Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  162  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49364819--49364857
19
2.1
19
100
0
78
48
15
15
20
1.81
49369254--49369353
40
2.5
40
81
0
119
25
13
24
38
1.91
49372375--49372552
40
4.5
40
87
3
236
24
26
23
24
2.00
49380355--49380572
40
5.5
40
86
3
280
25
28
22
23
1.99
49390490--49390584
40
2.4
40
84
7
113
25
15
26
32
1.96
49394613--49394724
27
4.1
27
84
8
138
37
23
23
16
1.93
49394613--49394724
55
2.1
54
86
5
154
37
23
23
16
1.93
49397421--49397471
26
2.0
26
84
7
68
17
7
29
45
1.77
49400143--49400325
92
2.0
92
95
0
330
20
29
21
28
1.98
49402030--49402066
17
2.2
17
100
0
74
32
16
0
51
1.45
49410343--49410457
29
4.0
29
81
7
128
26
29
13
30
1.94
49410345--49410457
58
2.0
57
85
5
156
26
29
13
30
1.94
49410521--49410564
19
2.4
18
85
7
54
22
38
18
20
1.93
49410529--49410566
19
2.1
19
90
5
60
18
36
15
28
1.92
49411951--49412004
8
6.9
7
91
8
54
14
0
27
57
1.38
49411951--49412004
16
3.4
15
87
10
72
14
0
27
57
1.38
49411953--49412007
24
2.2
24
90
3
83
12
0
29
58
1.35
49416971--49417140
49
3.5
49
98
0
322
32
10
27
28
1.90
49417118--49417293
48
3.7
48
91
0
289
34
6
26
31
1.83
49417118--49417291
96
1.8
96
96
0
321
33
6
27
32
1.83
49417333--49417460
37
3.4
37
97
1
238
23
18
32
25
1.97
49428625--49428654
11
2.7
11
94
0
51
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49436030--49436237
67
3.2
65
76
11
201
32
17
28
22
1.96
49439219--49439306
45
2.0
45
97
0
167
27
11
23
37
1.89
49441094--49441223
40
3.2
40
84
4
174
23
29
24
22
1.99
49444569--49444609
19
2.2
19
86
8
57
68
0
2
29
1.03
49445065--49445105
21
2.1
19
90
9
64
31
0
4
63
1.15
49466185--49466228
23
1.9
23
81
9
54
38
27
0
34
1.57
49470707--49470788
39
2.1
39
93
0
137
45
14
17
23
1.85
49472803--49472871
9
7.4
9
79
9
68
60
1
4
33
1.25
49472791--49472975
9
19.2
10
67
16
63
61
2
4
30
1.31
49472791--49472871
19
4.3
19
74
14
69
62
1
4
30
1.24
49473193--49473233
18
2.3
19
91
8
68
21
4
0
73
1.02
49473181--49473291
19
5.9
19
70
15
70
36
1
0
62
1.06
49473535--49473573
3
13.0
3
100
0
78
33
0
0
66
0.92
49474089--49474130
2
21.5
2
95
4
77
50
0
0
50
1.00
49479194--49479236
19
2.2
20
83
4
52
34
2
20
41
1.65
49479673--49479887
46
4.6
47
75
9
179
29
19
28
22
1.98
49479673--49479887
94
2.3
93
84
7
274
29
19
28
22
1.98
49479910--49480029
49
2.4
49
86
5
154
30
19
25
25
1.98
49489473--49489532
30
2.0
30
93
0
102
28
5
11
55
1.57
49497203--49497250
24
2.0
24
100
0
96
37
16
4
41
1.68
49498153--49498198
18
2.6
17
82
6
56
63
0
0
36
0.95
49500892--49500919
10
2.8
10
100
0
56
39
21
10
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49502041--49502081
20
2.0
20
95
0
73
34
17
0
48
1.47
49507453--49507489
17
2.2
17
90
0
56
78
0
16
5
0.93
49508024--49508095
24
3.0
24
100
0
144
62
4
8
25
1.41
49508744--49508790
24
2.0
23
87
4
67
72
10
2
14
1.21
49511953--49512081
30
4.3
30
78
9
93
42
7
10
38
1.69
49512089--49512115
14
1.9
14
100
0
54
85
0
7
7
0.75
49512826--49512850
11
2.3
11
100
0
50
40
8
0
52
1.31
49515603--49515642
18
2.3
18
87
8
57
12
15
0
72
1.12
49515626--49515679
26
2.1
26
100
0
108
20
7
7
64
1.43
49516149--49516183
2
17.5
2
100
0
70
51
0
0
48
1.00
49520012--49520036
5
5.0
5
100
0
50
20
40
20
20
1.92
49524947--49524988
2
21.0
2
100
0
84
50
0
0
50
1.00
49525630--49525686
30
2.0
28
82
6
69
54
1
21
22
1.54
49526223--49526310
45
2.0
45
97
0
167
37
5
14
42
1.70
49526873--49526917
23
2.0
23
95
0
81
11
20
26
42
1.85
49534380--49534424
23
2.0
23
90
0
72
15
22
22
40
1.91
49535657--49535684
13
2.2
13
100
0
56
64
0
14
21
1.29
49540279--49540546
48
5.6
48
77
7
251
29
17
29
23
1.97
49540279--49540539
96
2.7
96
81
4
305
29
18
28
23
1.97
49540279--49540546
144
1.9
144
80
3
315
29
17
29
23
1.97
49546352--49546531
79
2.3
80
80
7
206
22
27
25
25
2.00
49546349--49546531
40
4.6
40
78
6
176
23
26
24
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49557121--49557193
30
2.5
29
84
2
83
31
16
27
24
1.96
49560939--49561069
30
4.5
30
86
8
171
32
13
25
28
1.94
49560939--49561069
58
2.2
58
86
4
174
32
13
25
28
1.94
49568889--49569019
30
4.5
30
86
8
171
32
13
25
28
1.94
49568889--49569019
58
2.2
58
86
4
174
32
13
25
28
1.94
49576084--49576184
28
3.5
30
82
6
118
29
14
26
28
1.95
49576113--49576188
29
2.7
28
76
13
75
30
14
26
28
1.95
49581628--49581730
37
2.8
37
91
2
154
25
31
18
25
1.98
49581871--49582151
48
5.9
48
96
0
517
31
27
6
34
1.81
49586038--49586081
18
2.4
19
88
3
63
45
4
2
47
1.35
49588406--49588436
15
2.1
15
93
0
53
38
3
6
51
1.44
49589845--49590164
48
6.7
48
75
7
247
28
18
28
24
1.98
49589842--49590165
96
3.4
96
80
7
347
28
18
28
24
1.98
49589832--49590162
144
2.3
144
84
3
400
28
17
28
25
1.98
49591817--49591871
22
2.5
22
82
2
67
18
32
30
18
1.95
49592034--49592063
12
2.5
12
94
0
51
3
40
23
33
1.71
49600180--49600239
30
2.0
30
100
0
120
33
26
10
30
1.89
49604248--49604278
15
2.1
14
94
5
53
0
9
0
90
0.46
49607840--49608054
46
4.6
47
79
8
206
22
27
20
29
1.98
49607840--49608054
94
2.3
93
85
4
281
22
27
20
29
1.98
49615566--49615781
46
4.7
45
79
7
227
23
27
18
30
1.98
49615542--49615781
94
2.6
92
84
7
288
24
26
19
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49632052--49632120
28
2.5
28
95
2
122
18
10
27
43
1.82
49633749--49633786
20
1.9
20
88
0
58
52
10
2
34
1.50
49640053--49640121
28
2.5
28
95
2
122
18
10
27
43
1.82
49641827--49641898
27
2.8
25
85
4
72
29
22
26
22
1.99
49643286--49643462
83
2.1
83
94
1
311
32
20
11
35
1.88
49645337--49645379
11
3.7
11
79
11
50
34
0
4
60
1.17
49648261--49648414
27
5.7
27
84
3
195
28
9
22
39
1.85
49648262--49648414
81
1.9
81
86
5
220
28
9
21
39
1.85
49655967--49656023
29
2.0
27
83
6
69
29
12
29
28
1.93
49660373--49660526
40
3.8
40
81
1
166
25
25
21
26
1.99
49660373--49660526
80
1.9
80
81
2
184
25
25
21
26
1.99
49666268--49666450
39
4.6
39
77
6
145
22
24
30
23
1.99
49666273--49666455
79
2.3
79
80
5
183
20
24
31
24
1.98
49670973--49671126
40
3.8
40
81
1
166
25
25
21
26
1.99
49670973--49671126
80
1.9
80
81
2
184
25
25
21
26
1.99
49673708--49673764
26
2.2
25
87
12
80
31
14
8
45
1.75
49675967--49686351
633
16.4
633
91
0
16590
29
21
16
32
1.95
49686015--49686687
336
2.0
337
92
0
1114
29
22
15
32
1.95
49686352--49693005
633
10.5
633
92
0
10965
29
22
16
32
1.95
49692669--49693342
337
2.0
337
92
0
1125
28
22
15
33
1.95
49693006--49697772
633
7.5
633
91
0
7629
29
21
16
32
1.95
49697436--49698109
337
2.0
337
92
0
1125
28
22
15
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49696806--49698742
970
2.0
970
94
0
3356
29
22
16
32
1.95
49697773--49700637
633
4.5
633
91
0
4626
29
21
16
32
1.95
49700312--49700974
337
2.0
337
91
2
1073
29
22
15
32
1.95
49700642--49706667
633
9.5
633
92
0
9831
29
22
16
32
1.95
49706332--49707003
336
2.0
336
92
1
1123
29
22
15
32
1.95
49706668--49710790
633
6.5
633
92
0
6863
29
22
16
32
1.95
49710454--49711127
337
2.0
337
93
0
1143
29
22
15
32
1.95
49709822--49711758
970
2.0
969
94
0
3387
29
22
15
32
1.95
49710791--49716183
633
8.5
633
92
0
8856
29
22
16
32
1.95
49715848--49716519
336
2.0
336
92
1
1132
29
22
15
32
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438