genome.fa.s3.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  157  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47692672--47692769	27	3.6	27	71	5	81	37	21	9	31	1.85
47692755--47692985	27	8.6	27	88	0	318	34	17	20	26	1.95
47695037--47695187	78	1.9	79	84	6	200	25	21	29	23	1.99
47695036--47695218	40	4.6	40	79	8	178	24	22	27	24	2.00
47697714--47697898	40	4.7	40	76	6	162	25	23	27	23	2.00
47697714--47697898	79	2.3	81	81	9	202	25	23	27	23	2.00
47700024--47700165	40	3.5	40	83	1	124	27	23	26	22	1.99
47700063--47700191	40	3.2	39	84	6	152	24	22	27	25	2.00
47716696--47716796	24	4.2	24	96	0	175	33	1	42	21	1.64
47716695--47716789	12	7.9	12	65	13	52	33	2	41	23	1.66
47717758--47717789	8	4.0	8	91	0	55	46	25	25	3	1.67
47718204--47718314	27	4.2	26	89	5	159	16	24	22	36	1.94
47718204--47718314	54	2.1	53	91	1	177	16	24	22	36	1.94
47723598--47723699	28	3.5	29	81	6	109	28	27	14	29	1.95
47727585--47727661	24	3.2	24	94	0	127	31	2	44	22	1.66
47729062--47729171	27	4.1	27	84	5	134	14	21	23	40	1.90
47735263--47735483	122	1.8	121	87	3	329	40	9	19	31	1.82
47742533--47742563	13	2.4	13	94	0	53	19	32	32	16	1.94
47745170--47745239	27	2.5	28	95	2	124	28	14	27	30	1.95
47745170--47745251	27	3.0	27	85	8	78	29	15	24	30	1.96
47751893--47752022	40	3.2	40	83	4	165	23	29	25	22	1.99
47759912--47760037	40	3.2	40	83	10	161	23	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47766883--47766931	17	2.8	18	74	22	50	24	18	22	34	1.96
47767754--47767919	40	4.2	39	79	8	160	25	21	27	25	1.99
47771149--47771220	29	2.6	27	87	10	101	29	29	13	27	1.95
47771149--47771227	27	2.9	27	81	9	88	30	27	13	27	1.95
47775387--47775508	46	2.6	46	82	7	140	22	27	19	29	1.98
47775731--47777121	691	2.0	691	98	0	2701	32	19	11	35	1.89
47778743--47778850	43	2.5	42	76	16	114	32	15	24	27	1.95
47780877--47780943	27	2.5	27	85	0	89	11	14	35	37	1.84
47783881--47784013	51	2.6	51	92	2	223	30	18	10	39	1.85
47788206--47788238	16	2.0	17	94	5	59	48	0	9	42	1.35
47791542--47791664	42	2.9	42	76	9	142	31	13	24	30	1.94
47804457--47804520	32	2.0	32	96	0	119	15	10	21	51	1.74
47805567--47805731	46	3.5	46	88	8	235	27	21	21	29	1.99
47805568--47805732	24	7.0	24	91	6	248	27	21	21	29	1.99
47805778--47805828	20	2.5	20	96	0	93	33	21	9	35	1.86
47813629--47813793	23	7.0	24	91	4	248	27	21	22	27	1.99
47813650--47813792	47	3.1	47	94	1	252	28	20	22	27	1.99
47813838--47813885	20	2.5	20	86	10	64	35	22	8	33	1.84
47816832--47816932	28	3.5	29	86	6	125	29	27	13	28	1.95
47817405--47817440	2	18.0	2	100	0	72	50	0	0	50	1.00
47818472--47818637	43	3.9	43	77	5	158	25	13	27	33	1.94
47818884--47818916	17	2.0	17	88	5	50	21	6	18	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47820521--47820649	40	3.2	40	76	13	140	24	26	24	24	2.00
47820536--47820687	40	3.8	40	80	5	146	22	26	24	26	2.00
47828122--47828150	6	4.8	6	100	0	58	86	0	0	13	0.58
47829753--47829816	31	2.1	31	87	0	92	23	23	14	39	1.91
47830013--47830132	50	2.4	47	83	9	150	29	22	22	25	1.99
47830025--47830132	25	4.4	25	84	10	125	29	22	21	26	1.99
47837182--47837241	31	1.9	31	93	0	102	25	21	16	36	1.94
47837450--47837532	25	3.4	24	85	11	107	33	21	16	27	1.95
47837449--47837557	50	2.2	48	80	11	123	30	21	19	29	1.97
47837605--47837651	20	2.3	20	92	7	78	34	19	10	36	1.86
47840521--47840545	13	1.9	13	100	0	50	16	40	28	16	1.89
47845127--47845159	2	16.5	2	100	0	66	48	0	0	51	1.00
47853403--47853553	40	3.8	40	86	3	189	22	25	29	23	1.99
47867857--47868094	49	4.8	50	83	4	311	26	18	26	28	1.98
47870829--47870867	15	2.5	15	91	4	60	15	12	15	56	1.68
47873617--47873862	49	4.9	50	84	2	325	25	18	27	28	1.98
47873722--47873805	28	3.2	28	65	25	83	23	16	29	29	1.96
47876164--47876190	14	1.9	14	100	0	54	22	7	11	59	1.56
47884655--47884837	39	4.6	39	87	0	240	24	22	30	22	1.99
47892083--47892265	39	4.6	39	87	0	240	24	22	30	22	1.99
47895188--47895250	25	2.5	24	80	7	72	74	1	17	6	1.10
47896415--47896479	29	2.2	29	94	0	112	30	16	27	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47903665--47903814	80	1.9	80	80	4	178	23	29	24	22	1.99
47903705--47903817	40	2.8	38	86	7	138	22	28	25	23	1.99
47906735--47906796	29	2.1	29	90	0	97	33	17	24	24	1.96
47912271--47912296	2	13.0	2	100	0	52	50	0	0	50	1.00
47915089--47915254	40	4.2	40	81	3	176	24	27	21	25	1.99
47915105--47915216	39	2.8	38	85	4	134	25	29	22	23	1.99
47915105--47915254	79	1.9	78	83	6	196	24	28	22	26	1.99
47916079--47916124	17	2.5	19	74	22	53	34	23	17	23	1.96
47922679--47922845	40	4.2	40	82	2	185	25	27	21	25	1.99
47922679--47922845	80	2.1	79	83	7	205	25	27	21	25	1.99
47923671--47923716	17	2.5	19	74	22	53	34	23	17	23	1.96
47926793--47926832	21	1.9	21	94	0	71	27	10	0	62	1.27
47934426--47934467	21	2.0	21	100	0	84	47	9	4	38	1.57
47934427--47934475	21	2.3	21	92	3	80	46	12	6	34	1.66
47935796--47935853	27	2.1	27	87	0	80	27	22	8	41	1.83
47935839--47935896	26	2.2	26	87	0	80	29	17	13	39	1.88
47935877--47936013	27	5.2	26	76	11	116	38	21	10	29	1.86
47935917--47936125	27	7.7	27	77	6	161	40	19	7	32	1.80
47935877--47936044	81	2.1	79	82	3	210	40	20	8	30	1.83
47936165--47936216	27	1.9	27	84	7	70	30	21	25	23	1.99
47937030--47937099	25	2.8	25	93	0	113	27	25	22	24	2.00
47937029--47937124	25	3.9	24	81	9	95	28	23	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47937030--47937124	50	1.9	50	80	8	113	28	24	23	24	2.00
47937319--47937401	31	2.7	31	94	3	143	28	15	26	28	1.96
47942926--47942982	24	2.5	21	77	11	60	47	19	3	29	1.66
47943727--47943853	42	3.0	44	78	10	136	33	25	14	27	1.94
47953640--47953806	40	4.2	40	81	2	176	24	27	22	25	2.00
47953656--47953806	80	1.9	79	83	6	198	23	27	22	25	2.00
47961332--47961498	40	4.2	39	77	8	158	23	27	22	26	1.99
47961348--47961498	80	1.9	79	83	6	198	23	27	22	25	2.00
47987827--47987940	42	2.7	43	77	8	108	25	25	21	28	1.99
47990295--47990461	40	4.2	40	80	2	167	23	26	21	27	1.99
48000238--48000363	23	5.5	23	82	3	155	31	26	18	23	1.97
48000237--48000374	69	2.0	69	94	0	240	31	24	19	23	1.98
48000254--48000364	23	4.8	23	84	4	161	29	26	20	23	1.99
48005747--48005804	6	9.5	6	76	10	55	44	18	17	18	1.87
48005715--48005827	31	3.6	31	84	3	129	49	15	16	18	1.80
48005964--48006065	27	3.8	26	88	5	132	36	21	23	18	1.95
48006228--48006288	22	2.8	22	73	9	61	36	22	22	18	1.95
48006731--48007388	27	24.6	27	87	2	905	22	22	21	33	1.98
48007382--48007551	27	6.3	27	81	5	209	32	6	21	40	1.79
48007382--48007551	54	3.1	54	90	0	268	32	6	21	40	1.79
48013221--48013345	60	2.1	60	82	10	148	27	22	20	29	1.99
48013985--48014016	16	2.0	16	100	0	64	6	25	18	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48014812--48014843	5	6.2	5	92	7	55	78	0	21	0	0.76
48014788--48014843	15	3.6	16	78	7	71	71	0	25	3	1.02
48014791--48014843	25	2.1	26	82	10	65	71	0	24	3	1.02
48015868--48015911	19	2.4	18	85	7	54	40	9	0	50	1.34
48018078--48018147	24	2.9	24	97	0	131	32	12	20	34	1.90
48023494--48023589	40	2.4	41	83	11	119	27	16	30	26	1.97
48031666--48031880	49	4.4	49	93	0	367	29	9	31	28	1.89
48031982--48032102	37	3.3	37	95	2	217	25	19	33	21	1.97
48033914--48033998	40	2.1	40	84	0	107	27	21	28	23	1.99
48034196--48034417	29	7.7	29	96	1	401	26	16	32	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438