genome.fa.s3.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  153  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46357457--46357559	29	3.6	27	81	5	98	29	33	16	21	1.95
46361920--46362049	40	3.2	40	82	4	165	23	28	25	23	1.99
46368508--46368610	29	3.6	27	81	5	98	29	33	16	21	1.95
46370018--46370085	27	2.5	26	79	6	73	33	22	20	23	1.97
46377444--46377617	27	6.4	27	83	5	199	38	20	17	23	1.93
46377444--46377616	54	3.2	54	90	1	258	38	20	17	23	1.93
46377445--46377617	81	2.1	81	88	0	247	38	20	17	23	1.93
46384970--46385058	43	2.0	44	97	2	171	48	4	17	29	1.67
46399038--46399211	40	4.1	40	81	15	213	15	17	28	39	1.90
46399075--46399176	51	2.0	51	96	0	186	13	17	25	43	1.86
46399046--46399211	91	1.8	91	96	0	305	15	16	29	38	1.89
46399137--46399224	40	2.2	40	87	2	122	17	17	30	35	1.92
46399297--46399380	43	2.0	42	85	2	114	11	22	29	35	1.90
46402220--46402393	46	3.8	46	77	13	185	20	21	29	28	1.98
46402215--46402386	93	1.8	93	92	0	290	20	21	29	28	1.98
46404281--46404410	40	3.2	40	75	13	133	24	27	24	23	2.00
46404297--46404447	40	3.8	40	79	6	146	22	27	23	25	2.00
46412297--46412447	40	3.8	39	84	2	151	23	27	23	26	2.00
46412297--46412447	80	1.9	79	83	6	198	23	27	23	26	2.00
46415352--46415480	40	3.2	40	76	14	133	24	27	24	24	2.00
46415368--46415516	40	3.8	40	79	9	130	22	26	23	26	2.00
46424097--46424268	46	3.7	46	76	13	181	21	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46424090--46424261	93	1.8	93	92	0	290	22	21	28	27	1.99
46426638--46426746	54	2.0	54	98	0	209	48	11	26	12	1.76
46434239--46434411	46	3.7	46	77	10	181	21	20	29	28	1.98
46434233--46434403	93	1.8	93	91	0	279	21	21	29	28	1.98
46443809--46443942	48	2.8	48	83	4	153	27	28	20	23	1.99
46448917--46449046	40	3.2	40	79	2	154	23	24	28	23	2.00
46455411--46455670	46	5.7	46	90	0	414	18	23	15	42	1.89
46457796--46457820	8	3.1	8	100	0	50	76	0	0	24	0.80
46457819--46457856	19	2.0	20	89	5	60	47	7	0	44	1.32
46459673--46459853	49	3.7	49	80	3	220	28	27	18	25	1.98
46459673--46459858	100	1.9	99	93	1	318	27	26	19	25	1.99
46462746--46462910	41	4.0	41	86	6	219	36	19	26	18	1.94
46462827--46462889	20	3.1	20	65	13	56	41	20	23	14	1.89
46465441--46465469	10	2.9	10	100	0	58	31	0	10	58	1.31
46465968--46466012	22	2.0	22	95	0	81	44	22	20	13	1.85
46467365--46467405	21	2.0	21	85	0	55	48	14	4	31	1.65
46468216--46468323	43	2.5	43	90	1	173	37	25	12	24	1.90
46476127--46476161	18	1.9	18	100	0	70	25	17	17	40	1.90
46480560--46480593	17	1.9	18	94	5	61	20	35	0	44	1.52
46483940--46483992	22	2.6	19	77	14	52	35	1	16	45	1.59
46484120--46484242	60	2.0	60	100	0	246	39	11	15	34	1.83
46484245--46484296	22	2.4	22	100	0	104	44	7	9	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46484457--46484597	57	2.5	57	91	2	239	29	17	22	31	1.96
46493988--46494026	21	1.9	21	89	5	62	23	28	20	28	1.99
46505720--46505834	55	2.1	56	81	14	132	35	20	23	20	1.96
46505745--46505834	27	3.2	28	78	13	105	33	22	23	21	1.97
46505940--46506028	28	3.2	28	91	0	142	32	8	25	32	1.87
46512077--46512229	39	3.9	39	89	0	216	24	30	20	24	1.99
46512046--46512228	78	2.3	79	88	1	269	24	29	21	24	1.99
46519692--46519844	39	3.9	39	90	0	225	24	30	20	24	1.99
46519661--46519843	78	2.3	79	90	1	278	23	29	22	24	1.99
46524491--46524605	55	2.1	56	83	8	146	34	21	24	19	1.96
46524516--46524605	27	3.2	27	85	7	119	32	23	24	20	1.98
46524714--46524798	27	3.1	27	93	3	143	31	8	25	34	1.86
46524711--46524802	28	3.3	28	93	3	159	31	7	26	34	1.84
46525049--46525080	8	4.0	8	91	0	55	3	25	25	46	1.67
46532370--46532484	55	2.1	56	83	8	146	34	21	24	19	1.96
46532395--46532484	27	3.2	27	85	7	119	32	23	24	20	1.98
46532589--46532680	28	3.3	28	90	3	141	31	7	26	34	1.84
46534946--46535073	46	2.8	46	89	0	184	21	21	27	30	1.98
46539952--46540136	40	4.6	40	93	1	300	23	22	27	26	2.00
46539948--46540167	80	2.8	78	86	6	289	26	21	25	26	2.00
46540396--46540440	22	2.0	21	84	16	56	33	17	13	35	1.89
46546973--46547157	40	4.6	40	93	1	309	23	22	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46546969--46547189	80	2.8	79	87	4	320	25	21	26	26	1.99
46547416--46547459	22	2.0	21	83	16	54	31	18	13	36	1.90
46557873--46557984	40	2.9	39	89	6	174	25	25	21	27	1.99
46565887--46566068	40	4.5	40	86	3	199	26	26	21	24	1.99
46565928--46566068	40	3.5	40	92	0	219	26	26	21	24	2.00
46572536--46572561	7	3.7	7	100	0	52	73	0	0	26	0.84
46576936--46577002	33	2.0	33	100	0	134	35	16	14	32	1.90
46581499--46581541	16	2.7	15	82	10	50	48	6	16	27	1.71
46584686--46584741	24	2.4	23	85	8	78	53	12	0	33	1.39
46586588--46586633	14	3.4	14	73	11	51	43	4	0	52	1.21
46586582--46586633	26	2.1	25	89	10	81	40	3	0	55	1.18
46589096--46589174	25	3.2	25	76	5	72	21	21	24	32	1.98
46591741--46591842	28	3.5	29	81	6	109	28	27	14	29	1.95
46599591--46599692	28	3.5	29	81	6	109	28	27	14	29	1.95
46620398--46620475	25	3.2	25	66	23	76	32	30	3	33	1.76
46620347--46620663	47	6.7	47	86	7	433	29	31	7	32	1.84
46620347--46620663	96	3.3	94	87	6	442	29	31	7	32	1.84
46624399--46624619	43	5.1	43	96	0	388	31	32	21	14	1.93
46624602--46624813	40	5.2	42	82	4	211	25	27	22	24	2.00
46626737--46627047	47	6.7	47	83	8	393	29	31	7	32	1.85
46626788--46627047	49	5.6	44	86	8	281	30	30	6	32	1.83
46626788--46627047	91	2.8	92	87	9	370	30	30	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46626737--46627047	140	2.2	139	88	5	452	29	31	7	32	1.85
46635330--46635513	40	4.6	39	75	6	138	26	23	27	22	2.00
46635370--46635558	80	2.4	81	77	4	186	23	24	29	22	1.99
46638960--46639114	53	2.9	54	82	6	172	40	12	10	36	1.78
46638913--46639082	89	1.9	89	81	3	207	38	11	12	37	1.81
46638912--46639206	18	16.1	18	74	10	168	37	11	13	37	1.81
46642350--46642374	2	12.5	2	100	0	50	52	0	0	48	1.00
46642473--46642595	29	4.2	29	97	0	228	26	28	15	29	1.96
46642436--46642595	58	2.8	58	88	1	178	26	31	15	26	1.96
46642436--46642595	87	1.8	87	83	2	214	26	31	15	26	1.96
46650264--46650464	53	3.7	53	78	3	168	20	23	17	38	1.93
46652525--46652705	96	1.9	96	89	2	283	19	29	23	27	1.98
46653933--46654166	48	5.0	48	76	8	248	28	24	19	27	1.99
46658353--46658410	28	2.1	28	96	0	107	34	17	15	32	1.91
46661653--46661910	40	6.5	40	89	2	342	22	23	27	26	2.00
46661944--46662095	76	2.0	76	100	0	304	27	17	17	38	1.91
46666055--46666155	28	3.5	28	86	6	114	28	13	27	29	1.95
46666084--46666155	29	2.5	28	91	6	110	29	13	27	29	1.95
46672878--46673135	40	6.5	40	88	2	342	22	23	27	26	1.99
46694404--46694478	38	2.2	30	69	30	78	26	21	29	22	1.99
46694370--46694519	77	1.9	78	94	1	266	24	21	30	24	1.99
46694369--46694520	39	3.9	39	91	2	243	23	21	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46694376--46694556	39	4.6	40	87	2	154	22	22	31	23	1.98
46694376--46694589	77	2.7	77	83	5	207	24	22	30	22	1.99
46701854--46702006	39	3.9	39	92	0	252	23	20	32	23	1.98
46701855--46702037	39	4.6	39	89	0	249	23	22	31	22	1.99
46704995--46705147	39	3.9	39	92	0	252	23	20	32	23	1.98
46704996--46705177	39	4.6	39	89	0	247	23	21	31	23	1.98
46712470--46712622	39	3.9	39	92	0	243	24	20	31	23	1.98
46712471--46712653	39	4.6	39	88	0	240	24	22	30	22	1.99
46712480--46712691	78	2.7	78	83	5	212	24	21	30	23	1.99
46729340--46729437	30	3.3	30	72	4	90	27	26	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438