genome.fa.s3.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  180  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55479319--55479438	24	5.0	24	89	9	174	27	21	20	30	1.98
55479492--55479554	20	3.2	20	93	0	108	30	19	12	38	1.89
55479605--55479665	25	2.4	25	94	0	104	26	19	22	31	1.98
55484088--55484129	23	1.9	23	85	9	61	30	9	23	35	1.87
55491847--55491878	15	2.1	15	100	0	64	34	28	6	31	1.82
55496482--55496612	40	3.3	40	78	2	147	25	23	27	23	2.00
55499658--55499701	17	2.6	17	89	7	63	75	4	4	15	1.14
55500846--55500896	26	2.0	26	88	0	75	37	5	11	45	1.65
55502576--55502761	40	4.7	40	84	7	211	25	22	26	25	2.00
55510286--55510471	40	4.7	40	86	5	227	25	22	26	25	2.00
55510286--55510504	80	2.8	80	79	12	238	26	22	26	24	2.00
55513564--55513598	2	17.5	2	93	0	61	45	0	0	54	0.99
55519812--55519949	72	1.9	72	92	0	231	34	9	7	49	1.63
55527718--55527751	2	17.0	2	100	0	68	50	0	0	50	1.00
55528458--55528763	40	7.7	40	90	4	356	26	22	26	24	2.00
55528458--55528763	120	2.5	121	84	7	392	26	22	26	24	2.00
55534905--55535076	93	1.8	93	96	0	317	27	29	21	20	1.98
55534897--55535072	46	3.8	46	80	12	225	28	28	21	21	1.98
55537450--55537538	30	3.0	30	80	8	101	57	15	16	10	1.65
55537450--55537529	15	5.4	15	80	7	92	58	13	17	10	1.62
55537461--55537538	15	5.2	15	78	9	79	56	15	16	11	1.67
55540445--55540618	46	3.8	46	79	13	214	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55540453--55540622	92	1.8	93	94	1	306	28	29	21	20	1.98
55544595--55544860	94	2.9	90	75	10	232	24	26	19	29	1.99
55546960--55547006	24	2.0	23	84	12	60	59	0	25	14	1.36
55553024--55553053	15	2.0	15	100	0	60	40	6	26	26	1.81
55559516--55559667	53	2.8	54	83	4	200	19	25	19	36	1.95
55568000--55568149	41	3.6	41	76	10	153	22	21	28	28	1.99
55567980--55568135	41	3.8	40	74	18	140	22	22	26	28	1.99
55576339--55576488	41	3.6	41	77	10	162	22	22	28	27	1.99
55576319--55576488	41	4.2	40	74	18	161	22	22	27	27	1.99
55583906--55584117	46	4.6	46	84	4	214	34	16	22	26	1.95
55584837--55584951	46	2.5	46	78	4	126	31	17	17	33	1.93
55586360--55586394	12	2.9	12	86	0	52	25	2	5	65	1.28
55587714--55587774	30	2.1	29	93	3	104	26	14	22	36	1.93
55595804--55595853	19	2.6	19	90	0	82	20	32	32	16	1.94
55600733--55600862	50	2.6	49	89	3	181	29	30	17	23	1.97
55600733--55600919	101	1.9	99	84	4	250	27	29	18	24	1.98
55603640--55603851	46	4.6	46	81	5	207	23	30	19	26	1.98
55610326--55610374	22	2.2	20	77	19	53	51	26	4	18	1.64
55611138--55611287	43	3.5	43	80	5	160	33	23	15	28	1.95
55616211--55616301	45	2.0	45	93	0	155	37	25	13	24	1.91
55626045--55626193	51	3.1	51	69	14	136	30	25	16	27	1.96
55635430--55635478	22	2.2	20	77	19	53	51	24	6	18	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55636227--55636396	43	4.0	43	75	9	143	34	24	14	25	1.94
55636977--55637084	30	3.5	30	71	21	105	45	24	3	26	1.70
55636968--55637099	65	2.0	65	92	0	219	43	24	5	26	1.75
55638522--55638562	21	1.9	22	90	5	66	41	2	21	34	1.67
55645703--55645835	46	2.9	46	82	3	160	19	19	25	35	1.95
55652649--55652781	46	2.9	47	86	3	171	20	20	24	34	1.96
55654591--55654688	28	3.5	29	82	9	114	27	15	26	30	1.96
55662305--55662431	28	4.5	29	90	6	165	27	15	25	31	1.96
55666285--55666448	71	2.3	71	97	0	310	18	28	18	34	1.95
55666285--55666482	71	2.8	70	90	3	249	20	28	17	32	1.96
55669794--55669849	27	2.1	27	100	0	112	39	7	19	33	1.79
55669959--55669992	17	2.0	17	94	0	59	32	29	11	26	1.92
55677165--55677309	43	3.4	43	78	10	145	30	26	19	23	1.98
55677714--55677794	40	2.0	40	100	0	162	46	28	0	24	1.53
55679878--55679962	27	3.1	27	79	0	98	23	27	14	35	1.93
55680048--55680146	26	3.7	27	84	9	132	21	23	17	38	1.93
55687647--55687819	46	3.7	47	75	10	167	31	27	19	21	1.97
55687697--55687838	46	3.1	45	70	18	114	29	28	19	22	1.98
55689235--55689365	49	2.7	49	83	2	174	22	26	22	29	1.99
55689423--55689640	46	4.8	46	86	4	289	24	25	18	31	1.98
55689423--55689638	91	2.4	91	85	6	285	25	25	18	31	1.98
55692068--55692223	54	2.9	54	88	4	219	20	23	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55692068--55692205	27	5.1	27	84	10	167	19	23	22	34	1.96
55692068--55692223	27	5.8	27	83	13	162	20	23	21	34	1.97
55692068--55692223	81	1.9	80	81	11	185	20	23	21	34	1.97
55695477--55695511	18	1.9	18	88	0	52	22	17	17	42	1.88
55700252--55700379	49	2.6	49	81	0	157	24	26	19	29	1.98
55700212--55700405	98	2.0	97	81	7	223	25	26	20	27	1.99
55700491--55700613	46	2.7	46	92	0	201	23	24	21	30	1.99
55709429--55709487	25	2.4	25	94	0	109	52	10	20	16	1.72
55711199--55711456	40	6.5	41	85	7	270	26	26	20	27	1.99
55711232--55711456	80	2.8	80	87	7	316	26	26	20	26	1.99
55711232--55711456	40	5.7	40	89	5	282	26	26	20	26	1.99
55718786--55719000	46	4.6	46	76	5	173	32	19	25	22	1.98
55718830--55719000	94	1.8	94	89	0	270	31	18	26	23	1.97
55720287--55720326	21	2.0	20	85	5	53	15	35	25	25	1.94
55728729--55728913	40	4.7	40	88	6	220	25	26	22	25	2.00
55729618--55729643	2	13.0	2	100	0	52	50	0	0	50	1.00
55730995--55731085	42	2.1	43	79	2	103	24	16	29	29	1.96
55731057--55731188	50	2.8	46	78	11	137	25	19	26	28	1.99
55734634--55734802	52	3.3	51	85	6	202	27	26	14	31	1.94
55736149--55736316	40	4.2	40	85	5	198	26	27	22	23	1.99
55736149--55736316	80	2.1	80	86	4	232	26	27	22	23	1.99
55740192--55740361	46	3.7	46	79	14	197	28	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55740197--55740365	93	1.8	91	92	2	284	28	29	20	21	1.98
55740194--55740381	45	4.1	45	73	18	149	28	29	20	21	1.98
55740785--55740840	29	1.9	29	88	0	85	32	23	7	37	1.82
55744203--55744422	45	4.9	45	89	3	311	21	20	28	28	1.98
55746717--55746817	29	3.6	29	76	10	93	20	16	32	29	1.95
55754288--55754335	13	3.6	13	83	11	53	33	8	0	58	1.28
55758746--55758819	29	2.6	29	95	0	139	27	31	14	27	1.95
55758687--55758819	58	2.3	58	80	2	133	24	33	17	24	1.96
55761134--55761265	29	4.6	29	91	0	201	25	32	15	26	1.95
55772445--55772611	40	4.2	40	81	2	176	24	27	22	25	2.00
55772461--55772611	80	1.9	79	83	6	198	23	27	22	25	2.00
55773436--55773481	17	2.5	19	74	22	53	34	23	17	23	1.96
55774642--55774742	28	3.5	28	86	6	114	29	13	26	29	1.94
55782554--55782654	28	3.5	28	86	6	114	29	13	26	29	1.94
55785265--55785390	39	3.2	39	91	0	198	22	20	29	27	1.98
55785265--55785408	78	1.8	78	83	2	191	22	22	29	26	1.99
55785265--55785417	39	3.9	39	87	1	155	21	22	30	26	1.99
55788053--55788248	49	3.9	49	85	3	257	25	17	27	30	1.98
55788160--55788241	26	3.2	26	63	30	68	24	13	29	32	1.93
55788052--55788248	50	3.9	50	85	2	261	25	17	26	29	1.98
55788055--55788254	101	2.0	100	88	1	292	24	18	26	31	1.97
55788070--55788281	101	2.1	100	82	2	246	25	17	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55790897--55790931	2	17.5	2	100	0	70	51	48	0	0	1.00
55793547--55793738	50	3.8	50	78	5	210	27	19	24	29	1.98
55798024--55798436	47	8.7	47	91	2	601	28	29	7	34	1.85
55798024--55798436	96	4.3	96	90	1	627	28	29	7	34	1.85
55798024--55798436	143	2.9	141	90	2	610	28	29	7	34	1.85
55806851--55807207	43	8.4	42	75	10	298	26	19	23	29	1.98
55806885--55807207	42	7.6	43	75	11	317	26	20	22	30	1.98
55806846--55807259	85	4.9	85	87	1	553	27	20	23	29	1.99
55823207--55823261	15	3.7	14	83	7	56	14	10	18	56	1.67
55825953--55826139	50	3.7	52	81	3	193	25	16	25	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438