Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  337  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105393845--105394008
71
2.3
71
100
0
328
18
28
17
35
1.94
105393845--105394042
71
2.8
70
92
3
276
20
28
17
33
1.95
105398177--105398363
71
2.7
68
93
5
281
18
28
18
34
1.95
105398200--105398363
71
2.3
71
100
0
328
18
28
17
35
1.94
105398200--105398397
71
2.8
70
92
3
276
20
28
17
33
1.95
105400696--105400990
47
6.3
47
92
0
464
27
28
8
35
1.86
105404502--105404889
40
9.7
40
91
0
535
24
28
21
25
1.99
105404943--105405017
38
2.0
38
84
10
100
22
26
18
32
1.97
105407274--105407568
47
6.3
47
92
0
464
27
28
8
35
1.86
105420163--105420224
30
2.1
30
100
0
124
27
12
20
38
1.90
105420565--105420620
26
2.1
27
93
3
96
35
19
1
42
1.62
105422143--105422211
34
2.0
34
97
0
129
30
31
7
30
1.84
105426119--105426216
28
3.5
28
84
4
108
29
16
24
29
1.96
105433796--105433893
28
3.5
28
84
4
108
29
16
24
29
1.96
105442379--105442501
39
3.2
39
88
2
176
25
32
20
21
1.98
105444229--105444354
46
2.7
46
80
8
148
30
17
28
23
1.97
105449114--105449168
3
18.3
3
100
0
110
34
0
0
65
0.93
105451521--105451612
25
3.7
25
91
0
139
23
23
23
28
2.00
105451521--105451625
25
4.2
24
87
3
122
26
21
23
27
1.99
105451521--105451637
50
2.3
50
85
5
157
25
23
23
27
2.00
105452916--105453089
92
1.9
91
88
2
260
51
10
17
20
1.75
105463727--105463859
51
2.7
50
83
4
171
25
20
27
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105463727--105463870
49
2.9
48
82
4
180
26
20
26
26
1.99
105466695--105467095
199
2.0
199
98
0
768
31
18
23
25
1.97
105469395--105469565
22
8.2
21
69
27
73
23
2
1
71
1.06
105469395--105469565
15
11.3
14
68
22
73
23
2
1
71
1.06
105469479--105469566
17
5.6
16
76
12
94
20
2
1
76
0.97
105469479--105469565
7
11.2
8
71
21
62
20
2
1
75
0.97
105469400--105469566
32
5.1
32
74
15
107
23
2
1
71
1.07
105469479--105469566
8
10.1
8
71
19
61
20
2
1
76
0.97
105469533--105469582
22
2.3
22
86
6
66
14
6
4
76
1.13
105469628--105469665
17
2.2
17
90
0
58
23
0
2
73
0.95
105469746--105469791
21
2.2
21
100
0
92
19
8
21
50
1.75
105479537--105479664
55
2.3
55
81
2
159
25
21
31
21
1.98
105482860--105482919
31
2.0
29
87
9
84
46
0
3
50
1.18
105485465--105485508
19
2.3
19
88
4
61
68
0
0
31
0.90
105485448--105485507
30
2.0
30
81
12
70
65
0
1
33
1.03
105494531--105494621
47
1.9
48
80
10
107
58
5
4
31
1.41
105495070--105495105
19
1.9
18
94
5
63
63
11
2
22
1.39
105495075--105495125
24
2.1
25
89
10
79
60
7
3
27
1.42
105496994--105497025
5
6.6
5
92
7
57
81
0
0
18
0.70
105496995--105497025
9
3.3
9
95
4
53
80
0
0
19
0.71
105499525--105499558
17
2.0
17
100
0
68
17
11
35
35
1.87
105501427--105501458
5
6.6
5
92
7
57
81
0
0
18
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105501428--105501458
9
3.3
9
95
4
53
80
0
0
19
0.71
105509737--105509797
31
2.0
31
100
0
122
32
8
29
29
1.86
105527851--105527944
45
2.1
45
95
0
170
34
24
8
32
1.86
105533158--105533228
28
2.5
28
97
0
133
28
14
26
30
1.95
105537923--105538106
40
4.6
39
75
6
138
26
23
27
22
2.00
105537963--105538151
80
2.4
81
77
4
186
23
24
29
22
1.99
105545833--105545901
29
2.3
30
78
14
79
68
2
8
20
1.30
105549214--105549250
19
1.9
19
94
0
65
62
0
5
32
1.18
105555553--105555674
44
2.8
42
82
10
131
27
15
22
34
1.94
105557052--105557166
27
4.2
27
80
11
128
35
21
22
20
1.96
105557060--105557165
54
2.0
54
94
3
187
35
20
22
20
1.96
105557556--105557585
8
3.8
8
90
0
51
3
26
26
43
1.70
105565004--105565145
27
5.2
27
80
12
166
35
22
23
18
1.95
105565004--105565145
54
2.6
54
93
3
232
35
22
23
18
1.95
105567679--105567820
66
2.2
66
92
0
230
18
28
26
26
1.98
105567679--105567844
66
2.5
66
84
6
201
17
28
24
29
1.97
105573270--105573300
9
3.4
9
95
0
53
51
19
0
29
1.47
105579083--105579121
4
9.8
4
100
0
78
48
0
0
51
1.00
105581431--105581572
35
4.0
35
95
2
239
38
11
14
35
1.81
105581914--105582020
7
15.7
7
69
18
50
38
4
0
57
1.20
105581922--105582056
21
6.7
21
67
17
65
36
5
0
57
1.23
105587817--105587866
14
3.8
13
84
10
66
84
0
14
2
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105587817--105587867
21
2.5
21
84
12
70
84
0
13
1
0.71
105587819--105587867
22
2.2
21
85
7
62
83
0
14
2
0.73
105588740--105588916
44
4.1
43
73
13
148
30
15
25
28
1.96
105588909--105589496
119
5.0
119
94
1
990
33
18
18
29
1.95
105588909--105589496
237
2.5
237
93
1
997
33
18
18
29
1.95
105589420--105589689
83
3.2
83
93
3
461
30
21
20
27
1.98
105590069--105590173
18
5.5
18
77
15
104
39
11
12
37
1.79
105590070--105590155
42
2.0
42
88
4
129
37
11
12
38
1.80
105590088--105590137
24
2.1
24
100
0
100
38
12
12
38
1.80
105590515--105590621
7
15.7
7
69
18
50
38
4
0
57
1.20
105590523--105590575
21
2.5
21
81
6
63
35
3
0
60
1.15
105590956--105590989
3
11.3
3
87
12
52
32
0
0
67
0.91
105590956--105590994
12
3.4
11
86
10
51
30
0
2
66
1.05
105605654--105605678
13
1.9
13
100
0
50
32
28
40
0
1.57
105621645--105621871
42
5.4
43
91
5
342
12
23
33
29
1.92
105622188--105622295
45
2.5
42
85
8
128
23
24
26
25
2.00
105627221--105627449
42
5.4
43
92
3
360
12
24
34
29
1.91
105627766--105627873
45
2.5
42
85
8
128
23
24
26
25
2.00
105652140--105652310
35
4.9
35
78
2
173
28
9
20
42
1.83
105652140--105652318
70
2.6
70
82
1
198
28
10
20
41
1.84
105677875--105678041
40
4.2
40
82
2
185
24
26
22
26
2.00
105685846--105685953
39
2.8
38
88
4
146
24
29
24
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105692314--105692497
40
4.6
39
75
6
138
26
23
27
22
2.00
105692354--105692542
80
2.4
81
77
4
186
23
24
29
22
1.99
105694341--105694400
30
2.0
30
86
0
84
33
25
5
36
1.78
105697192--105697233
13
3.2
13
100
0
84
54
14
0
30
1.40
105698184--105698227
11
4.2
11
80
8
56
0
22
18
59
1.38
105701942--105702010
28
2.5
28
90
2
113
43
26
10
20
1.83
105710913--105710977
26
2.5
26
87
2
94
40
20
21
18
1.92
105711530--105711554
12
2.1
12
100
0
50
36
16
0
48
1.46
105717351--105717501
43
3.5
43
87
2
205
25
19
27
27
1.99
105724513--105724677
43
3.8
43
90
1
251
24
21
29
25
1.99
105724610--105724759
40
3.7
40
73
9
115
26
19
27
26
1.99
105725242--105725274
16
1.9
18
88
11
52
18
12
18
51
1.76
105726827--105726897
24
3.0
24
93
0
115
38
16
5
39
1.73
105727021--105727076
20
2.8
21
76
15
57
33
21
30
14
1.93
105727045--105727108
30
2.1
31
88
5
94
40
20
21
17
1.91
105728561--105728610
25
2.0
25
100
0
100
64
4
8
24
1.38
105736979--105737023
22
2.0
22
91
0
72
11
6
4
77
1.09
105739791--105740103
123
2.5
125
86
4
436
37
21
15
25
1.92
105743880--105743947
30
2.3
30
82
5
75
27
20
4
47
1.69
105745281--105745489
46
4.6
45
76
9
192
27
20
21
31
1.98
105745319--105745482
44
3.7
44
79
9
147
28
23
20
28
1.99
105745277--105745576
134
2.2
135
87
0
431
26
22
20
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105748324--105748506
39
4.6
39
86
0
231
24
21
30
23
1.99
105755749--105755931
39
4.6
39
87
0
240
24
22
30
22
1.99
105760795--105760840
20
2.4
19
81
3
56
26
26
19
28
1.99
105771079--105771406
123
2.6
124
86
8
432
36
19
16
28
1.93
105775084--105775318
10
23.9
9
66
17
78
34
4
2
57
1.33
105775075--105775136
10
6.2
10
78
12
65
30
6
1
61
1.31
105775142--105775221
27
2.8
29
81
7
101
36
2
2
58
1.25
105775252--105775305
27
2.0
27
85
0
72
35
1
1
61
1.18
105777850--105777905
16
3.6
16
81
16
73
48
1
0
50
1.11
105777856--105777912
16
3.7
16
80
17
59
50
0
0
49
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438