genome.fa.s3.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  142  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42481343--42481414	35	2.1	35	89	0	108	29	16	25	29	1.97
42483154--42483273	29	4.2	29	82	3	145	28	29	13	29	1.94
42486230--42486376	27	5.5	26	78	4	141	40	22	6	29	1.80
42486203--42486375	81	2.2	80	80	3	204	41	21	6	30	1.80
42486355--42486575	27	8.2	27	80	4	248	32	21	5	40	1.77
42486203--42486458	54	4.8	54	80	2	210	37	21	6	33	1.80
42486363--42486574	54	3.9	54	85	1	273	32	19	6	41	1.76
42486363--42486575	81	2.6	80	84	1	300	32	20	6	41	1.77
42487030--42487117	6	14.3	6	71	17	65	19	17	14	48	1.81
42487030--42487108	31	2.5	31	87	0	113	18	17	13	49	1.80
42489245--42489393	27	5.6	26	71	12	115	39	23	8	28	1.84
42489269--42489465	27	7.3	26	78	7	137	39	22	6	32	1.79
42489237--42489466	54	4.3	53	77	4	203	38	22	6	32	1.81
42489245--42489437	107	1.8	107	85	2	271	39	21	7	31	1.81
42489239--42489466	107	2.1	107	81	4	264	38	22	6	32	1.80
42489398--42489637	27	8.9	27	86	1	311	30	21	6	41	1.78
42489967--42490026	27	2.3	26	85	2	75	21	23	20	35	1.96
42490145--42490224	31	2.6	32	80	11	103	20	17	13	48	1.80
42490145--42490238	6	15.3	6	73	12	75	20	17	13	48	1.80
42491388--42491432	21	2.1	22	83	4	56	26	2	15	55	1.52
42492659--42492936	141	2.0	141	91	0	457	21	20	29	28	1.98
42495973--42496018	18	2.6	18	75	0	56	34	21	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42504568--42504739	43	4.0	42	75	11	145	34	23	17	24	1.96
42504568--42504727	86	1.9	85	82	8	200	33	24	18	24	1.97
42504896--42504921	2	13.0	2	100	0	52	50	0	0	50	1.00
42512652--42512767	39	3.0	39	93	0	187	24	21	27	26	1.99
42516931--42517085	43	3.6	42	78	4	132	32	24	17	25	1.97
42516931--42517086	44	3.6	43	73	10	140	32	24	17	25	1.97
42516931--42517111	43	4.2	44	74	9	117	32	24	17	25	1.96
42519789--42520179	47	8.3	47	94	0	647	32	9	29	27	1.88
42520297--42520379	37	2.2	37	93	0	139	24	21	32	21	1.98
42523857--42523944	45	2.0	45	90	0	140	38	23	13	23	1.91
42526347--42526662	47	6.7	48	68	16	171	26	18	30	24	1.98
42533061--42533085	13	1.9	13	100	0	50	16	4	16	64	1.44
42533790--42534103	47	6.6	48	73	13	197	27	17	29	25	1.98
42534366--42534402	19	1.9	19	100	0	74	27	21	10	40	1.86
42538657--42538804	45	3.3	45	78	7	124	16	20	28	33	1.95
42554854--42554988	29	4.7	29	84	3	146	24	31	14	29	1.95
42554858--42554989	58	2.3	58	82	0	165	24	31	15	29	1.95
42560356--42560529	39	4.5	38	80	10	122	26	22	26	24	2.00
42560394--42560503	39	2.9	37	88	10	152	24	22	28	24	2.00
42571033--42571181	39	3.8	38	80	7	156	26	23	26	22	2.00
42571071--42571181	40	2.8	38	85	8	134	24	23	28	23	1.99
42571031--42571222	78	2.4	78	80	5	190	25	22	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42576953--42577063	29	3.8	29	89	0	150	25	29	13	31	1.94
42581061--42581148	45	2.0	45	86	0	122	38	23	13	23	1.91
42586525--42586626	28	3.5	27	69	19	71	25	27	19	27	1.99
42586526--42586664	60	2.3	59	81	9	158	27	24	19	28	1.98
42586666--42586709	19	2.2	20	84	4	54	36	20	15	27	1.93
42586999--42587062	26	2.4	27	79	10	78	26	10	26	35	1.90
42588095--42588767	336	2.0	336	97	0	1283	27	29	18	24	1.98
42590593--42590625	13	2.6	13	90	4	50	48	12	0	39	1.40
42592205--42592385	40	4.5	40	75	5	145	22	26	23	27	1.99
42597867--42597905	19	2.1	19	95	0	69	33	23	15	28	1.95
42600159--42600342	40	4.6	40	80	6	180	22	27	23	26	2.00
42602873--42602975	29	3.6	28	81	5	116	21	16	33	29	1.95
42610667--42610769	29	3.6	28	81	5	116	21	16	33	29	1.95
42621648--42621707	25	2.4	25	83	10	70	26	28	20	25	1.99
42621684--42621756	24	2.9	25	81	6	85	26	21	24	27	2.00
42627695--42627738	18	2.3	18	84	7	61	15	4	4	75	1.14
42627746--42627776	6	5.3	6	92	7	55	32	0	0	67	0.91
42637248--42637325	26	3.0	26	98	0	147	37	7	7	47	1.61
42640831--42640991	40	4.1	40	79	3	155	25	21	26	26	2.00
42644792--42644842	23	2.1	24	92	7	86	23	15	23	37	1.93
42649009--42649119	40	2.8	40	84	0	141	23	24	27	24	2.00
42652449--42652520	30	2.4	30	100	0	144	23	25	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42657236--42657272	17	2.2	17	100	0	74	37	21	0	40	1.54
42658243--42658502	43	6.0	43	88	1	360	31	26	15	27	1.95
42658246--42658502	129	2.0	129	89	1	399	31	26	14	27	1.95
42660007--42660040	12	2.8	12	90	4	50	55	20	2	20	1.56
42667610--42667868	43	6.0	43	81	4	281	31	26	15	27	1.96
42667630--42667866	128	1.9	128	81	3	298	31	26	14	27	1.95
42683627--42683775	80	1.9	80	81	2	183	22	30	24	22	1.99
42683668--42683775	40	2.7	38	85	8	128	21	29	25	23	1.99
42688841--42688890	25	2.0	25	100	0	100	44	20	12	24	1.85
42692139--42692326	40	4.7	40	79	5	193	25	23	27	23	2.00
42692141--42692326	79	2.3	82	83	7	231	24	24	27	23	2.00
42692141--42692359	79	2.8	79	79	6	185	25	23	27	24	2.00
42700894--42701077	40	4.6	39	75	6	138	26	23	27	22	2.00
42700934--42701122	80	2.4	81	77	4	186	23	24	29	22	1.99
42703467--42703651	79	2.3	82	83	7	229	24	24	27	23	2.00
42703468--42703659	40	4.8	40	79	7	151	24	24	28	22	2.00
42703467--42703684	79	2.7	79	79	6	183	24	23	27	24	2.00
42709153--42709229	24	3.2	24	96	0	136	32	2	42	22	1.67
42710605--42710716	27	4.2	27	86	5	138	16	25	22	36	1.94
42710605--42710716	54	2.1	53	86	1	152	16	25	22	36	1.94
42712977--42713068	42	2.2	42	86	0	121	34	19	15	30	1.93
42713213--42713309	25	3.8	25	91	1	158	25	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42713213--42713309	51	1.9	51	95	4	178	25	24	24	24	2.00
42714113--42714184	26	2.7	27	91	2	92	22	23	22	31	1.98
42714113--42714213	27	3.8	26	86	3	121	20	21	22	34	1.97
42714257--42714477	27	8.1	27	79	6	158	31	9	19	39	1.83
42714347--42714486	54	2.6	54	82	7	176	29	7	22	40	1.81
42714234--42714471	81	2.9	80	73	10	205	30	9	20	39	1.84
42714330--42714551	54	4.1	54	79	4	169	32	7	22	37	1.82
42714428--42714607	81	2.2	81	79	0	207	34	6	23	35	1.81
42714465--42714594	27	4.8	27	91	0	188	38	6	23	30	1.81
42714339--42714605	27	9.9	27	80	6	139	33	7	22	35	1.83
42732555--42732655	51	2.0	51	84	3	132	25	27	22	23	2.00
42734953--42735052	44	2.3	42	86	8	139	25	22	23	30	1.99
42735023--42735114	43	2.2	42	84	5	114	25	16	22	35	1.94
42756940--42757004	28	2.4	27	97	2	121	32	24	12	30	1.92
42759090--42759273	67	2.8	64	75	11	178	28	17	30	22	1.97
42760355--42760396	2	21.0	2	95	0	75	47	0	2	50	1.14
42765859--42765894	15	2.4	15	100	0	72	16	19	47	16	1.83
42766350--42766395	20	2.3	20	81	3	58	26	17	28	28	1.98
42770077--42770122	20	2.3	20	81	3	58	26	17	28	28	1.98
42770112--42770251	60	2.3	60	85	8	178	28	19	25	26	1.99
42776663--42776720	30	1.9	30	83	13	75	24	27	25	22	2.00
42778522--42778724	31	6.5	31	88	5	277	31	24	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42778526--42778723	62	3.2	62	89	2	308	30	24	15	28	1.96
42778526--42778725	93	2.1	94	88	4	307	31	24	15	29	1.96
42778920--42779036	25	4.8	24	88	4	128	23	23	24	28	2.00
42778943--42779036	25	3.8	25	91	1	145	24	23	25	26	2.00
42779848--42779922	27	2.8	27	78	11	82	22	20	21	36	1.96
42779942--42780688	81	9.2	80	77	6	538	32	8	20	37	1.84
42779940--42780688	27	27.7	27	82	2	489	32	8	20	37	1.84
42782106--42782130	9	2.8	9	100	0	50	32	12	12	44	1.78
42790859--42790888	15	2.0	15	93	0	51	50	33	13	3	1.58
42793669--42793703	16	2.1	17	89	5	54	57	5	17	20	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438