Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  333  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104389940--104390129
58
3.3
58
77
4
179
24
33
16
26
1.96
104392043--104392101
22
2.8
21
71
2
55
22
1
8
67
1.26
104393771--104393821
26
1.9
27
84
4
68
41
0
5
52
1.25
104404699--104404731
17
1.9
17
93
0
57
48
3
18
30
1.63
104405048--104405244
97
2.0
96
82
6
238
45
2
2
49
1.29
104410809--104410847
2
19.5
2
100
0
78
48
0
0
51
1.00
104415153--104415212
29
2.1
28
81
3
66
60
8
0
31
1.27
104415161--104415213
19
2.8
19
80
8
63
60
3
0
35
1.15
104415202--104415253
12
3.9
12
73
22
50
69
1
0
28
0.99
104415161--104415289
10
13.1
10
73
16
74
61
3
0
34
1.17
104416780--104416818
21
1.9
21
89
5
62
53
0
10
35
1.35
104430018--104430051
2
17.0
2
100
0
68
50
0
0
50
1.00
104434824--104434858
18
1.9
18
94
0
61
25
40
28
5
1.78
104435338--104435364
2
13.5
2
100
0
54
48
0
0
51
1.00
104441771--104441850
41
1.9
43
82
10
103
56
11
3
28
1.52
104441828--104441862
18
1.9
18
94
0
61
74
5
0
20
1.02
104441828--104441919
25
3.8
25
68
12
66
66
9
2
21
1.32
104441946--104442016
22
3.2
22
84
9
74
71
1
1
25
1.02
104441980--104442064
21
3.7
23
78
10
68
60
1
0
38
1.05
104441970--104442037
22
3.0
23
85
8
86
66
1
0
32
1.01
104442163--104442204
14
3.1
14
76
13
52
61
4
0
33
1.17
104442157--104442211
26
2.1
27
86
3
76
61
3
1
32
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104442243--104442303
30
2.0
30
84
12
81
63
1
1
32
1.13
104442834--104442865
8
4.0
8
91
0
55
12
59
25
3
1.48
104443813--104444042
45
5.1
45
65
20
131
26
28
14
30
1.95
104443813--104444309
90
5.5
90
90
1
730
26
26
14
31
1.95
104443843--104444270
45
9.5
46
67
12
282
26
26
14
31
1.95
104456720--104456791
31
2.4
27
77
18
72
37
15
12
34
1.85
104456772--104456815
18
2.4
18
85
11
54
50
4
11
34
1.59
104456910--104456972
30
2.1
30
93
0
108
42
14
3
39
1.61
104458332--104458436
3
35.3
3
75
11
83
30
4
2
61
1.31
104458332--104458436
19
5.4
19
76
14
90
30
4
2
61
1.31
104466654--104466689
18
2.0
18
94
0
63
33
11
19
36
1.87
104468376--104468671
151
2.0
151
100
0
592
34
18
11
35
1.87
104471342--104471498
39
4.0
39
88
4
217
26
19
31
22
1.98
104471355--104471538
78
2.3
79
86
1
244
24
20
31
23
1.98
104471344--104471542
39
5.1
39
85
3
211
23
19
31
25
1.98
104471361--104471565
78
2.6
79
83
3
200
24
20
30
23
1.98
104472989--104473048
18
3.3
18
90
4
95
38
11
13
36
1.81
104473536--104473594
16
3.5
16
74
23
50
35
1
0
62
1.05
104476805--104476842
20
2.1
18
85
14
51
47
10
2
39
1.52
104478900--104479014
44
2.6
45
84
5
144
35
14
22
26
1.93
104482112--104482202
9
9.6
9
72
23
71
82
0
16
1
0.73
104482111--104482202
22
4.1
21
74
18
62
82
0
16
1
0.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104482122--104482202
42
2.0
41
83
11
87
82
0
16
1
0.73
104482110--104482202
6
15.8
6
75
19
74
82
0
16
1
0.72
104483115--104483296
44
4.1
44
74
8
181
29
16
25
28
1.97
104483405--104483996
83
7.1
83
94
0
990
32
18
20
27
1.96
104484768--104484867
17
5.8
17
89
3
155
38
11
15
36
1.82
104484763--104484874
52
2.1
54
87
8
169
38
9
16
35
1.81
104484771--104484867
35
2.8
35
95
1
178
38
11
14
36
1.82
104485351--104485409
16
3.5
16
74
23
50
35
3
0
61
1.13
104486886--104486927
2
21.0
2
100
0
84
50
0
0
50
1.00
104490950--104491009
28
2.1
28
100
0
120
40
6
13
40
1.71
104493377--104493594
118
1.8
118
86
1
312
39
6
5
47
1.54
104493606--104493642
17
2.2
17
90
9
58
37
5
0
56
1.22
104493375--104493631
118
2.2
116
80
8
286
40
6
5
47
1.53
104495987--104496137
43
3.5
43
82
6
198
30
23
15
30
1.96
104502081--104502113
17
1.9
17
93
0
57
39
0
18
42
1.50
104509592--104509662
19
3.7
19
81
9
74
33
0
5
60
1.20
104509592--104509663
20
3.7
21
79
7
64
33
0
5
61
1.19
104511989--104512096
26
4.2
26
93
0
189
32
7
24
36
1.83
104515178--104515213
16
2.2
16
100
0
72
36
25
13
25
1.93
104519609--104519660
22
2.4
22
93
0
86
15
36
19
28
1.92
104519609--104519676
22
3.1
22
83
6
77
17
32
20
29
1.96
104521827--104521875
16
3.1
15
85
8
62
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104521817--104521865
15
3.1
16
82
8
55
59
0
0
40
0.98
104540603--104540655
23
2.4
21
77
20
54
49
7
9
33
1.64
104540606--104540652
23
2.0
23
84
12
60
42
8
10
38
1.70
104541722--104541782
13
4.7
13
79
0
50
39
19
1
39
1.62
104550795--104550840
21
2.2
21
84
0
56
13
30
26
30
1.93
104553135--104553198
22
2.9
22
95
4
112
64
4
9
21
1.42
104553122--104553165
15
2.9
15
80
9
54
65
4
9
20
1.38
104553485--104553559
37
2.0
37
100
0
150
36
29
5
29
1.79
104559081--104559326
136
1.8
136
83
0
330
30
25
22
21
1.99
104562345--104562417
29
2.5
29
100
0
146
31
15
28
24
1.95
104562404--104562476
29
2.5
29
84
0
92
28
17
26
27
1.98
104570242--104570287
21
2.2
21
84
7
58
67
2
0
30
1.03
104570297--104570345
25
1.9
26
84
12
66
53
2
0
44
1.12
104570325--104570371
10
4.7
10
81
7
60
68
2
2
27
1.13
104570325--104570371
19
2.3
21
89
7
71
68
2
2
27
1.13
104582482--104582621
33
4.3
33
83
1
174
19
22
14
44
1.86
104582477--104582621
65
2.2
66
82
1
175
20
22
14
42
1.88
104584028--104584089
21
3.0
21
65
29
53
25
16
20
37
1.93
104583951--104584179
81
2.8
81
84
2
280
27
16
22
34
1.95
104583944--104584226
122
2.3
122
84
4
349
27
16
23
33
1.95
104583951--104584224
41
6.8
41
78
4
270
26
16
23
33
1.96
104588995--104589040
21
2.2
21
100
0
92
52
0
4
43
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104592624--104592657
17
1.9
17
88
5
50
79
0
0
20
0.73
104594257--104594293
18
2.1
18
94
0
65
64
0
5
29
1.15
104595986--104596035
24
2.1
24
92
0
82
30
14
10
46
1.77
104603482--104603557
30
2.5
30
93
0
134
13
27
36
22
1.91
104604313--104604413
13
7.8
13
78
3
96
44
2
17
34
1.64
104604333--104604411
39
2.1
38
87
2
113
40
3
20
35
1.70
104605344--104605538
38
5.0
37
84
5
201
31
25
21
21
1.98
104617508--104617534
2
13.5
2
100
0
54
48
0
0
51
1.00
104619282--104619313
10
3.3
10
95
4
57
62
0
6
31
1.20
104632455--104632726
108
2.5
110
78
8
279
36
16
22
25
1.94
104632735--104632899
59
2.8
59
85
0
213
24
21
22
31
1.98
104633683--104633722
2
20.0
2
100
0
80
50
0
0
50
1.00
104637414--104637457
14
3.0
14
81
12
52
38
0
0
61
0.96
104637419--104637459
16
2.5
17
84
11
59
34
0
0
65
0.93
104638009--104638130
10
12.7
9
70
17
68
57
2
0
39
1.18
104638035--104638071
19
1.9
19
94
0
65
59
2
0
37
1.12
104638015--104638134
40
3.0
40
74
20
108
56
2
0
40
1.18
104638462--104638486
13
1.9
13
100
0
50
48
0
12
40
1.40
104641595--104641624
13
2.2
14
94
5
53
23
36
3
36
1.71
104645316--104645553
50
4.8
50
90
3
354
26
18
31
22
1.97
104648235--104648259
12
2.1
12
100
0
50
32
16
8
44
1.76
104649433--104649466
17
2.0
17
88
0
50
58
8
0
32
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104657409--104657500
39
2.3
40
88
1
132
34
17
20
27
1.95
104658017--104658062
14
3.3
14
81
0
56
21
2
23
52
1.58
104658038--104658087
21
2.4
21
78
15
59
28
0
26
46
1.53
104658282--104658369
29
3.1
29
70
4
72
23
0
32
43
1.54
104658648--104658696
19
2.7
18
84
6
62
75
4
2
18
1.06
104659233--104659279
23
2.0
23
95
0
85
17
8
19
55
1.67
104663133--104663163
9
3.4
9
95
0
53
6
0
22
70
1.09
104668332--104668381
23
2.2
23
79
17
59
34
2
10
54
1.45
104668341--104668383
13
3.5
13
78
18
56
34
2
13
48
1.56
104668340--104668385
23
2.0
23
95
0
83
34
2
15
47
1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438