genome.fa.s3.2.7.7.80.10.50.1000.344.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  344  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107421582--107421624	15	2.9	15	86	10	61	53	0	6	39	1.28
107421583--107421629	14	3.2	14	85	8	58	57	0	4	38	1.18
107426822--107426864	22	2.0	22	100	0	86	9	37	11	41	1.74
107431775--107431886	46	2.5	45	85	5	138	29	24	12	33	1.92
107431810--107431907	46	2.1	46	98	0	187	25	22	14	37	1.92
107442141--107442322	83	2.2	83	97	0	346	18	26	14	40	1.89
107451582--107451712	57	2.3	56	85	4	163	25	21	6	46	1.74
107454145--107454189	16	2.9	16	87	6	58	57	22	11	8	1.60
107454476--107454505	15	2.0	15	93	0	51	13	16	40	30	1.87
107455576--107455609	18	1.9	18	88	5	52	47	8	14	29	1.75
107463024--107463147	43	2.9	43	90	1	187	22	32	20	24	1.98
107466780--107466963	40	4.6	40	82	4	174	25	21	26	26	2.00
107466780--107466999	80	2.8	79	82	5	241	25	21	26	26	2.00
107479231--107479317	40	2.2	40	85	4	113	32	28	17	21	1.96
107506816--107506866	8	6.4	8	88	0	75	41	1	0	56	1.10
107506810--107506858	13	3.9	13	80	20	59	40	0	0	59	0.98
107506819--107506869	16	3.2	16	94	2	86	43	1	0	54	1.11
107506816--107506874	24	2.5	24	86	5	75	42	3	0	54	1.17
107514220--107514290	25	3.0	24	76	14	83	7	22	2	67	1.28
107514275--107514307	13	2.4	14	90	5	50	12	9	3	75	1.14
107514319--107514358	8	5.1	8	90	3	64	40	0	0	60	0.97
107514313--107514355	13	3.1	13	81	18	59	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107514313--107514358	16	3.1	15	88	11	69	39	0	0	60	0.97
107515922--107515954	8	4.2	8	88	3	50	12	0	0	87	0.53
107519393--107519487	46	2.1	46	91	0	154	23	32	14	29	1.94
107526633--107526799	40	4.2	40	82	2	185	25	27	21	25	1.99
107526633--107526799	80	2.1	79	83	7	205	25	27	21	25	1.99
107527623--107527668	17	2.5	19	74	22	53	34	23	17	23	1.96
107534628--107534794	40	4.2	40	82	2	185	25	27	21	25	1.99
107534628--107534794	80	2.1	79	83	7	205	25	27	21	25	1.99
107535620--107535665	17	2.5	19	74	22	53	34	23	17	23	1.96
107539086--107539266	39	4.6	39	95	0	317	29	30	20	18	1.97
107539082--107539298	78	2.8	77	90	3	321	28	30	21	18	1.97
107540938--107540971	6	6.0	6	86	13	54	50	0	0	50	1.00
107544212--107544248	18	2.1	18	100	0	74	10	21	21	45	1.82
107547149--107547442	39	7.6	39	90	4	420	29	30	20	19	1.97
107547149--107547404	77	3.3	77	93	1	424	30	30	20	18	1.96
107547137--107547404	116	2.3	115	91	2	430	31	30	19	17	1.95
107550161--107550212	21	2.5	21	87	0	68	23	36	25	15	1.93
107555813--107555851	19	2.0	20	90	5	62	56	0	0	43	0.99
107557421--107557460	16	2.5	17	80	19	50	60	22	0	17	1.37
107560242--107560268	14	1.9	14	100	0	54	48	0	7	44	1.31
107560242--107560275	14	2.6	13	90	9	52	50	0	5	44	1.26
107562030--107562054	12	2.1	12	100	0	50	32	8	0	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107568292--107568335	18	2.3	20	78	21	51	65	18	4	11	1.40
107572649--107572701	27	2.0	27	84	0	70	32	24	5	37	1.79
107573782--107574027	123	2.0	123	99	0	483	28	8	18	44	1.78
107591806--107591979	87	2.0	87	100	0	348	36	12	12	37	1.82
107592047--107592088	21	2.0	21	95	0	75	16	11	14	57	1.66
107599593--107599649	29	2.0	28	83	10	71	43	14	26	15	1.85
107599854--107599999	42	3.5	42	79	5	134	29	13	26	31	1.93
107608046--107608253	40	5.2	39	84	1	218	25	25	22	25	2.00
107608046--107608251	80	2.6	81	84	3	247	25	26	22	25	2.00
107611050--107611269	46	4.8	44	74	14	151	25	28	18	28	1.98
107613251--107613288	19	2.0	19	85	10	51	21	26	28	23	1.99
107619230--107619408	40	4.4	40	82	3	198	26	22	25	25	2.00
107619230--107619408	80	2.2	81	85	3	236	26	22	25	25	2.00
107619264--107619434	80	2.1	80	81	2	191	28	23	24	23	2.00
107620240--107620290	25	2.0	25	100	0	102	33	19	11	35	1.88
107626700--107626795	48	2.0	48	85	0	129	32	12	20	34	1.90
107643198--107643267	27	2.5	28	95	2	124	28	14	27	30	1.95
107643198--107643279	27	3.0	27	85	8	78	29	15	24	30	1.96
107651003--107651072	27	2.5	28	95	2	124	28	14	27	30	1.95
107651003--107651084	27	3.0	27	85	8	78	29	15	24	30	1.96
107652998--107653061	28	2.3	28	88	0	92	20	17	35	26	1.94
107653378--107653555	54	3.3	53	84	1	194	39	21	8	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107653403--107653556	27	5.8	26	80	7	121	40	20	8	30	1.82
107653398--107653556	53	3.0	53	84	3	185	40	20	8	31	1.81
107653378--107653529	27	5.7	27	83	1	171	39	23	8	28	1.84
107653508--107653596	27	3.3	27	87	0	115	40	16	13	29	1.87
107653378--107653528	80	1.9	81	84	4	189	39	23	8	28	1.84
107653428--107653601	54	3.2	54	79	5	147	40	19	10	29	1.86
107656871--107656949	24	3.3	25	75	10	76	16	36	6	40	1.74
107667296--107667401	6	17.3	6	75	14	101	48	14	17	19	1.81
107667296--107667401	31	3.5	31	84	6	128	48	14	17	19	1.81
107667520--107667638	27	4.5	26	86	9	159	38	22	23	15	1.92
107667520--107667641	54	2.3	54	88	4	176	38	22	22	16	1.93
107667636--107667675	2	20.0	2	100	0	80	50	0	0	50	1.00
107667937--107668260	27	12.0	27	89	0	459	22	20	19	36	1.95
107668307--107668539	27	8.6	27	85	2	202	30	9	20	39	1.85
107668370--107668565	27	7.3	27	87	0	257	30	9	20	40	1.83
107668287--107668565	81	3.4	81	80	2	258	30	9	19	39	1.84
107670227--107670327	28	3.5	28	86	6	114	28	13	27	29	1.95
107670256--107670327	29	2.5	28	91	6	110	29	13	27	29	1.95
107678031--107678131	28	3.5	28	86	6	114	28	13	27	29	1.95
107678060--107678131	29	2.5	28	91	6	110	29	13	27	29	1.95
107684477--107684537	12	5.1	12	74	7	52	22	39	27	9	1.86
107685021--107685363	62	5.6	62	90	1	530	50	8	6	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107685021--107685363	122	2.8	123	92	1	564	50	8	6	34	1.58
107688333--107688383	14	3.5	14	81	13	59	0	31	1	66	1.03
107688337--107688378	9	4.4	9	82	17	50	0	33	0	66	0.92
107688336--107688375	18	2.2	18	90	0	62	0	32	0	67	0.91
107688582--107688639	3	19.3	3	100	0	116	34	0	0	65	0.93
107694945--107694970	12	2.2	12	100	0	52	30	7	7	53	1.57
107697273--107697372	40	2.6	38	80	3	119	13	13	38	36	1.83
107698139--107698176	17	2.2	18	90	9	62	28	13	13	44	1.81
107707074--107707248	26	6.6	25	85	8	215	34	6	22	37	1.79
107707084--107707248	52	3.1	52	88	6	249	34	6	23	36	1.79
107707084--107707229	56	2.7	55	92	5	244	34	5	23	36	1.78
107707094--107707248	82	1.9	82	91	0	256	33	6	23	36	1.80
107708732--107708784	26	2.0	26	82	7	63	37	20	15	26	1.92
107709032--107709317	136	2.1	137	96	0	520	24	18	25	32	1.97
107710289--107710340	26	2.0	26	100	0	104	42	15	15	26	1.87
107710727--107710751	10	2.5	10	100	0	50	36	0	0	64	0.94
107710893--107711101	41	5.1	40	78	6	120	36	22	18	22	1.95
107715129--107715168	21	2.0	20	85	5	53	12	7	17	62	1.52
107714995--107715246	133	1.9	133	98	0	486	19	9	18	51	1.73
107717177--107717216	21	1.9	21	94	0	71	30	10	12	47	1.74
107723360--107723404	21	2.1	21	100	0	90	24	17	57	0	1.40
107723702--107723896	42	4.5	44	71	11	134	25	20	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107726703--107726811	6	18.7	6	71	9	73	18	3	16	61	1.48
107726744--107726774	16	1.9	16	93	0	53	16	3	25	54	1.56
107726765--107726817	12	4.3	12	83	4	52	22	3	11	62	1.45
107727081--107727216	62	2.2	61	89	1	209	23	8	20	47	1.78
107727321--107727370	15	3.3	15	85	0	64	18	8	32	42	1.79
107729086--107729238	66	2.3	64	87	5	209	28	7	16	47	1.75
107729285--107729309	2	12.5	2	100	0	50	0	0	52	48	1.00
107729963--107730014	21	2.5	21	81	6	61	36	36	13	13	1.84
107730772--107730853	36	2.3	36	86	0	119	47	20	10	20	1.80
107731220--107731269	3	16.7	3	100	0	100	32	34	0	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438