Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  349  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108800386--108800835
119
3.8
119
91
0
684
30
18
16
34
1.93
108808845--108808892
14
3.5
14
83
11
55
41
10
25
22
1.85
108812985--108813034
12
3.9
13
71
12
50
60
0
6
34
1.21
108813086--108813134
20
2.5
20
83
9
66
59
0
4
36
1.17
108813211--108813260
19
2.7
19
84
6
68
68
2
4
26
1.18
108814917--108814959
20
2.2
20
83
8
52
58
6
0
34
1.25
108816277--108816335
27
2.2
27
78
3
66
33
10
13
42
1.78
108816345--108816408
32
2.0
32
84
6
85
35
4
14
45
1.65
108834127--108834160
2
17.0
2
87
0
50
50
2
2
44
1.32
108834800--108834873
29
2.6
29
89
4
105
25
16
32
25
1.96
108836630--108836734
27
3.9
27
81
9
117
35
20
23
20
1.96
108836838--108836912
28
2.8
27
82
6
82
30
12
21
36
1.90
108838362--108838443
26
3.2
26
94
0
146
35
24
7
32
1.83
108839110--108839144
17
2.1
17
100
0
70
34
0
11
54
1.37
108841821--108841861
6
6.5
6
89
10
64
80
2
0
17
0.82
108841824--108841862
20
2.0
20
94
0
69
79
2
0
17
0.84
108841882--108841940
27
2.2
27
81
0
64
28
11
18
40
1.86
108843544--108843774
116
2.0
116
99
0
453
24
12
10
52
1.70
108861898--108861936
14
2.9
14
88
7
55
51
0
0
48
1.00
108861903--108861962
19
3.4
18
80
10
72
41
1
0
56
1.09
108862449--108862493
22
2.0
23
82
4
56
2
22
31
44
1.65
108863783--108863813
4
7.8
4
92
0
53
25
25
0
48
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108865431--108865618
102
1.8
103
82
11
242
28
15
15
39
1.89
108865592--108865857
104
2.6
102
79
8
279
34
19
13
32
1.91
108866660--108866690
16
1.9
16
93
0
53
77
3
0
19
0.90
108866735--108867019
99
2.8
100
75
7
297
30
17
21
30
1.96
108866735--108867035
102
3.0
102
73
10
317
32
16
19
31
1.94
108872514--108872551
18
2.1
18
100
0
76
28
15
23
31
1.96
108882188--108882301
44
2.6
44
82
8
133
33
18
18
29
1.95
108882417--108882573
44
3.6
43
77
5
161
30
19
19
29
1.97
108887627--108887656
16
1.9
15
93
6
51
53
23
20
3
1.60
108888340--108888466
60
2.1
61
81
8
152
29
18
23
27
1.98
108889428--108889547
33
3.6
34
80
8
131
31
5
2
60
1.34
108889497--108889553
8
7.5
8
72
18
50
35
5
0
59
1.20
108890171--108890199
15
1.9
15
100
0
58
27
17
20
34
1.95
108891560--108891593
3
11.3
3
100
0
68
67
0
0
32
0.91
108897023--108897070
23
2.1
23
92
0
78
14
22
31
31
1.94
108899495--108899522
2
14.0
2
100
0
56
50
50
0
0
1.00
108899537--108899612
40
1.9
40
88
0
116
34
28
15
21
1.94
108906178--108906375
55
3.7
53
75
4
146
37
20
23
19
1.94
108906178--108906382
53
3.8
54
76
4
198
37
19
23
20
1.95
108906372--108906475
49
2.1
49
94
1
183
35
10
20
33
1.87
108914534--108914593
28
2.2
27
81
3
66
23
10
13
53
1.69
108915905--108915938
16
2.1
16
88
5
50
64
0
11
23
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108920359--108920506
55
2.7
54
76
9
158
18
21
18
41
1.91
108920359--108920493
53
2.5
52
79
10
146
19
20
20
40
1.92
108926553--108926714
77
2.1
75
79
4
173
24
21
19
34
1.96
108930345--108930474
48
2.7
49
79
7
158
30
21
26
22
1.99
108931753--108931794
22
2.0
22
95
4
77
14
45
23
16
1.84
108932846--108933000
28
5.6
28
81
6
154
38
11
23
25
1.89
108937134--108937179
18
2.5
18
78
21
51
45
0
0
54
0.99
108939776--108939844
28
2.5
28
90
6
106
17
8
28
44
1.78
108946305--108946334
12
2.5
12
88
0
51
33
16
10
40
1.82
108948155--108948201
19
2.5
19
96
0
85
25
10
27
36
1.89
108950033--108950118
31
2.9
31
85
11
101
32
13
23
30
1.93
108950033--108950106
31
2.5
31
87
10
102
31
13
25
29
1.94
108951437--108951597
81
2.0
81
98
0
313
28
17
29
24
1.97
108958044--108958129
31
2.9
31
85
11
101
32
13
23
30
1.93
108958044--108958117
31
2.5
31
87
10
102
31
13
25
29
1.94
108960077--108960115
16
2.4
16
91
4
60
17
5
7
69
1.32
108960798--108960823
13
2.0
13
100
0
52
76
0
23
0
0.78
108974645--108974676
2
16.0
2
93
0
55
50
3
0
46
1.17
108975307--108975409
29
3.6
29
82
5
102
28
17
28
26
1.98
108981177--108981261
31
2.7
31
90
0
134
27
10
20
42
1.84
108982760--108982807
20
2.5
20
86
3
62
64
2
6
27
1.28
108982802--108982864
27
2.3
26
78
10
72
50
12
0
36
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108982831--108982860
15
2.0
15
100
0
60
40
13
0
46
1.43
108986366--108986463
17
6.1
16
77
13
85
73
1
4
21
1.06
108986361--108986464
11
9.8
10
75
14
77
72
0
3
23
1.07
108986361--108986464
5
19.6
5
75
14
77
72
0
3
23
1.07
109002106--109002166
31
2.0
30
87
3
86
26
3
11
59
1.48
109006166--109006239
35
2.1
35
97
0
139
28
18
8
44
1.78
109008665--109008704
17
2.4
17
100
0
80
70
25
0
5
1.08
109011834--109011861
4
7.0
4
100
0
56
25
25
0
50
1.50
109020133--109021058
72
12.5
72
83
6
1059
32
16
18
32
1.93
109020133--109021058
151
6.3
146
84
6
1089
32
16
18
32
1.93
109020127--109021058
223
4.2
220
87
4
1327
32
16
18
32
1.93
109022466--109022534
28
2.5
28
95
2
122
18
10
27
43
1.82
109024130--109024167
20
1.9
20
88
0
58
52
10
2
34
1.50
109030373--109030443
28
2.6
28
86
2
99
21
11
25
42
1.86
109032075--109032112
20
1.9
20
88
0
58
52
10
2
34
1.50
109032827--109032878
23
2.3
23
93
0
95
11
25
53
9
1.67
109032812--109032883
23
2.7
28
69
24
73
9
26
52
11
1.67
109033475--109033510
15
2.3
15
90
9
54
33
0
8
58
1.28
109033493--109033614
23
5.1
23
67
20
72
32
7
4
55
1.46
109033723--109033752
2
15.0
2
92
0
51
46
0
3
50
1.18
109044290--109044338
20
2.5
20
86
0
71
38
12
8
40
1.72
109046991--109047044
16
3.4
16
86
0
72
37
1
25
35
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109047198--109047249
26
2.0
26
88
3
79
44
0
3
51
1.19
109056616--109056646
16
1.9
16
93
0
53
35
22
0
41
1.54
109056613--109056652
20
2.0
20
85
0
53
37
22
0
40
1.54
109056897--109057082
55
3.4
53
81
7
178
22
25
18
33
1.97
109059397--109059452
28
2.0
28
100
0
112
35
17
17
28
1.93
109060790--109060831
21
2.0
22
90
4
68
28
0
0
71
0.86
109060785--109060837
18
2.9
18
78
13
56
28
0
1
69
0.99
109062407--109062464
18
3.2
18
85
2
71
10
8
5
75
1.17
109068088--109068370
99
2.8
101
83
7
358
49
13
7
29
1.68
109069363--109069399
19
2.0
18
89
5
56
37
2
5
54
1.38
109071969--109074463
831
3.0
831
99
0
4900
34
9
20
34
1.86
109076335--109076368
17
2.0
17
100
0
68
41
17
17
23
1.90
109086224--109086265
20
2.1
20
100
0
84
42
0
23
33
1.55
109086373--109086429
27
2.1
27
100
0
114
22
10
24
42
1.85
109087180--109087255
11
6.8
11
68
24
52
42
1
2
53
1.23
109087326--109087395
24
2.8
24
78
4
77
45
2
4
47
1.37
109090626--109090661
18
2.0
18
89
10
56
22
5
16
55
1.62
109092643--109092846
51
4.0
51
95
0
354
30
25
13
30
1.93
109094737--109094843
26
4.2
26
91
2
180
31
7
24
36
1.83
109094737--109094843
51
2.1
52
94
1
189
31
7
24
36
1.83
109105232--109105275
22
2.0
22
86
0
61
38
2
2
56
1.24
109105339--109105373
17
2.0
17
88
5
52
40
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109105699--109105732
17
2.0
17
100
0
68
52
5
0
41
1.25
109111843--109111935
46
2.0
46
100
0
186
44
17
15
23
1.86
109115672--109115744
24
3.0
24
85
0
92
32
20
30
16
1.95
109118329--109118582
127
2.0
127
100
0
508
34
11
18
34
1.88
109124911--109124957
18
2.7
18
83
3
60
10
4
8
76
1.13
109129147--109129194
21
2.3
21
81
0
60
25
31
27
16
1.97
109130665--109130715
19
2.7
19
78
6
59
31
5
25
37
1.80
109130810--109130858
24
2.0
24
96
0
89
12
26
4
57
1.53
109136116--109136233
55
2.1
54
83
9
141
27
30
25
16
1.97
109138472--109138759
40
7.2
40
84
1
335
25
25
22
26
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438