genome.fa.s3.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  145  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43339850--43340023	46	3.8	46	78	14	214	20	21	29	28	1.98
43341505--43341709	49	4.2	49	96	0	365	30	30	8	30	1.87
43344904--43344949	7	6.4	7	89	2	65	15	0	45	39	1.46
43348955--43349030	28	2.7	28	83	0	98	34	15	27	22	1.95
43354427--43354572	55	2.7	53	83	7	195	32	15	26	26	1.95
43356662--43356782	50	2.4	52	85	2	174	38	14	14	33	1.87
43358172--43358254	43	1.9	43	82	4	105	49	19	12	19	1.79
43371044--43371299	40	6.4	40	92	2	376	26	27	22	24	2.00
43376463--43376582	6	19.3	6	69	19	68	50	14	15	20	1.78
43376472--43376574	31	3.3	31	90	0	143	50	13	16	19	1.78
43376719--43376820	27	3.8	26	83	5	96	37	20	22	19	1.95
43376979--43377042	22	2.9	22	77	9	67	35	23	20	20	1.96
43377470--43377718	27	9.3	27	88	0	311	25	21	20	33	1.97
43377702--43378128	27	15.9	27	80	6	149	31	8	21	38	1.83
43377728--43377885	81	2.0	81	79	5	176	31	10	22	36	1.87
43377810--43378122	54	5.8	53	87	5	416	30	8	20	39	1.82
43377757--43378122	81	4.6	80	83	3	387	30	8	21	39	1.83
43380638--43380697	30	2.0	30	83	6	77	26	26	8	38	1.85
43384240--43384411	93	1.8	93	96	0	317	27	30	22	20	1.98
43384232--43384407	46	3.8	46	81	10	232	28	29	21	20	1.98
43386792--43386880	30	3.0	30	80	8	101	57	15	16	10	1.65
43386792--43386871	15	5.4	15	80	7	92	58	13	17	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43386803--43386880	15	5.2	15	78	9	79	56	15	16	11	1.67
43389775--43389904	46	2.8	48	81	11	171	29	29	20	20	1.98
43390930--43391424	247	2.0	243	98	1	947	37	19	8	34	1.82
43391486--43391866	190	2.0	191	85	3	509	34	20	15	29	1.94
43392977--43393148	93	1.8	93	96	0	317	27	30	22	20	1.98
43392969--43393144	46	3.8	46	81	10	232	28	29	21	20	1.98
43395525--43395613	30	3.0	30	80	8	101	57	15	16	10	1.65
43395525--43395604	15	5.4	15	80	7	92	58	13	17	10	1.62
43395536--43395613	15	5.2	15	78	9	79	56	15	16	11	1.67
43398515--43398644	46	2.8	48	81	11	171	29	29	20	20	1.98
43401318--43401500	48	3.8	48	86	0	267	24	25	18	31	1.97
43414562--43414672	34	3.3	34	84	0	150	35	5	21	37	1.77
43414745--43414882	59	2.3	60	81	8	174	32	13	26	28	1.93
43418273--43418494	46	4.8	46	82	7	261	29	28	19	22	1.98
43424131--43424209	37	2.1	37	97	0	149	24	26	1	48	1.59
43426165--43426333	48	3.5	48	90	1	232	24	26	17	31	1.97
43426205--43426280	23	3.2	23	63	26	59	27	26	15	30	1.96
43426119--43426333	96	2.2	96	83	3	254	23	26	17	32	1.97
43426310--43426357	24	2.0	24	100	0	96	25	25	20	29	1.99
43427624--43427760	48	2.9	47	79	8	150	34	16	16	33	1.91
43430573--43430630	29	2.0	29	100	0	116	51	0	3	44	1.18
43436289--43436381	32	2.9	32	93	0	150	51	16	3	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43436356--43436408	27	2.0	27	85	7	72	52	16	3	26	1.61
43436299--43436420	59	2.0	62	81	10	144	53	16	3	27	1.58
43436299--43436420	32	4.0	31	80	12	128	53	16	3	27	1.58
43444887--43445062	46	3.8	46	78	7	212	30	26	19	23	1.98
43444895--43445065	93	1.8	93	94	0	306	29	26	20	23	1.99
43447009--43447081	31	2.4	30	77	8	76	52	6	6	34	1.55
43449365--43449401	9	4.1	9	89	0	56	35	10	2	51	1.51
43450997--43451153	43	3.7	43	75	5	140	29	14	21	35	1.92
43453072--43453098	12	2.2	12	100	0	54	7	22	44	25	1.79
43455196--43455242	24	2.0	24	86	0	67	34	19	25	21	1.96
43455748--43455828	40	2.0	40	97	0	153	29	25	6	38	1.80
43457733--43457759	7	3.9	7	100	0	54	59	0	14	25	1.36
43465272--43465319	25	1.9	25	86	0	69	33	25	16	25	1.96
43465363--43465421	20	3.0	20	97	0	109	37	10	20	32	1.86
43465367--43465421	11	5.4	11	70	16	55	38	10	20	30	1.87
43465472--43465566	24	4.0	24	85	10	124	28	21	24	26	1.99
43465473--43465566	47	2.0	49	85	12	133	27	21	24	26	1.99
43465758--43465917	38	4.4	38	87	9	214	38	16	23	21	1.93
43465758--43465894	69	2.0	66	94	4	238	39	16	21	22	1.92
43473708--43473766	20	3.0	20	97	0	109	37	10	20	32	1.86
43473712--43473766	11	5.4	11	70	16	55	38	10	20	30	1.87
43473817--43473910	23	4.0	24	84	8	122	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43473818--43473910	47	2.0	48	85	10	129	27	20	24	26	1.99
43474102--43474265	38	4.5	38	84	11	225	37	16	23	22	1.94
43474126--43474241	31	3.5	31	80	15	142	41	14	20	23	1.89
43474102--43474241	69	2.0	69	97	0	262	38	15	22	23	1.92
43477293--43477322	5	6.2	5	96	3	53	0	36	0	63	0.95
43485136--43485221	24	3.6	24	93	3	156	22	17	25	34	1.95
43485136--43485243	47	2.3	48	92	7	177	25	17	24	33	1.96
43485136--43485243	24	4.6	23	73	13	85	25	17	24	33	1.96
43491740--43491800	27	2.3	27	80	5	70	9	18	36	36	1.84
43493931--43494081	40	3.8	40	77	11	141	26	24	27	21	2.00
43493968--43494097	40	3.2	40	79	2	154	23	23	28	23	2.00
43493930--43494097	80	2.1	80	82	6	207	26	23	27	22	2.00
43501724--43501874	40	3.8	40	78	6	155	27	23	27	21	1.99
43501761--43501890	40	3.2	40	79	2	154	23	23	28	23	2.00
43501724--43501890	80	2.1	79	82	7	205	26	23	27	22	2.00
43506011--43506062	27	1.9	27	88	0	77	26	25	9	38	1.86
43511637--43511998	49	7.4	49	95	0	607	28	8	33	29	1.87
43512100--43512221	37	3.3	37	97	0	226	25	19	33	21	1.97
43521210--43521386	40	4.4	40	91	0	282	27	29	20	22	1.98
43523263--43523324	28	2.2	28	91	2	99	27	27	11	33	1.91
43528282--43528434	29	5.5	28	75	7	132	30	33	17	17	1.94
43528252--43528436	57	3.2	57	88	4	268	30	35	16	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43528307--43528408	29	3.6	29	81	10	138	32	38	13	15	1.87
43530394--43530453	28	2.2	26	77	11	66	25	25	11	38	1.89
43530408--43530470	28	2.2	28	91	0	99	26	26	11	34	1.90
43530582--43530647	33	2.0	33	100	0	132	36	21	9	33	1.85
43540086--43540260	39	4.4	40	89	2	273	28	28	20	22	1.98
43555831--43556191	47	7.8	45	77	10	329	21	29	20	27	1.98
43555836--43556191	94	3.8	94	84	6	367	22	29	20	27	1.98
43556531--43556588	30	1.9	30	89	0	89	29	25	12	32	1.92
43577971--43578033	30	2.1	30	91	2	101	60	11	6	22	1.53
43586366--43586533	40	4.2	40	80	3	196	25	22	27	25	2.00
43594383--43594590	40	5.2	40	85	2	258	25	21	26	26	1.99
43596436--43596530	27	3.5	27	79	2	75	27	30	9	32	1.88
43596468--43596545	27	2.9	27	84	3	86	29	30	7	32	1.85
43600091--43600319	48	4.9	48	76	7	236	27	24	21	26	1.99
43615050--43615168	46	2.6	46	94	0	211	20	18	29	31	1.96
43619654--43620172	47	11.1	47	92	1	837	33	14	27	24	1.94
43619654--43620172	140	3.7	141	94	1	882	33	14	27	24	1.94
43619655--43620013	23	15.3	24	61	25	83	33	14	27	24	1.94
43619654--43620172	187	2.8	187	92	0	860	33	14	27	24	1.94
43620145--43620237	46	2.0	46	89	0	141	33	8	29	29	1.87
43621729--43622167	40	11.0	40	91	0	662	23	20	28	27	1.99
43622331--43622383	25	2.1	25	82	6	63	35	13	30	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43625886--43626406	47	11.1	47	93	0	846	33	14	28	24	1.94
43626216--43626341	25	5.3	25	64	24	74	33	12	26	26	1.93
43626380--43626470	46	2.0	46	88	0	137	34	8	30	26	1.87
43628613--43628692	15	5.4	15	77	7	83	10	18	13	57	1.64
43628604--43628691	30	3.0	30	80	11	92	10	18	15	55	1.68
43632847--43632924	15	5.2	15	76	11	79	12	14	14	58	1.63
43635302--43635477	46	3.8	46	79	10	205	21	20	29	28	1.98
43635298--43635470	93	1.9	93	95	0	310	21	20	30	27	1.98
43639772--43639805	18	1.9	18	88	5	52	52	5	14	26	1.64
43640536--43640597	27	2.3	26	78	8	70	51	12	0	35	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438