genome.fa.s3.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  171  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52476010--52476160	80	1.9	79	83	6	198	23	27	22	25	2.00
52478092--52478160	27	2.5	28	85	2	104	24	11	30	33	1.91
52484956--52485015	31	1.9	31	83	6	77	48	11	1	38	1.50
52493461--52493547	37	2.3	36	94	5	147	26	33	19	20	1.97
52493616--52493915	49	6.1	49	96	0	537	30	27	8	33	1.87
52497388--52497818	40	10.8	40	93	0	657	27	24	19	28	1.99
52497388--52497818	199	2.2	200	92	0	729	27	24	19	28	1.99
52499701--52499787	37	2.3	36	94	5	147	26	33	19	20	1.97
52499856--52500400	49	11.1	49	97	0	1027	30	27	8	33	1.86
52507520--52507564	23	2.0	23	82	8	56	51	13	4	31	1.61
52515433--52515473	19	2.1	20	90	4	66	34	29	19	17	1.94
52522696--52522737	20	2.1	20	90	0	66	33	28	21	16	1.95
52537148--52537274	44	3.0	43	77	3	148	23	15	28	32	1.95
52539099--52539275	54	3.3	54	79	0	183	37	19	9	33	1.84
52539105--52539337	27	8.6	26	75	10	148	38	19	10	31	1.85
52539114--52539272	81	2.0	81	81	2	185	37	16	10	34	1.84
52539293--52539432	27	5.2	27	80	1	138	35	18	18	27	1.94
52540151--52540209	27	2.2	26	84	3	73	22	23	18	35	1.96
52546915--52547084	27	6.3	27	84	2	171	40	21	8	30	1.83
52547106--52547237	27	4.9	27	81	0	147	31	21	21	26	1.98
52547866--52547917	27	2.0	26	84	3	68	17	23	21	38	1.93
52547950--52548005	2	28.0	2	100	0	112	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52549619--52549667	14	3.8	12	77	17	53	2	28	0	69	1.00
52555580--52555733	81	1.9	81	98	0	299	22	30	18	29	1.97
52557062--52557135	28	2.5	31	85	12	102	29	25	13	31	1.94
52557062--52557135	31	2.5	29	87	10	98	29	25	13	31	1.94
52557614--52557639	2	13.0	2	100	0	52	50	0	0	50	1.00
52563581--52563741	81	2.0	81	98	0	313	24	29	17	28	1.97
52565071--52565144	28	2.5	31	85	12	102	29	25	13	31	1.94
52565071--52565144	31	2.5	29	87	10	98	29	25	13	31	1.94
52565623--52565650	2	14.0	2	100	0	56	50	0	0	50	1.00
52569145--52569364	40	5.5	40	83	0	242	25	15	26	33	1.95
52569145--52569364	120	1.8	119	83	2	271	25	15	26	33	1.95
52573125--52573180	28	2.0	29	85	3	78	14	19	44	21	1.86
52575086--52575181	32	3.0	32	100	0	192	31	21	21	25	1.98
52580473--52580528	28	2.0	29	82	3	69	16	21	41	21	1.90
52582817--52582976	43	3.7	44	74	14	120	32	25	19	23	1.97
52590403--52590561	43	3.7	42	83	13	200	29	25	20	24	1.99
52590403--52590562	86	1.9	85	85	8	227	30	25	20	24	1.99
52593788--52593936	43	3.5	42	79	2	174	36	22	10	31	1.87
52593797--52593908	42	2.6	42	81	5	127	37	19	9	33	1.85
52597264--52597308	17	2.6	18	80	16	51	48	2	0	48	1.13
52597541--52597571	6	5.2	6	92	0	53	16	80	0	3	0.83
52597541--52597580	18	2.2	18	86	0	53	20	75	0	5	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52599752--52599804	27	1.9	28	88	3	81	64	7	5	22	1.41
52601858--52601886	13	2.2	13	100	0	58	24	6	0	68	1.13
52603349--52603395	3	15.7	3	100	0	94	34	0	0	65	0.93
52603531--52603567	7	5.7	7	87	12	53	13	0	0	86	0.57
52612041--52612142	28	3.6	28	83	7	118	33	25	13	27	1.94
52613648--52613874	44	5.2	44	66	6	145	26	25	21	26	1.99
52613620--52614733	88	12.7	88	88	0	1573	27	23	21	27	1.99
52614802--52615349	44	11.9	45	74	13	346	30	19	23	26	1.98
52614806--52615360	140	4.0	140	87	1	774	30	20	23	26	1.98
52616048--52616085	16	2.6	15	88	12	53	2	15	2	78	0.97
52617023--52617053	16	1.9	16	93	0	53	9	3	0	87	0.66
52621738--52621791	25	2.2	24	81	15	58	72	0	18	9	1.11
52628004--52628115	56	2.0	56	94	0	197	32	16	23	27	1.96
52632421--52632525	53	2.0	53	82	0	129	38	18	25	18	1.93
52633020--52633275	85	3.0	85	98	0	494	46	5	21	25	1.73
52634654--52634693	21	2.0	20	95	5	71	22	30	35	12	1.91
52639082--52639196	46	2.5	45	85	1	149	20	20	13	46	1.82
52639176--52639292	45	2.6	45	79	4	128	21	17	14	47	1.83
52645308--52645375	16	4.3	15	77	17	57	29	8	16	45	1.77
52647607--52647636	14	2.1	15	93	6	53	66	0	0	33	0.92
52647621--52647676	26	2.2	26	83	0	67	58	5	1	33	1.31
52650182--52650284	29	3.6	28	81	5	116	21	16	33	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52652670--52653655	220	4.5	220	92	0	1506	27	21	18	33	1.96
52677771--52677940	48	3.5	47	81	3	196	28	24	17	29	1.97
52679677--52679737	30	2.0	30	96	0	113	31	4	18	45	1.70
52681128--52681374	123	2.0	123	93	0	424	29	15	17	37	1.91
52683013--52683074	31	2.0	32	90	3	99	37	3	8	51	1.48
52683643--52683673	2	15.5	2	100	0	62	51	0	0	48	1.00
52687593--52687645	3	17.7	3	100	0	106	32	0	0	67	0.91
52688725--52688749	2	12.5	2	100	0	50	52	0	48	0	1.00
52690911--52690944	15	2.3	15	94	0	59	17	8	32	41	1.80
52696573--52696743	93	1.8	93	91	0	279	28	28	21	22	1.99
52696566--52696740	46	3.8	45	76	13	185	28	28	21	22	1.99
52704516--52704699	40	4.6	39	75	6	138	26	23	27	22	2.00
52704556--52704744	80	2.4	81	77	4	186	23	24	29	22	1.99
52712632--52712815	40	4.6	39	75	6	138	26	23	27	22	2.00
52712672--52712860	80	2.4	81	77	4	186	23	24	29	22	1.99
52714431--52714539	55	2.0	55	82	7	132	38	16	16	28	1.90
52714914--52715074	39	4.1	39	76	8	132	26	20	27	25	1.99
52722052--52722218	40	4.2	40	79	6	169	26	22	26	24	2.00
52726491--52726722	79	2.9	80	87	1	353	27	21	27	23	1.99
52726491--52726722	40	5.9	40	89	2	344	27	21	27	23	1.99
52734061--52734149	22	4.0	22	81	5	99	24	23	20	31	1.98
52735057--52735081	13	1.9	13	100	0	50	24	24	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52740852--52740884	17	1.9	17	100	0	66	54	12	9	24	1.66
52744354--52744485	29	4.6	29	84	0	156	25	15	33	25	1.95
52751875--52751968	29	3.2	29	93	0	152	30	15	27	25	1.96
52757670--52757720	21	2.4	21	83	6	59	31	3	17	47	1.66
52762451--52762616	40	4.2	40	77	8	162	25	22	27	24	2.00
52764009--52764212	40	5.1	40	83	2	214	26	25	21	26	1.99
52772012--52772219	40	5.2	39	85	1	227	25	25	22	26	2.00
52772012--52772219	80	2.6	80	84	1	256	25	25	22	26	2.00
52782903--52783149	40	6.2	40	89	1	347	26	28	21	23	1.99
52784520--52784685	40	4.2	40	81	3	176	24	27	21	25	1.99
52784536--52784647	39	2.8	38	85	4	134	25	29	22	23	1.99
52784536--52784685	79	1.9	78	83	6	196	24	28	22	26	1.99
52785511--52785556	17	2.5	19	74	22	53	34	23	17	23	1.96
52792521--52792687	40	4.2	40	82	2	185	25	27	21	25	1.99
52792521--52792687	80	2.1	79	83	7	205	25	27	21	25	1.99
52793513--52793558	17	2.5	19	74	22	53	34	23	17	23	1.96
52807349--52807388	11	3.7	11	96	3	73	37	20	32	10	1.85
52808010--52808069	27	2.3	26	82	2	66	21	25	20	33	1.97
52816055--52816117	29	2.3	27	88	5	90	61	4	17	15	1.50
52818600--52818654	25	2.2	25	100	0	110	23	32	25	18	1.97
52821183--52821210	14	2.0	14	100	0	56	21	14	14	50	1.78
52821618--52821647	16	1.9	16	93	6	53	33	23	0	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52821844--52822085	50	4.8	50	73	9	206	31	25	16	26	1.96
52822057--52822114	28	2.1	28	93	0	98	27	24	20	27	1.99
52822057--52822100	14	3.0	16	78	21	60	25	25	22	27	2.00
52841659--52841701	21	2.0	21	95	0	77	37	16	4	41	1.69
52845504--52845633	39	3.3	39	90	0	197	29	19	27	23	1.98
52845501--52845669	78	2.2	77	82	3	196	28	19	26	25	1.99
52852138--52852200	24	2.6	24	92	0	108	36	23	19	20	1.95
52853944--52854045	28	3.5	29	81	6	109	28	27	14	29	1.95
52878799--52879032	96	2.4	97	84	7	291	23	29	20	26	1.99
52878806--52879082	48	5.8	48	77	7	222	24	29	19	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438