genome.fa.s3.2.7.7.80.10.50.1000.299.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  299  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93606604--93606782	46	3.9	46	79	10	138	27	30	9	32	1.88
93606667--93606927	47	5.6	47	95	1	445	26	31	11	30	1.92
93606667--93606927	139	1.9	140	93	1	452	26	31	11	30	1.92
93610371--93610908	40	13.6	40	97	0	958	24	26	22	26	2.00
93610371--93610905	119	4.5	119	96	1	957	24	25	22	26	2.00
93613191--93613324	46	2.9	46	81	5	137	27	29	8	33	1.87
93613254--93613516	47	5.6	47	96	0	454	26	31	12	30	1.92
93613285--93613571	141	2.1	138	83	7	348	29	28	10	30	1.91
93617938--93618003	29	2.3	29	83	0	78	33	30	13	22	1.93
93621102--93621143	22	1.9	22	85	9	59	9	9	4	76	1.15
93624825--93624858	16	2.2	15	94	5	59	17	8	0	73	1.08
93633101--93633184	33	2.5	34	79	9	84	17	7	5	69	1.33
93635729--93635767	14	2.7	14	88	4	51	64	2	10	23	1.37
93648416--93648582	46	3.6	46	75	10	160	20	20	28	30	1.98
93648407--93648577	93	1.8	93	88	0	261	20	21	28	29	1.98
93656740--93656827	6	14.3	6	73	17	74	47	14	18	19	1.82
93656749--93656827	31	2.5	31	89	0	113	48	13	18	18	1.81
93657247--93657584	27	12.6	27	84	3	421	25	19	20	34	1.96
93657486--93657597	27	4.2	26	71	15	75	28	12	23	35	1.91
93657589--93658150	27	20.9	27	83	4	490	38	8	22	31	1.84
93658162--93658311	27	5.6	27	81	6	169	30	8	20	40	1.82
93658158--93658311	81	1.9	82	82	4	195	30	8	21	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93660292--93660379	6	14.3	6	71	17	65	48	14	17	19	1.81
93660303--93660379	31	2.5	31	89	0	109	49	14	16	19	1.80
93660799--93661189	27	14.6	27	84	3	493	25	19	20	35	1.96
93660781--93661180	107	3.7	108	85	3	497	25	19	20	34	1.96
93661091--93661202	27	4.2	26	73	15	84	27	12	24	35	1.91
93660809--93661189	134	2.8	133	88	2	532	25	19	19	35	1.95
93661194--93661729	27	20.0	27	81	5	415	37	8	21	31	1.84
93661739--93661888	27	5.6	27	82	6	178	29	8	21	40	1.83
93663249--93663307	30	2.0	30	100	0	118	15	10	30	44	1.79
93682644--93682672	11	2.6	11	100	0	58	17	6	0	75	1.01
93688293--93688403	55	2.0	55	98	0	213	45	5	17	31	1.70
93690729--93690956	96	2.4	97	83	5	266	28	18	27	25	1.98
93690784--93691007	50	4.6	50	80	6	244	29	20	26	23	1.99
93697107--93697384	48	5.7	49	78	7	255	30	20	26	23	1.98
93699526--93699637	39	2.9	39	88	5	172	13	24	24	38	1.91
93702226--93702297	27	2.7	27	72	10	76	43	19	18	19	1.89
93702462--93702633	27	6.4	27	84	1	202	27	17	18	36	1.94
93702630--93702884	27	9.5	26	76	10	158	29	13	20	35	1.92
93702615--93702883	54	5.0	54	77	8	214	29	13	21	35	1.92
93702630--93702878	81	3.1	81	78	10	226	30	13	20	36	1.91
93706512--93706612	28	3.6	28	79	10	118	24	14	33	26	1.94
93706523--93706612	27	3.2	27	78	10	92	26	14	33	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93712450--93712623	78	2.2	79	81	9	198	28	25	20	25	1.99
93712450--93712626	38	4.6	38	84	6	169	27	26	20	24	1.99
93719659--93719844	40	4.7	40	84	5	198	27	25	21	25	1.99
93721677--93721712	12	2.8	13	87	8	56	16	38	36	8	1.79
93723496--93723711	39	5.5	39	87	1	281	29	26	22	21	1.99
93731761--93731814	28	1.9	28	84	0	72	33	24	25	16	1.96
93732179--93732356	27	6.6	27	82	0	212	26	18	17	36	1.94
93732227--93732375	54	2.8	54	82	4	149	28	18	15	37	1.91
93732384--93732837	27	17.0	26	79	5	262	32	11	19	36	1.88
93732371--93732836	54	8.7	54	78	6	385	32	11	19	35	1.88
93732371--93732832	107	4.3	107	79	4	450	32	11	19	36	1.88
93733056--93733093	19	2.0	20	90	10	62	26	50	13	10	1.73
93737665--93737851	88	2.1	88	95	0	338	27	24	16	31	1.96
93738268--93738301	16	2.1	17	88	5	52	35	14	8	41	1.77
93750987--93751162	49	3.5	48	85	5	210	25	18	26	29	1.98
93750986--93751175	101	1.9	100	90	1	263	25	17	26	29	1.98
93760760--93761079	46	7.0	46	93	0	498	37	14	25	23	1.92
93762389--93762534	29	5.1	29	80	3	136	26	32	13	27	1.94
93762420--93762529	58	1.9	58	86	0	157	26	30	14	29	1.95
93762420--93762541	29	4.2	29	84	1	138	27	29	13	30	1.94
93762753--93762799	16	2.9	16	87	6	60	8	17	21	53	1.70
93765700--93765733	18	1.9	18	88	5	52	35	14	11	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93766792--93766879	29	3.0	29	88	0	113	29	30	12	27	1.93
93766797--93766915	29	4.1	29	85	1	105	28	29	12	29	1.93
93766793--93766903	58	1.9	58	81	0	132	27	29	13	28	1.94
93771045--93771195	73	2.1	73	89	0	230	30	15	8	45	1.77
93771786--93771820	18	1.9	18	88	0	52	54	8	31	5	1.54
93772630--93772703	36	2.1	36	92	0	121	31	12	13	43	1.81
93786585--93786745	40	4.1	39	80	7	146	24	26	22	26	2.00
93787398--93787462	32	2.0	32	100	0	130	49	27	3	20	1.64
93789244--93789333	45	2.0	45	100	0	180	53	15	17	13	1.73
93801468--93801677	47	4.3	47	79	10	165	31	28	14	26	1.95
93801465--93801641	93	1.8	97	81	9	220	33	26	13	25	1.93
93801587--93801693	54	2.0	51	89	5	160	30	28	14	25	1.95
93804105--93804701	72	8.4	71	78	2	532	35	21	15	27	1.94
93805080--93805138	27	2.2	27	81	0	64	27	20	22	30	1.98
93808381--93808511	40	3.3	39	73	8	120	24	24	28	22	2.00
93814018--93814060	19	2.3	19	80	15	54	48	4	0	46	1.22
93818114--93818224	28	4.0	28	81	2	127	19	25	19	35	1.96
93820648--93820833	40	4.7	40	88	5	236	25	22	26	25	2.00
93820648--93820866	80	2.8	80	80	11	245	26	21	26	25	2.00
93828796--93828981	40	4.7	40	88	5	236	25	22	26	25	2.00
93828796--93829013	80	2.7	79	81	9	248	26	21	26	25	1.99
93837369--93837427	26	2.3	25	80	13	66	37	23	10	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93837534--93837646	28	4.2	28	78	8	128	16	23	22	38	1.93
93850708--93850879	93	1.8	93	96	0	317	27	30	22	20	1.98
93850700--93850875	46	3.8	46	81	10	232	28	29	21	20	1.98
93853260--93853348	30	3.0	30	80	8	101	57	15	16	10	1.65
93853260--93853339	15	5.4	15	80	7	92	58	13	17	10	1.62
93853271--93853348	15	5.2	15	78	9	79	56	15	16	11	1.67
93858833--93858869	19	1.9	19	88	0	56	81	2	16	0	0.81
93860099--93860205	40	2.7	40	82	0	124	28	22	25	23	1.99
93860140--93860266	40	3.2	39	83	8	141	22	24	29	23	1.99
93864649--93864820	75	2.4	75	83	8	205	32	11	23	33	1.90
93864652--93864818	35	4.6	35	84	9	167	32	11	23	32	1.90
93864748--93864818	36	2.0	35	88	2	106	33	14	21	30	1.92
93872148--93872318	75	2.4	75	84	7	212	32	11	23	33	1.90
93872151--93872316	35	4.6	35	84	8	174	31	11	23	33	1.90
93878619--93879146	264	2.0	264	94	0	930	41	15	12	30	1.85
93880572--93880627	25	2.2	26	76	17	64	62	0	3	33	1.12
93881346--93881379	16	2.2	15	89	5	50	55	2	0	41	1.15
93881447--93881502	29	1.9	29	82	7	69	53	12	7	26	1.64
93883801--93883925	29	4.3	29	80	1	126	31	28	14	25	1.95
93887357--93888058	48	14.0	48	83	9	843	32	26	6	34	1.81
93887826--93887871	13	3.4	13	82	11	65	41	26	0	32	1.56
93887814--93887871	28	2.1	28	100	0	116	43	25	0	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93887766--93887918	76	2.0	75	98	1	297	37	26	3	32	1.75
93887814--93887864	15	3.5	15	84	10	79	45	25	0	29	1.54
93887671--93888014	171	2.0	171	95	1	618	35	27	5	32	1.79
93887401--93888058	219	2.9	219	90	5	958	33	26	5	34	1.81
93887718--93887966	123	2.0	124	96	0	464	35	27	4	32	1.78
93889740--93889765	2	13.0	2	100	0	52	50	0	0	50	1.00
93896514--93896616	29	3.6	27	81	5	98	29	33	16	21	1.95
93904120--93904253	46	2.9	46	81	5	137	27	29	8	33	1.87
93904183--93904443	47	5.6	47	94	1	436	26	31	12	30	1.92
93904174--93904443	92	2.9	92	92	3	436	25	31	12	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438