genome.fa.s3.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  158  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48037716--48038022	49	6.4	49	94	3	518	29	9	32	29	1.88
48037883--48037963	26	3.3	26	62	13	71	30	4	32	32	1.79
48037716--48038027	145	2.2	147	92	4	537	29	8	32	29	1.88
48038116--48038241	36	3.4	37	92	4	211	24	18	32	24	1.97
48040290--48040510	29	7.7	29	97	1	417	26	16	32	24	1.96
48043617--48043717	28	3.5	28	86	6	114	28	13	27	29	1.95
48043646--48043717	29	2.5	28	91	6	110	29	13	27	29	1.95
48051425--48051525	28	3.5	28	86	6	114	28	13	27	29	1.95
48051454--48051525	29	2.5	28	91	6	110	29	13	27	29	1.95
48056863--48056925	29	2.2	29	82	0	72	46	6	28	19	1.74
48063402--48063549	43	3.4	43	81	1	163	33	20	14	31	1.93
48066606--48066788	66	2.8	64	77	9	194	30	17	29	22	1.97
48071008--48071157	67	2.2	67	81	8	171	32	17	28	21	1.96
48071032--48071215	67	2.8	64	77	8	194	29	17	29	22	1.97
48075151--48075323	43	4.0	43	78	10	174	31	28	17	21	1.97
48077376--48077520	43	3.4	40	76	14	114	35	24	16	23	1.95
48088893--48088995	29	3.6	29	81	2	118	21	16	33	29	1.95
48091024--48091124	28	3.5	28	86	6	114	29	13	26	29	1.94
48098947--48099047	28	3.5	28	86	6	114	29	13	26	29	1.94
48110358--48110533	46	3.8	46	81	10	232	20	21	29	28	1.98
48110354--48110525	93	1.8	93	96	0	317	20	22	30	27	1.98
48113482--48113550	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48113473--48113560	30	3.0	30	81	8	99	10	17	15	56	1.66
48115944--48116119	46	3.8	46	81	10	232	20	21	29	28	1.98
48115940--48116111	93	1.8	93	96	0	317	20	22	30	27	1.98
48128730--48128786	19	2.8	20	79	12	64	15	0	28	56	1.40
48135751--48135924	79	2.2	80	94	3	307	21	21	28	28	1.99
48135747--48135924	40	4.5	40	92	2	297	20	21	29	28	1.98
48140664--48140718	28	2.0	28	100	0	110	18	7	25	49	1.73
48143687--48143865	40	4.5	40	93	1	297	21	22	29	27	1.99
48143690--48143888	40	5.0	40	90	4	246	22	21	28	28	1.99
48171709--48171879	93	1.8	93	94	0	306	28	28	21	22	1.99
48171704--48171876	46	3.7	46	77	13	201	28	27	21	22	1.99
48174984--48175200	40	5.4	40	93	2	341	23	22	28	26	1.99
48183048--48183338	40	7.4	40	90	4	409	24	21	28	26	1.99
48183048--48183338	79	3.7	79	88	5	414	24	21	28	26	1.99
48187986--48188017	15	2.0	17	88	11	50	25	0	31	43	1.55
48191197--48191241	3	15.0	3	100	0	90	66	0	0	33	0.92
48192652--48192694	2	21.5	2	100	0	86	48	0	0	51	1.00
48196601--48196642	21	2.0	21	86	9	59	0	26	0	73	0.83
48196853--48196939	3	29.3	3	69	21	51	62	4	2	31	1.28
48196873--48196939	19	3.5	19	76	13	57	64	4	2	28	1.28
48196873--48196939	21	3.1	22	73	14	59	64	4	2	28	1.28
48196876--48196938	27	2.3	28	78	10	76	65	4	3	26	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48200543--48200771	50	4.8	46	75	12	173	24	19	30	25	1.98
48203943--48203994	13	4.2	12	78	14	52	44	7	0	48	1.31
48204727--48204779	3	17.7	3	100	0	106	66	0	0	33	0.92
48210221--48210381	47	3.5	46	79	6	155	22	28	19	28	1.98
48210264--48210381	46	2.5	46	82	8	132	22	27	20	29	1.98
48210677--48210709	13	2.6	13	95	4	59	39	18	0	42	1.50
48217796--48217960	46	3.5	46	80	10	167	24	30	18	26	1.98
48221806--48221943	41	3.4	40	82	4	159	23	15	26	34	1.95
48229437--48229598	42	3.8	42	85	1	225	32	16	24	27	1.96
48229437--48229595	85	1.9	84	89	1	246	32	15	25	27	1.96
48230618--48230662	13	3.5	13	96	0	81	8	22	37	31	1.85
48233734--48233941	40	5.2	39	84	1	218	25	25	22	26	2.00
48233734--48233941	80	2.6	80	83	1	247	25	25	22	26	2.00
48246231--48246397	40	4.2	40	79	2	167	22	26	23	26	2.00
48246247--48246395	80	1.9	79	84	6	203	21	27	24	26	1.99
48248245--48248405	29	5.6	29	85	2	171	24	32	15	27	1.95
48256050--48256210	29	5.6	29	85	2	171	24	32	15	27	1.95
48258530--48258634	41	2.5	40	86	4	138	25	15	27	31	1.95
48259632--48259669	12	3.2	12	92	0	58	15	42	31	10	1.81
48262041--48262074	17	2.0	17	100	0	68	41	23	5	29	1.78
48268212--48268236	13	1.9	13	100	0	50	12	0	16	72	1.13
48268578--48268701	41	3.0	40	84	2	149	41	20	18	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48269140--48269191	7	7.4	7	79	16	54	15	0	30	53	1.42
48269140--48269212	14	5.1	14	73	17	60	15	2	32	49	1.58
48269140--48269292	21	7.5	21	71	17	90	16	3	34	45	1.63
48269176--48269230	23	2.5	21	80	11	65	14	7	30	47	1.71
48269237--48269293	7	8.1	7	84	11	73	14	1	42	42	1.55
48273676--48273749	29	2.6	29	93	0	130	28	14	31	25	1.95
48273733--48273808	29	2.6	29	82	0	98	23	19	34	22	1.97
48273676--48273808	58	2.3	58	81	2	142	26	17	32	24	1.97
48281810--48281940	29	4.6	29	83	2	131	25	17	32	24	1.97
48281810--48281881	28	2.5	28	95	2	126	27	15	30	26	1.96
48285485--48286255	159	4.7	163	85	7	1049	33	9	6	50	1.60
48285894--48285940	14	3.3	14	84	3	58	53	0	0	46	1.00
48285942--48286255	162	1.9	164	88	3	481	32	9	7	51	1.61
48286265--48286321	27	2.1	27	96	0	105	50	12	0	36	1.40
48286308--48286378	9	7.9	9	74	12	65	43	19	1	35	1.60
48286282--48286363	36	2.3	36	97	0	155	46	17	1	35	1.56
48290831--48290876	21	2.2	21	88	0	65	36	15	43	4	1.66
48291311--48291532	43	5.2	43	85	4	263	24	19	26	29	1.99
48291311--48291532	86	2.6	85	86	5	295	24	19	26	29	1.99
48295958--48296277	157	2.0	157	97	0	606	37	18	12	31	1.88
48312395--48312464	34	2.1	34	100	0	140	40	2	22	34	1.69
48316985--48317087	27	3.8	27	90	0	152	41	21	14	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48322266--48322431	24	7.0	24	91	4	257	27	21	22	28	1.99
48322266--48322432	71	2.3	71	92	3	273	27	21	22	28	1.99
48322266--48322431	47	3.5	48	90	4	257	27	21	22	28	1.99
48322489--48322545	9	5.9	9	73	15	51	35	21	8	35	1.84
48322477--48322547	20	3.5	20	94	0	124	32	21	11	35	1.89
48322482--48322536	11	5.4	11	70	16	55	30	20	12	36	1.90
48326017--48326155	43	3.2	43	87	2	190	27	15	23	34	1.94
48326438--48326572	68	2.0	68	97	0	252	28	6	19	45	1.75
48333443--48333539	27	3.5	27	84	5	106	29	16	23	29	1.96
48337051--48337188	42	3.2	43	76	14	124	26	15	24	33	1.95
48345787--48345837	20	2.5	20	96	0	93	35	9	21	33	1.86
48345882--48346048	24	7.0	24	90	4	241	28	22	21	27	1.99
48345882--48346048	47	3.5	47	88	6	239	28	22	21	27	1.99
48345882--48346048	71	2.3	71	92	3	273	28	22	21	27	1.99
48353842--48353892	20	2.5	20	96	0	93	35	9	21	33	1.86
48353935--48354100	24	7.0	24	91	4	241	28	22	21	27	1.99
48353937--48354079	46	3.1	47	92	4	236	29	21	20	27	1.98
48362717--48362883	40	4.2	40	81	2	176	24	27	22	25	2.00
48362733--48362883	80	1.9	79	83	6	198	23	27	22	25	2.00
48363709--48363754	17	2.5	19	74	22	53	34	23	17	23	1.96
48370718--48370884	40	4.2	40	82	2	185	25	27	21	25	1.99
48370718--48370884	80	2.1	79	83	7	205	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48371710--48371755	17	2.5	19	74	22	53	34	23	17	23	1.96
48378375--48378475	29	3.6	27	84	10	105	27	13	28	29	1.95
48384230--48384287	30	1.9	30	89	0	89	31	10	27	31	1.90
48384671--48384847	47	3.8	47	78	10	175	29	17	28	24	1.97
48384628--48384800	94	1.8	94	86	0	247	29	19	27	24	1.98
48391229--48391258	14	2.1	15	93	6	53	26	13	6	53	1.64
48393876--48394137	46	5.6	47	82	9	274	28	19	30	22	1.98
48393873--48394137	93	2.8	94	83	7	319	28	19	30	22	1.98
48401630--48401756	42	3.0	42	78	9	141	27	24	16	31	1.96
48401806--48402340	290	1.8	289	91	1	874	36	18	10	34	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438