genome.fa.s3.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  113  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32842244--32842399	80	2.0	79	82	8	192	26	20	26	26	1.99
32847364--32847536	47	3.7	47	74	13	176	21	18	29	30	1.97
32847415--32847590	46	3.8	46	73	11	153	21	19	29	29	1.98
32847370--32847583	93	2.3	92	93	1	356	21	19	29	28	1.98
32851860--32851885	13	2.0	13	100	0	52	53	30	7	7	1.57
32855570--32855632	28	2.2	29	77	8	76	53	7	0	38	1.30
32855649--32855685	18	2.0	19	89	5	58	45	2	0	51	1.15
32861026--32861091	30	2.3	28	82	10	80	37	13	16	31	1.88
32861417--32861654	48	5.0	48	81	4	266	27	17	27	27	1.97
32861416--32861654	96	2.5	95	83	6	304	28	17	27	27	1.97
32863340--32863390	24	2.1	24	92	0	84	27	11	37	23	1.90
32873630--32873871	50	4.8	50	79	4	229	30	26	18	25	1.98
32876569--32876744	51	3.6	50	74	12	177	27	18	26	27	1.98
32876568--32876752	94	2.0	94	89	0	280	27	17	27	27	1.98
32883797--32883844	25	1.9	25	86	0	69	33	25	16	25	1.96
32883883--32883939	9	5.9	9	73	15	51	35	8	21	35	1.84
32883881--32883943	20	3.2	20	95	0	117	36	12	19	31	1.89
32883997--32884139	24	6.0	24	91	7	229	29	20	21	27	1.98
32883997--32884118	47	2.6	48	96	3	221	30	20	20	28	1.98
32883998--32884139	71	2.0	72	91	6	236	28	21	21	28	1.99
32884326--32884389	31	2.1	31	90	0	101	35	15	23	25	1.94
32891858--32891905	25	1.9	25	86	0	69	33	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32891944--32892000	9	5.9	9	73	15	51	35	8	21	35	1.84
32891942--32892004	20	3.2	20	95	0	117	36	12	19	31	1.89
32892058--32892201	24	6.0	24	90	8	222	29	20	21	27	1.98
32892394--32892457	31	2.1	31	90	0	101	35	15	23	25	1.94
32900736--32900795	29	2.0	30	83	3	77	38	6	25	30	1.81
32901461--32901711	67	3.8	64	77	9	206	29	16	29	24	1.97
32907100--32907203	51	2.0	51	94	0	181	25	33	24	16	1.96
32911642--32911744	29	3.6	27	81	5	98	29	33	16	21	1.95
32919669--32919771	29	3.6	27	81	5	98	29	33	16	21	1.95
32924524--32924712	39	4.8	40	80	9	158	24	29	22	24	1.99
32924524--32924713	79	2.4	78	82	6	206	24	28	22	24	1.99
32932485--32932702	79	2.8	80	80	8	232	25	27	22	24	2.00
32932511--32932702	40	4.8	39	79	8	190	24	28	22	23	1.99
32934690--32934818	56	2.3	58	85	5	165	26	31	15	26	1.96
32934732--32934818	29	3.0	29	100	0	174	27	27	13	31	1.94
32943193--32943261	28	2.5	28	93	4	115	27	14	27	30	1.95
32943193--32943273	28	3.0	27	84	10	69	28	16	24	30	1.96
32951107--32951175	28	2.5	28	93	4	115	27	14	27	30	1.95
32951107--32951187	28	3.0	27	84	10	69	28	16	24	30	1.96
32965571--32965615	21	2.2	20	84	4	54	40	0	17	42	1.50
32968224--32968341	31	3.5	35	88	9	126	22	23	17	36	1.95
32968247--32968341	31	3.1	31	96	0	172	23	22	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32968533--32968675	24	6.0	24	91	4	209	26	22	22	28	1.99
32968533--32968674	47	3.0	48	90	5	207	26	22	22	28	1.99
32968532--32968675	71	2.0	72	89	4	220	26	22	22	29	1.99
32968726--32968785	20	3.0	20	90	0	102	33	20	11	35	1.88
32968828--32968874	24	1.9	25	86	4	69	23	17	25	34	1.96
32970028--32970092	27	2.4	27	84	5	87	20	24	20	35	1.96
32970154--32970373	27	8.1	27	80	6	140	35	9	20	35	1.84
32970271--32971021	27	27.8	27	86	3	872	41	8	22	27	1.83
32971028--32971092	27	2.4	27	89	0	103	32	12	18	36	1.88
32971071--32971249	27	6.7	27	88	1	245	31	7	20	41	1.79
32970270--32971021	216	3.5	216	96	0	1371	41	8	22	27	1.83
32971017--32971228	81	2.6	81	83	5	241	31	8	20	39	1.82
32973948--32974065	31	3.5	35	89	9	135	22	23	16	37	1.94
32973971--32974065	31	3.1	31	98	0	181	23	22	15	38	1.92
32974257--32974399	24	6.0	24	91	4	209	26	22	22	28	1.99
32974257--32974398	47	3.0	48	90	5	207	26	22	22	28	1.99
32974256--32974399	71	2.0	72	89	4	220	26	22	22	29	1.99
32974450--32974509	20	3.0	20	90	0	102	33	20	11	35	1.88
32974552--32974599	25	1.9	25	86	0	69	25	16	25	33	1.96
32975758--32975821	27	2.4	27	81	5	76	21	25	17	35	1.95
32975875--32975930	27	2.1	26	83	9	69	39	12	10	37	1.78
32975883--32976534	27	23.8	27	80	8	156	35	8	21	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32975974--32976328	27	12.9	27	82	8	349	39	9	22	29	1.84
32976192--32976320	63	2.0	63	89	5	199	41	10	18	29	1.83
32976378--32976529	27	5.7	27	86	5	184	30	7	20	41	1.79
32976323--32976529	81	2.6	81	80	5	206	30	8	21	40	1.82
32979348--32979497	67	2.2	67	81	8	171	32	17	28	21	1.96
32979372--32979555	67	2.8	64	77	8	194	29	17	29	22	1.97
32980639--32980663	2	12.5	2	100	0	50	48	0	0	52	1.00
32992158--32992228	31	2.4	31	90	4	101	9	21	14	54	1.68
32992170--32992232	31	2.0	31	100	0	126	9	22	12	55	1.65
33000380--33000450	31	2.4	31	90	4	101	9	21	14	54	1.68
33000392--33000454	31	2.0	31	100	0	126	9	22	12	55	1.65
33008573--33008643	31	2.4	31	90	4	101	9	21	14	54	1.68
33008585--33008647	31	2.0	31	100	0	126	9	22	12	55	1.65
33017845--33018113	46	5.8	45	75	13	242	21	19	28	29	1.98
33017891--33018059	47	3.6	47	76	10	202	21	18	29	29	1.97
33017842--33018105	93	2.8	93	90	0	429	21	20	29	28	1.98
33021367--33021497	29	4.6	29	92	1	210	25	32	15	26	1.95
33021338--33021495	86	1.8	86	84	0	217	25	32	15	25	1.96
33021338--33021497	57	2.8	58	86	1	214	25	33	15	25	1.95
33029404--33029535	29	4.6	29	92	0	210	25	31	15	27	1.95
33029375--33029535	58	2.8	58	86	0	178	25	32	15	26	1.95
33033661--33033691	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33034522--33034633	43	2.6	43	85	2	145	35	22	14	27	1.93
33038863--33038921	31	1.9	31	96	0	109	16	28	8	45	1.77
33042816--33042965	40	3.8	40	75	15	132	26	24	27	22	2.00
33042853--33042981	40	3.2	40	79	3	145	24	23	27	24	2.00
33046833--33046871	20	1.9	21	85	15	55	43	17	5	33	1.72
33047695--33047860	43	3.9	43	83	2	192	31	25	15	27	1.95
33049004--33049082	31	2.5	31	93	4	133	26	26	18	27	1.98
33049110--33049197	42	2.1	42	89	0	131	37	19	12	30	1.89
33049342--33049516	26	6.8	26	91	0	273	27	22	23	26	1.99
33049342--33049516	52	3.4	52	94	1	309	27	22	23	26	1.99
33050322--33050408	27	3.2	27	88	0	120	19	22	20	36	1.95
33050550--33050784	81	2.9	80	88	3	346	28	8	21	41	1.82
33050441--33050784	27	12.7	27	76	5	246	29	9	20	40	1.84
33050524--33050920	27	14.7	27	81	6	236	31	8	21	37	1.84
33052801--33052976	46	3.8	46	81	10	232	20	21	29	28	1.98
33052797--33052968	93	1.8	93	96	0	317	20	22	30	27	1.98
33055061--33055096	18	2.0	18	100	0	72	55	22	5	16	1.62
33054995--33055142	72	2.1	72	93	2	253	47	22	10	18	1.80
33056555--33056613	25	2.4	24	78	10	66	27	23	20	28	1.99
33056859--33057175	27	11.8	27	87	0	384	31	8	19	40	1.82
33057177--33057539	27	13.5	27	86	4	432	41	7	21	29	1.82
33057166--33057539	54	6.9	54	87	2	502	40	8	21	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33056889--33057578	81	8.5	81	83	2	379	35	8	20	34	1.83
33057113--33057553	27	16.4	27	83	4	358	38	7	21	31	1.82
33059754--33059823	25	2.8	25	95	0	122	27	22	24	25	2.00
33060084--33060362	27	10.3	27	86	0	378	31	10	18	39	1.84
33060084--33060410	54	6.1	54	88	1	446	31	9	18	41	1.82
33060070--33060410	81	4.3	81	81	3	377	31	9	18	40	1.83
33060403--33060774	27	13.8	27	90	0	539	39	7	23	29	1.82
33066972--33067059	27	3.3	27	91	0	149	21	28	36	13	1.92
33070991--33071037	22	2.1	22	84	0	58	14	27	23	34	1.94
33074437--33074608	93	1.8	93	94	0	308	27	29	21	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438