14	105	33	4	3	57	1.37
105251470--105251515	23	2.0	23	100	0	92	56	17	8	17	1.65
105253492--105253524	18	1.9	17	88	11	50	0	33	0	66	0.92
105254321--105254418	22	4.4	21	77	14	83	30	5	5	59	1.41
105254384--105254488	24	4.1	26	70	22	71	30	9	4	55	1.53
105254422--105254489	25	2.7	26	79	2	75	33	10	5	50	1.61
105254691--105254779	3	29.7	3	100	0	178	33	0	0	66	0.92
105254792--105254816	10	2.5	10	100	0	50	40	0	8	52	1.31
105255252--105255278	2	13.5	2	100	0	54	48	0	0	51	1.00
105260509--105260624	43	2.7	44	90	5	175	45	15	24	14	1.83
105261542--105261577	14	2.6	14	95	0	63	27	13	2	55	1.52
105261465--105262242	89	8.9	88	74	15	538	28	17	19	35	1.94
105261575--105261728	77	2.0	77	84	2	202	29	18	19	32	1.96
105261408--105262154	166	4.4	166	79	11	696	28	16	19	35	1.94
105261823--105262168	171	2.0	166	85	5	462	28	15	19	36	1.92
105261741--105262216	260	1.8	255	84	6	654	29	16	19	34	1.94
105261478--105262216	349	2.1	344	83	7	899	28	17	19	35	1.94
105261994--105262244	90	2.8	89	82	7	296	28	16	18	36	1.93
105264089--105264137	12	4.1	12	78	0	53	32	4	2	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105264426--105264490	22	3.0	21	76	17	69	33	3	6	56	1.39
105264489--105264541	26	1.9	29	85	11	76	26	11	3	58	1.49
105264529--105264596	25	2.7	26	79	2	75	33	10	5	50	1.61
105264794--105264837	3	14.7	3	95	0	79	34	0	0	65	0.93
105264851--105264875	10	2.5	10	100	0	50	40	0	8	52	1.31
105265310--105265348	2	19.5	2	100	0	78	48	0	0	51	1.00
105272089--105272124	2	18.0	2	100	0	72	50	0	0	50	1.00
105276129--105276212	25	3.4	25	86	6	118	26	23	21	28	1.99
105276278--105276329	11	5.1	11	75	15	58	38	19	7	34	1.80
105276262--105276329	20	3.4	20	89	4	84	36	19	8	35	1.83
105284134--105284243	26	4.3	26	89	4	156	28	23	20	28	1.99
105284134--105284243	51	2.2	49	87	8	150	28	23	20	28	1.99
105284297--105284349	20	2.8	20	86	11	67	32	18	9	39	1.83
105286551--105286649	28	3.5	28	81	9	112	29	25	16	29	1.96
105294232--105294330	28	3.5	28	81	9	112	29	25	16	29	1.96
105298236--105298304	34	2.0	34	97	0	129	30	7	31	30	1.84
105299826--105299881	26	2.1	27	93	3	96	42	1	19	35	1.62
105300220--105300279	28	2.1	30	93	6	106	38	20	13	28	1.90
105307416--105307518	29	3.6	29	88	2	136	27	33	13	26	1.94
105308700--105308745	22	2.1	22	100	0	92	30	21	0	47	1.51
105309541--105309683	65	2.2	65	82	0	169	24	17	23	34	1.96
105310916--105311223	46	6.5	48	78	12	241	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105312357--105312395	21	1.9	21	89	5	62	15	38	23	23	1.92
105312660--105312737	26	3.1	26	73	10	72	21	17	19	41	1.91
105314789--105314815	6	4.5	6	100	0	54	18	33	33	14	1.92
105320680--105320726	2	24.0	2	84	4	60	42	0	4	53	1.20
105330188--105330216	14	2.0	15	93	6	51	27	0	20	51	1.47
105330730--105330760	15	2.1	15	93	0	53	19	0	25	54	1.44
105331303--105331479	45	4.0	45	78	9	188	23	18	26	32	1.97
105333566--105333608	19	2.4	17	82	17	52	25	23	0	51	1.49
105337029--105337138	55	2.0	55	100	0	220	43	5	18	32	1.73
105340007--105340090	26	3.2	25	88	3	123	35	5	22	35	1.79
105345072--105345110	18	2.2	17	86	4	51	7	17	5	69	1.32
105346290--105346339	26	1.9	26	87	0	73	40	2	2	56	1.22
105359181--105359215	16	2.2	16	100	0	70	48	5	22	22	1.72
105359585--105359689	46	2.2	46	85	10	131	36	13	24	25	1.92
105360969--105361081	44	2.5	45	85	7	142	24	17	26	30	1.97
105362184--105362208	12	2.1	12	100	0	50	36	48	8	8	1.62
105362944--105362993	26	1.9	26	87	0	73	40	2	2	56	1.22
105368725--105368832	26	4.2	26	93	0	189	37	25	5	31	1.79
105369139--105369176	19	2.0	19	100	0	76	57	31	0	10	1.32
105370252--105370344	3	31.3	3	86	4	127	29	2	0	68	1.01
105370316--105370349	17	2.0	17	88	0	50	23	11	0	64	1.26
105370354--105370391	16	2.3	17	90	4	60	28	7	0	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105370460--105370490	15	2.1	15	100	0	62	32	6	0	61	1.21
105370563--105370600	15	2.5	15	86	0	58	34	5	0	60	1.19
105375249--105375287	21	1.9	21	89	5	62	43	5	7	43	1.55
105385106--105385292	71	2.7	68	93	5	281	18	28	18	34	1.95
105385129--105385292	71	2.3	71	100	0	328	18	28	17	35	1.94
105385129--105385326	71	2.8	70	92	3	276	20	28	17	33	1.95
105389464--105389650	71	2.7	68	93	5	281	18	28	18	34	1.95
105389487--105389650	71	2.3	71	100	0	328	18	28	17	35	1.94
105389487--105389684	71	2.8	70	92	3	276	20	28	17	33	1.95
105393822--105394008	71	2.7	68	93	5	281	18	28	18	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438